Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015259

Physical Location & Seq

Genomic Coordinates Forward (+)

19729097 .. 19730272

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTAAGATTAGAGGATTCAAGCTCGGAAAGCGCCTTTGCCGGGTCACCCGGTGGTTCTTATTCCGTAATACCCGAACCCGAACTGGATACTCCATGCTCAACCCGGCTTCTCCCCCTCCTTGCAGCAACAAACCCATGTGCAAGCTGCTCACTTGGGGCCGGAAGTTGTCCGCCGGAGCCAAATCTCTGTGCTGCCGCAAATCTGGGTCGGGCTACAAACAGTTGGGTCAGAACCCGGTTGAGACAAGCAAGCCTGTGACGGTTCCAAAGGGACACCTGGCTCTGTACGTGGGCCAAAACGACGGCGACTTTCACCGAGTTTTGGTGCCCGTCATTTACTTTAACCATCCCCTCTTCAGCCGGCTTCTGAGAGAGGCCGAAAAAGAGTACGGGTTTCAGCACGAGGGAGGGATCACCATACCCTGCCCGATCTCGGACTTCGAGAGCGTCAAGACCCGGATCGCCGCCGGGTCGACTCAGCGCAGGCTGACGTGGAAGCGCAGCGCCTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1900055 GO:1900057 GO:1900140 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

