Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015259

Physical Location & Seq

Genomic Coordinates Reverse (-)

24202656 .. 24203168

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGAAAGATCAGAGGAATCAAGCTCGGAAAACGACTCTGCCGGGTCACCCGATGGTTCTTCTTCCGAAAACCCACGACCCGACCCGGATACCACCGGCTGAGCCCGCCCTCATCTCCGCCGTGCAGGTACAAGCCGATTGCGAAGCTACTCACTTGGGGTCGCCAGCTGAGTACCGGAGCTAAATCTCTATGTTGCATCAAACCCGGGTCGGGTTATATGCAGCTGGGTCAGAACCCGGTTGAGGAAACCAAGCCGGTGACCGTCCCCAAGGGACACCTGGCGGTCTACGTGGGTCAAAAAGACGGCGACTTTCACCGTGTTTTGGTGCCTGTGATTTACTTTAACCACCCACTCTTCGGTCAGCTTCTGAAAGAGGCCGAGCAAGAATACGGGTTCACCCACCCGGGTGGAATCACCATACCCTGTCCGATTTCGGACTTTGAGAGCGTCAAGACCCGGATCGCCGCCGGGTCGGGTCACCGCGGGCTGATCTGGAAACGCAACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1900055 GO:1900057 GO:1900140 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

