Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015259

Physical Location & Seq

Genomic Coordinates Reverse (-)

20662654 .. 20663172

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1205700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAGGTTCAGAGGATTCAAGCTCGGAAAGCGCCTTTGCCGGGTCAGCCGTTGGTTCTTCGTCCGTGGGACCCGAACCCGACCCGAATATGCCCGGCTCAACCCGGGTTCTCCCTCGGCTTGCAGCTACAAACCCATGTCAAGGCTGCTCACCTGGGGTCGGAAGCTGTCCGCTGGGGCTAAATCTTTGTGCTGCAGCAAGCCAGGGTCGGGTTACAAGCGGTTGGGTCAGAACCCGGTTGAGAAAAACAAGCCTGTACCGGTGCCGAAGGGACATCTAGCTGTATACGTGGGCCAAAAAGACGGCGACTTTCACCGAGTTTTGGTGCCGGTCATTTACTTTAACCATCCCCTGTTCGGGCAGCTTCTGAGAGAGGCCGAGGAGGAGTACGGGTATGAGCACGACGGCGGGATCACCATACCCTGCCCGATGTCGGACTTTGAGAGCGTCAAGACCCGGATCGCCGCCGGGTCTGGTCACCGGAGGCTGACTTGGAAGCGCAGCGCCACGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1900055 GO:1900057 GO:1900140 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

