pycom07g10730

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015259
Physical Location & Seq
Reverse (-)
10912762 .. 10913277
516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10730.1

Sequence Viewer

Length: 516 bp
ATGGCAAAATTCAGAGGATTCAAGCTCGGAAAGCGCCTTTGCCCGGTCATCCGGTGGTTCTTCGTCCGTACGATCCGACACGAATATACCAGGCTCAACCCGGGTTCTTCCTCCTCAGCTTGCAGCTACAAACCCATGTCGAAGCTGCTCACGTGGGGCCGGAAGCTATCCGCTGGCGCCAAATCTCTGTGCTGCAGCAAATCCGGGTCGGGTTACAAGCAGTTGGGTCAAAGCCCGGTTGAGAAAAACAAGCCTGTTACGGTTCCGAAGGGACATCTGGCTGTATACGTGGGCCAAAAAGACGGTGACTTTCAGAGAGTTTTGGTGCCCGTCATTTACTTTAACCATCCCCTGTTCGGGCAGCTTCTGAGAGAGGCTGAGGAGGAGTACGGTTATCAGCACGACGGCGGAATCACCATACCCTGCCCGATGTCGGACTTTGAGAGAGTCAAGACCCGGATCGCCGCCGGGTCGGGTCAACGGAGGCTGACGTGGAAGCGCAGCGCCACGCTTTAG

Protein Analysis

172

Amino Acids

19.23

Weight (kDa)