10.42

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45210 AT3G60690
fragaria_vesca	FvH4_7g11280 FvH4_7g11280
malus_domestica	MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica	Prupe.2G140600_v2.0.a1
pyrus_communis	pycom07g10730
rosa_chinensis	RchiOBHm_Chr1g0349431
rosa_laevigata	RLG00000028549
rosa_multiflora	Rmu_sc0002495.1_g000006
rosa_rugosa	Rorug01G0203800
rosa_samantha	Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana	Rw1G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	476
AciI	CCGC	3 cut(s)	174, 199, 468
AclWI	GGATC	2 cut(s)	422, 470
AcuI	CTGAAG	1 cut(s)	343
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	290, 392
AfiI	CCNNNNNNNGG	3 cut(s)	43, 325, 436
AgsI	TTSAA	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	25, 148
AluI	AGCT	2 cut(s)	25, 148
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	422, 470
AoxI	GGCC	3 cut(s)	160, 295, 378
ApeKI	GCWGC	4 cut(s)	126, 148, 195, 504
AspLEI	GCGC	4 cut(s)	36, 486, 504, 509
AspS9I	GGNCC	2 cut(s)	160, 295
AsuC2I	CCSGG	6 cut(s)	44, 52, 107, 239, 460, 472
AsuHPI	GGTGA	3 cut(s)	40, 308, 409
BaeGI	GKGCMC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	404
BbvI	GCAGC	3 cut(s)	135, 138, 182
BccI	CCATC	1 cut(s)	357
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	6 cut(s)	44, 52, 107, 239, 460, 472
BcoDI	GTCTC	1 cut(s)	239
BfoI	RGCGCY	2 cut(s)	37, 510
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	6 cut(s)	127, 149, 196, 199, 468, 505
BlsI	GCNGC	6 cut(s)	128, 150, 197, 200, 469, 506
Bme1390I	CCNGG	7 cut(s)	44, 52, 107, 239, 281, 460, 472
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	160, 295
BmiI	GGNNCC	4 cut(s)	161, 181, 267, 330
BmrFI	CCNGG	7 cut(s)	44, 52, 107, 239, 281, 460, 472
BpuMI	CCSGG	6 cut(s)	44, 52, 107, 239, 460, 472
BsaAI	YACGTR	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 325, 436
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	43, 325, 436
BseMII	CTCAG	2 cut(s)	362, 494
BseNI	ACTGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	135, 138, 182
BshFI	GGCC	3 cut(s)	162, 297, 380
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	9 cut(s)	43, 52, 107, 163, 177, 239, 364, 460, 471
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	43, 325, 436
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	162, 297, 380
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	414, 432, 462
BspACI	CCGC	3 cut(s)	174, 199, 468
BspANI	GGCC	3 cut(s)	162, 297, 380
BspCNI	CTCAG	2 cut(s)	363, 493
BspLI	GGNNCC	4 cut(s)	161, 181, 267, 330
BspPI	GGATC	2 cut(s)	422, 470
BspT107I	GGYRCC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	363
BssMI	GATC	3 cut(s)	414, 432, 462
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	225, 265
Bst6I	CTCTTC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	146, 254, 365, 488
BstDEI	CTNAG	3 cut(s)	6, 371, 480
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	349
BstH2I	RGCGCY	2 cut(s)	37, 510
BstHHI	GCGC	4 cut(s)	36, 486, 504, 509
BstKTI	GATC	3 cut(s)	417, 435, 465
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	414, 432, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	7 cut(s)	42, 50, 105, 237, 279, 458, 470
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	135, 138, 182
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	162, 297, 380
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	146, 254, 365, 488
CfoI	GCGC	4 cut(s)	36, 486, 504, 509
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	160, 295
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	289, 391
CviAII	CATG	2 cut(s)	97, 139
CviQI	GTAC	2 cut(s)	289, 391
DdeI	CTNAG	3 cut(s)	6, 371, 480
DpnI	GATC	3 cut(s)	416, 434, 464
DpnII	GATC	3 cut(s)	414, 432, 462
DraIII	CACNNNGTG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	343
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	100, 142
FaiI	YATR	3 cut(s)	98, 140, 422
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	96, 138
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	6 cut(s)	127, 149, 196, 199, 468, 505
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	6 cut(s)	127, 149, 196, 199, 468, 505
GlaI	GCGC	4 cut(s)	35, 485, 503, 508
GluI	GCNGC	6 cut(s)	127, 149, 196, 199, 468, 505
HaeII	RGCGCY	2 cut(s)	37, 510
HaeIII	GGCC	3 cut(s)	162, 297, 380
HapII	CCGG	9 cut(s)	43, 52, 107, 163, 177, 239, 364, 460, 471
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	4 cut(s)	36, 486, 504, 509
Hin1II	CATG	2 cut(s)	100, 142
Hin6I	GCGC	4 cut(s)	34, 484, 502, 507
HinP1I	GCGC	4 cut(s)	34, 484, 502, 507
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	2 cut(s)	18, 478
HpaII	CCGG	9 cut(s)	43, 52, 107, 163, 177, 239, 364, 460, 471
HphI	GGTGA	3 cut(s)	40, 308, 409
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	4 cut(s)	29, 234, 372, 439
Hpy188III	TCNNGA	2 cut(s)	445, 454
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	225, 265
HpyCH4IV	ACGT	2 cut(s)	291, 494
HpyCH4V	TGCA	2 cut(s)	126, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	3 cut(s)	6, 371, 480
HpySE526I	ACGT	2 cut(s)	291, 494
Hsp92II	CATG	2 cut(s)	100, 142
HspAI	GCGC	4 cut(s)	34, 484, 502, 507
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	414, 432, 462
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	3 cut(s)	135, 138, 182
MaeII	ACGT	2 cut(s)	291, 494
MaeIII	GTNAC	2 cut(s)	46, 259
MalI	GATC	3 cut(s)	416, 434, 464
MboI	GATC	3 cut(s)	414, 432, 462
MboII	GAAGA	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	8, 129, 365, 370, 400, 404
MroNI	GCCGGC	1 cut(s)	363
MseI	TTAA	2 cut(s)	345, 517
MspI	CCGG	9 cut(s)	43, 52, 107, 163, 177, 239, 364, 460, 471
MspR9I	CCNGG	7 cut(s)	44, 52, 107, 239, 281, 460, 472
MteI	GCGCNGCGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	31
NaeI	GCCGGC	1 cut(s)	365
NciI	CCSGG	6 cut(s)	44, 52, 107, 239, 460, 472
NdeII	GATC	3 cut(s)	414, 432, 462
NgoMIV	GCCGGC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	100, 142
NlaIV	GGNNCC	4 cut(s)	161, 181, 267, 330
NmuCI	GTSAC	2 cut(s)	46, 259
PdiI	GCCGGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	6 cut(s)	128, 150, 197, 200, 469, 506
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	161, 181, 267, 330
PspPI	GGNCC	2 cut(s)	160, 295
RsaI	GTAC	2 cut(s)	290, 392
RsaNI	GTAC	2 cut(s)	289, 391
SalI	GTCGAC	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	345, 517
SatI	GCNGC	6 cut(s)	127, 149, 196, 199, 468, 505
Sau3AI	GATC	3 cut(s)	414, 432, 462
Sau96I	GGNCC	2 cut(s)	160, 295
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	7 cut(s)	44, 52, 107, 239, 281, 460, 472
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	5 cut(s)	27, 150, 282, 294, 497
SsiI	CCGC	3 cut(s)	174, 199, 468
StyD4I	CCNGG	7 cut(s)	42, 50, 105, 237, 279, 458, 470
TaaI	ACNGT	2 cut(s)	225, 265
TaiI	ACGT	2 cut(s)	294, 497
TaqI	TCGA	2 cut(s)	444, 476
TauI	GCSGC	2 cut(s)	201, 470
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	345, 517
Tru9I	TTAA	2 cut(s)	345, 517
TseFI	GTSAC	2 cut(s)	46, 259
TseI	GCWGC	4 cut(s)	126, 148, 195, 504
Tsp45I	GTSAC	2 cut(s)	46, 259
TspGWI	ACGGA	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.