10.26

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	82 - 152	9.7e-21	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45210 AT3G60690
fragaria_vesca	FvH4_7g11280 FvH4_7g11280
malus_domestica	MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica	Prupe.2G140600_v2.0.a1
pyrus_communis	pycom07g10730
rosa_chinensis	RchiOBHm_Chr1g0349431
rosa_laevigata	RLG00000028549
rosa_multiflora	Rmu_sc0002495.1_g000006
rosa_rugosa	Rorug01G0203800
rosa_samantha	Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana	Rw1G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	265, 328
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	4 cut(s)	174, 223, 411, 468
AclWI	GGATC	2 cut(s)	422, 470
AfaI	GTAC	2 cut(s)	261, 392
AfiI	CCNNNNNNNGG	8 cut(s)	43, 144, 162, 212, 325, 359, 360, 436
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	155, 205
AluBI	AGCT	5 cut(s)	25, 129, 169, 284, 367
AluI	AGCT	5 cut(s)	25, 129, 169, 284, 367
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	422, 470
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	2 cut(s)	295, 378
ApeKI	GCWGC	6 cut(s)	126, 148, 195, 198, 364, 504
AsiGI	ACCGGT	1 cut(s)	262
AspLEI	GCGC	3 cut(s)	36, 504, 509
AspS9I	GGNCC	2 cut(s)	72, 295
AsuC2I	CCSGG	7 cut(s)	44, 97, 107, 108, 239, 460, 472
AsuHPI	GGTGA	4 cut(s)	145, 308, 409, 473
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	265, 328
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	5 cut(s)	135, 138, 182, 210, 376
BccI	CCATC	1 cut(s)	357
BceAI	ACGGC	3 cut(s)	36, 322, 424
BciT130I	CCWGG	2 cut(s)	157, 207
BcnI	CCSGG	7 cut(s)	44, 97, 107, 108, 239, 460, 472
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	2 cut(s)	37, 510
BisI	GCNGC	7 cut(s)	127, 149, 196, 199, 365, 468, 505
BlsI	GCNGC	7 cut(s)	128, 150, 197, 200, 366, 469, 506
Bme1390I	CCNGG	9 cut(s)	44, 97, 107, 108, 157, 207, 239, 460, 472
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	72, 295
BmiI	GGNNCC	4 cut(s)	73, 74, 267, 330
BmrFI	CCNGG	9 cut(s)	44, 97, 107, 108, 157, 207, 239, 460, 472
BpuMI	CCSGG	7 cut(s)	44, 97, 107, 108, 239, 460, 472
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	6 cut(s)	67, 106, 117, 156, 206, 381
BsaWI	WCCGGW	2 cut(s)	262, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	8 cut(s)	43, 144, 162, 212, 325, 359, 360, 436
Bse118I	RCCGGY	2 cut(s)	262, 331
BseBI	CCWGG	2 cut(s)	157, 207
BseDI	CCNNGG	6 cut(s)	67, 106, 117, 156, 206, 381
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	8 cut(s)	43, 144, 162, 212, 325, 359, 360, 436
BseMII	CTCAG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	398, 401
BseXI	GCAGC	5 cut(s)	135, 138, 182, 210, 376
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	2 cut(s)	297, 380
BshNI	GGYRCC	2 cut(s)	265, 328
BshTI	ACCGGT	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	9 cut(s)	43, 97, 107, 239, 263, 332, 460, 471, 484
BslFI	GGGAC	2 cut(s)	85, 288
BslI	CCNNNNNNNGG	8 cut(s)	43, 144, 162, 212, 325, 359, 360, 436
BsmFI	GGGAC	2 cut(s)	85, 288
BsnI	GGCC	2 cut(s)	297, 380
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	414, 462
BspACI	CCGC	4 cut(s)	174, 223, 411, 468
BspANI	GGCC	2 cut(s)	297, 380
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	73, 74, 267, 330
BspMAI	CTGCAG	1 cut(s)	200
BspPI	GGATC	2 cut(s)	422, 470
BspT107I	GGYRCC	2 cut(s)	265, 328
BsrFI	RCCGGY	2 cut(s)	262, 331
BssAI	RCCGGY	2 cut(s)	262, 331
BssECI	CCNNGG	6 cut(s)	67, 106, 117, 156, 206, 381
BssMI	GATC	2 cut(s)	414, 462
BssNAI	GTATAC	1 cut(s)	289
Bst1107I	GTATAC	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	157, 207
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	124, 203
BstDEI	CTNAG	1 cut(s)	371
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	349
BstH2I	RGCGCY	2 cut(s)	37, 510
BstHHI	GCGC	3 cut(s)	36, 504, 509
BstKTI	GATC	2 cut(s)	417, 465
BstMBI	GATC	2 cut(s)	414, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 48
BstNI	CCWGG	2 cut(s)	157, 207
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	9 cut(s)	42, 95, 105, 106, 155, 205, 237, 458, 470
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	5 cut(s)	135, 138, 182, 210, 376
BstZ17I	GTATAC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	297, 380
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	124, 203
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	3 cut(s)	36, 504, 509
Cfr10I	RCCGGY	2 cut(s)	262, 331
Cfr13I	GGNCC	2 cut(s)	72, 295
Cfr9I	CCCGGG	1 cut(s)	106
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	260, 391
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	1 cut(s)	139
CviQI	GTAC	2 cut(s)	260, 391
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	2 cut(s)	416, 464
DpnII	GATC	2 cut(s)	414, 462
Eco47I	GGWCC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	106
Eco91I	GGTNACC	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	72
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	155, 205
FaeI	CATG	1 cut(s)	142
FaiI	YATR	5 cut(s)	93, 140, 289, 399, 422
FaqI	GGGAC	2 cut(s)	85, 288
FatI	CATG	1 cut(s)	138
FauI	CCCGC	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	7 cut(s)	127, 149, 196, 199, 365, 468, 505
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	7 cut(s)	127, 149, 196, 199, 365, 468, 505
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	3 cut(s)	35, 503, 508
GluI	GCNGC	7 cut(s)	127, 149, 196, 199, 365, 468, 505
GsaI	CCCAGC	1 cut(s)	180
HaeII	RGCGCY	2 cut(s)	37, 510
HaeIII	GGCC	2 cut(s)	297, 380
HapII	CCGG	9 cut(s)	43, 97, 107, 239, 263, 332, 460, 471, 484
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	3 cut(s)	36, 504, 509
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	3 cut(s)	34, 502, 507
HinP1I	GCGC	3 cut(s)	34, 502, 507
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	9 cut(s)	43, 97, 107, 239, 263, 332, 460, 471, 484
HphI	GGTGA	4 cut(s)	145, 308, 409, 473
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	6 cut(s)	14, 29, 165, 234, 372, 439
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	126, 198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 48
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	3 cut(s)	34, 502, 507
KflI	GGGWCCC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	414, 462
Lsp1109I	GCAGC	5 cut(s)	135, 138, 182, 210, 376
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	215, 479
MalI	GATC	2 cut(s)	416, 464
MboI	GATC	2 cut(s)	414, 462
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	405
MmeI	TCCRAC	2 cut(s)	143, 417
MnlI	CCTC	6 cut(s)	8, 127, 370, 376, 379, 480
MseI	TTAA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	9 cut(s)	43, 97, 107, 239, 263, 332, 460, 471, 484
MspR9I	CCNGG	9 cut(s)	44, 97, 107, 108, 157, 207, 239, 460, 472
MteI	GCGCNGCGC	1 cut(s)	505
MvaI	CCWGG	2 cut(s)	157, 207
MwoI	GCNNNNNNNGC	2 cut(s)	31, 48
NciI	CCSGG	7 cut(s)	44, 97, 107, 108, 239, 460, 472
NdeII	GATC	2 cut(s)	414, 462
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	4 cut(s)	73, 74, 267, 330
NmeAIII	GCCGAG	2 cut(s)	98, 406
NmuCI	GTSAC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	7 cut(s)	128, 150, 197, 200, 366, 469, 506
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	155, 205
PspEI	GGTNACC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	155, 205
PspN4I	GGNNCC	4 cut(s)	73, 74, 267, 330
PspPI	GGNCC	2 cut(s)	72, 295
PspPPI	RGGWCCY	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	370
RsaI	GTAC	2 cut(s)	261, 392
RsaNI	GTAC	2 cut(s)	260, 391
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	7 cut(s)	127, 149, 196, 199, 365, 468, 505
Sau3AI	GATC	2 cut(s)	414, 462
Sau96I	GGNCC	2 cut(s)	72, 295
ScrFI	CCNGG	9 cut(s)	44, 97, 107, 108, 157, 207, 239, 460, 472
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	8 cut(s)	11, 27, 131, 158, 171, 286, 294, 369
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	72
SmaI	CCCGGG	1 cut(s)	108
SsiI	CCGC	4 cut(s)	174, 223, 411, 468
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	9 cut(s)	42, 95, 105, 106, 155, 205, 237, 458, 470
TaiI	ACGT	1 cut(s)	294
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	6 cut(s)	126, 148, 195, 198, 364, 504
Tsp45I	GTSAC	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	56
TspMI	CCCGGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	72
XmaI	CCCGGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.