10.1

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 79 - 151 2.1e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45210 AT3G60690
fragaria_vesca FvH4_7g11280 FvH4_7g11280
malus_domestica MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica Prupe.2G140600_v2.0.a1
pyrus_communis pycom07g10730
rosa_chinensis RchiOBHm_Chr1g0349431
rosa_laevigata RLG00000028549
rosa_multiflora Rmu_sc0002495.1_g000006
rosa_rugosa Rorug01G0203800
rosa_samantha Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana Rw1G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 176, 325
AccI GTMKAC 1 cut(s) 285
AciI CCGC 3 cut(s) 171, 408, 465
AclWI GGATC 2 cut(s) 67, 467
AcsI RAATTY 1 cut(s) 8
AcvI CACGTG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 70, 389
AfiI CCNNNNNNNGG 4 cut(s) 43, 356, 357, 433
AgsI TTSAA 1 cut(s) 22
AjiI CACGTC 1 cut(s) 492
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 6 cut(s) 25, 119, 126, 145, 166, 364
AluI AGCT 6 cut(s) 25, 119, 126, 145, 166, 364
AlwI GGATC 2 cut(s) 67, 467
AlwNI CAGNNNCTG 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 2 cut(s) 157, 292
ApeKI GCWGC 6 cut(s) 123, 145, 192, 195, 361, 501
ApoI RAATTY 1 cut(s) 8
AspLEI GCGC 4 cut(s) 36, 179, 501, 506
AspS9I GGNCC 2 cut(s) 157, 292
AsuC2I CCSGG 7 cut(s) 44, 101, 102, 205, 236, 457, 469
AsuHPI GGTGA 2 cut(s) 317, 406
AvaI CYCGRG 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 2 cut(s) 176, 325
BbrPI CACGTG 1 cut(s) 153
BbvCI CCTCAGC 2 cut(s) 115, 378
BbvI GCAGC 5 cut(s) 132, 135, 179, 207, 373
BccI CCATC 1 cut(s) 354
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 7 cut(s) 44, 101, 102, 205, 236, 457, 469
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 3 cut(s) 37, 180, 507
BisI GCNGC 7 cut(s) 124, 146, 193, 196, 362, 465, 502
BlsI GCNGC 7 cut(s) 125, 147, 194, 197, 363, 466, 503
Bme1390I CCNGG 8 cut(s) 44, 91, 101, 102, 205, 236, 457, 469
BmeT110I CYCGRG 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 157, 292
BmiI GGNNCC 4 cut(s) 158, 178, 264, 327
BmrFI CCNGG 8 cut(s) 44, 91, 101, 102, 205, 236, 457, 469
Bpu10I CCTNAGC 2 cut(s) 115, 378
BpuMI CCSGG 7 cut(s) 44, 101, 102, 205, 236, 457, 469
BsaAI YACGTR 2 cut(s) 153, 289
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 356, 357, 433
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 48, 346
BseLI CCNNNNNNNGG 4 cut(s) 43, 356, 357, 433
BseMII CTCAG 3 cut(s) 129, 359, 369
BseRI GAGGAG 3 cut(s) 103, 395, 398
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 5 cut(s) 132, 135, 179, 207, 373
BshFI GGCC 2 cut(s) 159, 294
BshNI GGYRCC 2 cut(s) 176, 325
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 8 cut(s) 44, 52, 101, 160, 204, 236, 457, 468
BsiWI CGTACG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 4 cut(s) 43, 356, 357, 433
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 159, 294
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 72, 459
BspACI CCGC 3 cut(s) 171, 408, 465
BspANI GGCC 2 cut(s) 159, 294
BspCNI CTCAG 3 cut(s) 128, 360, 370
BspLI GGNNCC 4 cut(s) 158, 178, 264, 327
BspMAI CTGCAG 1 cut(s) 197
BspPI GGATC 2 cut(s) 67, 467
BspT107I GGYRCC 2 cut(s) 176, 325
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 72, 459
BssNAI GTATAC 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 3 cut(s) 262, 305, 392
BstACI GRCGYC 1 cut(s) 177
BstBAI YACGTR 2 cut(s) 153, 289
BstC8I GCNNGC 2 cut(s) 121, 175
BstDEI CTNAG 3 cut(s) 115, 368, 378
BstF5I GGATG 2 cut(s) 48, 346
BstH2I RGCGCY 3 cut(s) 37, 180, 507
BstHHI GCGC 4 cut(s) 36, 179, 501, 506
BstKTI GATC 2 cut(s) 75, 462
BstMBI GATC 2 cut(s) 72, 459
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 8 cut(s) 42, 89, 99, 100, 203, 234, 455, 467
BstSFI CTRYAG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 5 cut(s) 132, 135, 179, 207, 373
BstZ17I GTATAC 1 cut(s) 286
BsuRI GGCC 2 cut(s) 159, 294
BtrI CACGTC 1 cut(s) 492
BtsCI GGATG 2 cut(s) 48, 346
Cac8I GCNNGC 2 cut(s) 121, 175
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 4 cut(s) 36, 179, 501, 506
Cfr13I GGNCC 2 cut(s) 157, 292
Cfr9I CCCGGG 1 cut(s) 100