10.27

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	82 - 152	1e-19	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45210 AT3G60690
fragaria_vesca	FvH4_7g11280 FvH4_7g11280
malus_domestica	MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica	Prupe.2G140600_v2.0.a1
pyrus_communis	pycom07g10730
rosa_chinensis	RchiOBHm_Chr1g0349431
rosa_laevigata	RLG00000028549
rosa_multiflora	Rmu_sc0002495.1_g000006
rosa_rugosa	Rorug01G0203800
rosa_samantha	Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana	Rw1G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	486
AciI	CCGC	6 cut(s)	107, 119, 284, 468, 484, 486
AclWI	GGATC	1 cut(s)	470
AfaI	GTAC	2 cut(s)	131, 175
AfiI	CCNNNNNNNGG	4 cut(s)	212, 244, 325, 359
AjnI	CCWGG	1 cut(s)	279
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	6 cut(s)	25, 148, 169, 182, 226, 367
AluI	AGCT	6 cut(s)	25, 148, 169, 182, 226, 367
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	2 cut(s)	206, 406
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	223
AsuC2I	CCSGG	9 cut(s)	44, 87, 207, 208, 239, 407, 408, 460, 472
AsuHPI	GGTGA	6 cut(s)	40, 271, 308, 391, 409, 473
AvaI	CYCGRG	2 cut(s)	206, 406
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	106, 322
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	9 cut(s)	44, 87, 207, 208, 239, 407, 408, 460, 472
BfuAI	ACCTGC	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	224, 468
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	2 cut(s)	225, 469
BmeT110I	CYCGRG	2 cut(s)	206, 406
BmiI	GGNNCC	1 cut(s)	330
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuMI	CCSGG	9 cut(s)	44, 87, 207, 208, 239, 407, 408, 460, 472
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	206, 270, 406, 484
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 244, 325, 359
Bse118I	RCCGGY	2 cut(s)	96, 256
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	4 cut(s)	206, 270, 406, 484
BseLI	CCNNNNNNNGG	4 cut(s)	212, 244, 325, 359
BseMII	CTCAG	2 cut(s)	92, 161
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	328
BsiHKCI	CYCGRG	2 cut(s)	206, 406
BslFI	GGGAC	2 cut(s)	251, 288
BslI	CCNNNNNNNGG	4 cut(s)	212, 244, 325, 359
BsmFI	GGGAC	2 cut(s)	251, 288
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	206, 406
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	9, 462, 492
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	6 cut(s)	107, 119, 284, 468, 484, 486
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	93, 162
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	509
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	328
BsrFI	RCCGGY	2 cut(s)	96, 256
BssAI	RCCGGY	2 cut(s)	96, 256
BssECI	CCNNGG	4 cut(s)	206, 270, 406, 484
BssMI	GATC	3 cut(s)	9, 462, 492
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	265, 320
Bst6I	CTCTTC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	107, 167, 488
BstDEI	CTNAG	2 cut(s)	101, 170
BstDSI	CCRYGG	1 cut(s)	484
BstEII	GGTNACC	3 cut(s)	46, 259, 479
BstFNI	CGCG	1 cut(s)	486
BstKTI	GATC	3 cut(s)	12, 465, 495
BstMBI	GATC	3 cut(s)	9, 462, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	3 cut(s)	46, 259, 479
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	107, 167, 488
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	509
Cfr10I	RCCGGY	2 cut(s)	96, 256
Cfr42I	CCGCGG	1 cut(s)	487
Cfr9I	CCCGGG	2 cut(s)	206, 406
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	130, 174
CviAII	CATG	1 cut(s)	510
CviQI	GTAC	2 cut(s)	130, 174
DdeI	CTNAG	2 cut(s)	101, 170
DpnI	GATC	3 cut(s)	11, 464, 494
DpnII	GATC	3 cut(s)	9, 462, 492
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	107
Eco88I	CYCGRG	2 cut(s)	206, 406
Eco91I	GGTNACC	3 cut(s)	46, 259, 479
EcoO65I	GGTNACC	3 cut(s)	46, 259, 479
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	513
FaiI	YATR	5 cut(s)	193, 219, 221, 422, 511
FaqI	GGGAC	2 cut(s)	251, 288
FatI	CATG	1 cut(s)	509
FauI	CCCGC	2 cut(s)	114, 479
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	224, 468
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	224, 468
GluI	GCNGC	2 cut(s)	224, 468
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	380
HgaI	GACGC	1 cut(s)	439
Hin1II	CATG	1 cut(s)	513
HinfI	GANTC	3 cut(s)	18, 36, 414
HphI	GGTGA	6 cut(s)	40, 271, 308, 391, 409, 473
Hpy166II	GTNNAC	2 cut(s)	289, 399
Hpy188I	TCNGA	7 cut(s)	14, 29, 68, 234, 372, 432, 439
Hpy188III	TCNNGA	3 cut(s)	454, 496, 510
Hpy8I	GTNNAC	2 cut(s)	289, 399
HpyCH4III	ACNGT	2 cut(s)	265, 320
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	126, 198, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	101, 170
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	513
KspI	CCGCGG	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	9, 462, 492
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	46, 259, 479
MalI	GATC	3 cut(s)	11, 464, 494
MboI	GATC	3 cut(s)	9, 462, 492
MboII	GAAGA	3 cut(s)	52, 55, 349
MhlI	GDGCHC	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	4 cut(s)	8, 121, 238, 370
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	3 cut(s)	169, 226, 486
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	9 cut(s)	44, 87, 207, 208, 239, 407, 408, 460, 472
NdeII	GATC	3 cut(s)	9, 462, 492
NlaIII	CATG	1 cut(s)	513
NlaIV	GGNNCC	1 cut(s)	330
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	3 cut(s)	46, 259, 479
OliI	CACNNNNGTG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	18, 414
PkrI	GCNGC	2 cut(s)	225, 469
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	3 cut(s)	46, 259, 479
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	370
PvuII	CAGCTG	2 cut(s)	169, 226
RsaI	GTAC	2 cut(s)	131, 175
RsaNI	GTAC	2 cut(s)	130, 174
RseI	CAYNNNNRTG	1 cut(s)	408
SacII	CCGCGG	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	224, 468
Sau3AI	GATC	3 cut(s)	9, 462, 492
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	9 cut(s)	27, 131, 150, 171, 184, 228, 282, 294, 369
SfaNI	GCATC	1 cut(s)	207
Sfr303I	CCGCGG	1 cut(s)	487
SgrBI	CCGCGG	1 cut(s)	487
SmaI	CCCGGG	2 cut(s)	208, 408
SmiMI	CAYNNNNRTG	1 cut(s)	408
SsiI	CCGC	6 cut(s)	107, 119, 284, 468, 484, 486
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	265, 320
TaiI	ACGT	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	350
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	18, 414
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	3 cut(s)	46, 259, 479
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	3 cut(s)	46, 259, 479
TspMI	CCCGGG	2 cut(s)	206, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmaI	CCCGGG	2 cut(s)	206, 406
XmiI	GTMKAC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.