Csp6I GTAC 2 cut(s) 69, 388
CviAII CATG 1 cut(s) 136
CviQI GTAC 2 cut(s) 69, 388
DdeI CTNAG 3 cut(s) 115, 368, 378
DinI GGCGCC 1 cut(s) 178
DpnI GATC 2 cut(s) 74, 461
DpnII GATC 2 cut(s) 72, 459
EciI GGCGGA 1 cut(s) 423
Eco72I CACGTG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 89
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 87, 137, 286, 419
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 7 cut(s) 124, 146, 193, 196, 362, 465, 502
FokI GGATG 2 cut(s) 35, 333
Fsp4HI GCNGC 7 cut(s) 124, 146, 193, 196, 362, 465, 502
GlaI GCGC 4 cut(s) 35, 178, 500, 505
GluI GCNGC 7 cut(s) 124, 146, 193, 196, 362, 465, 502
HaeII RGCGCY 3 cut(s) 37, 180, 507
HaeIII GGCC 2 cut(s) 159, 294
HapII CCGG 8 cut(s) 44, 52, 101, 160, 204, 236, 457, 468
HhaI GCGC 4 cut(s) 36, 179, 501, 506
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 4 cut(s) 34, 177, 499, 504
HinP1I GCGC 4 cut(s) 34, 177, 499, 504
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HinfI GANTC 3 cut(s) 18, 411, 447
HpaII CCGG 8 cut(s) 44, 52, 101, 160, 204, 236, 457, 468
HphI GGTGA 2 cut(s) 317, 406
Hpy166II GTNNAC 2 cut(s) 286, 479
Hpy188I TCNGA 7 cut(s) 14, 29, 77, 267, 315, 369, 436
Hpy188III TCNNGA 1 cut(s) 451
Hpy8I GTNNAC 2 cut(s) 286, 479
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 3 cut(s) 262, 305, 392
HpyCH4IV ACGT 3 cut(s) 152, 288, 491
HpyCH4V TGCA 2 cut(s) 123, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 115, 368, 378
HpySE526I ACGT 3 cut(s) 152, 288, 491
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 4 cut(s) 34, 177, 499, 504
KasI GGCGCC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 72, 459
Lsp1109I GCAGC 5 cut(s) 132, 135, 179, 207, 373
MaeII ACGT 3 cut(s) 152, 288, 491
MaeIII GTNAC 3 cut(s) 212, 256, 305
MalI GATC 2 cut(s) 74, 461
MboI GATC 2 cut(s) 72, 459
MboII GAAGA 2 cut(s) 52, 99
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 8
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 2 cut(s) 100, 414
MnlI CCTC 7 cut(s) 8, 121, 124, 367, 373, 376, 477
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 8 cut(s) 44, 52, 101, 160, 204, 236, 457, 468
MspR9I CCNGG 8 cut(s) 44, 91, 101, 102, 205, 236, 457, 469
MteI GCGCNGCGC 1 cut(s) 502
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 31
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 7 cut(s) 44, 101, 102, 205, 236, 457, 469
NdeII GATC 2 cut(s) 72, 459
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 4 cut(s) 158, 178, 264, 327
NmuCI GTSAC 1 cut(s) 305
PfeI GAWTC 2 cut(s) 18, 411
Pfl23II CGTACG 1 cut(s) 68
PkrI GCNGC 7 cut(s) 125, 147, 194, 197, 363, 466, 503
PleI GAGTC 1 cut(s) 455
PluTI GGCGCC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 153
PmlI CACGTG 1 cut(s) 153
PpsI GAGTC 1 cut(s) 455
Ppu21I YACGTR 2 cut(s) 153, 289
Psp6I CCWGG 1 cut(s) 89
PspCI CACGTG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 89
PspLI CGTACG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 158, 178, 264, 327
PspPI GGNCC 2 cut(s) 157, 292
PstI CTGCAG 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 367
RsaI GTAC 2 cut(s) 70, 389
RsaNI GTAC 2 cut(s) 69, 388
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 7 cut(s) 124, 146, 193, 196, 362, 465, 502
Sau3AI GATC 2 cut(s) 72, 459
Sau96I GGNCC 2 cut(s) 157, 292
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 8 cut(s) 44, 91, 101, 102, 205, 236, 457, 469
SduI GDGCHC 1 cut(s) 330
SetI ASST 9 cut(s) 27, 121, 128, 147, 155, 168, 291, 366, 494
SfcI CTRYAG 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 178
SmaI CCCGGG 1 cut(s) 102
Sse9I AATT 1 cut(s) 8
SsiI CCGC 3 cut(s) 171, 408, 465
SspDI GGCGCC 1 cut(s) 176
StyD4I CCNGG 8 cut(s) 42, 89, 99, 100, 203, 234, 455, 467
TaaI ACNGT 3 cut(s) 262, 305, 392
TaiI ACGT 3 cut(s) 155, 291, 494
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 18, 411
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 6 cut(s) 123, 145, 192, 195, 361, 501
Tsp45I GTSAC 1 cut(s) 305
TspGWI ACGGA 2 cut(s) 56, 496
TspMI CCCGGG 1 cut(s) 100
XapI RAATTY 1 cut(s) 8
XmaI CCCGGG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.