Rmu_sc0002495.1_g000006

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002495.1
OG0015259
Physical Location & Seq
Forward (+)
38802 .. 39314
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002495.1_g000006.1.cds

Sequence Viewer

Length: 513 bp
atgagaaagatcagaggaatcaagctcggaaaacgactctgccgggtcacccgatggttcttctgccgaaaacccacgacccgacccggataccaccggctgagcccgccttcatctccgccgtgcaagtacaagccgattgccaagctactcacttggggtcgccagctgagtaccggagctaaatctctatgttgcggtaaacccgggtcgggttatgtgcagctgggtcagaacccggttgagcaaaccaagccagtgacggtccccaagggacacctggcggtgtacgtgggtcaaaaagacggcgactttcaccgtgttttggtgcctgtgatttactttaaccacccactcttcggtcagcttctgaaagaggccgagcaagaatacgggttcacccacccgggtggtatcaccataccctgtccgatttcggactttgagagcgtcaagacccggatcgccgccgggtcgggtcaccgcaggctgatctggaaacgcaactcatga

Protein Analysis

170

Amino Acids

19.08

Weight (kDa)

10.3

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45210 AT3G60690
fragaria_vesca FvH4_7g11280 FvH4_7g11280
malus_domestica MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica Prupe.2G140600_v2.0.a1
pyrus_communis pycom07g10730
rosa_chinensis RchiOBHm_Chr1g0349431
rosa_laevigata RLG00000028549
rosa_multiflora Rmu_sc0002495.1_g000006
rosa_rugosa Rorug01G0203800
rosa_samantha Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana Rw1G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AciI CCGC 6 cut(s) 107, 119, 198, 284, 468, 484
AclWI GGATC 1 cut(s) 470
AfaI GTAC 3 cut(s) 131, 175, 290
AfiI CCNNNNNNNGG 3 cut(s) 212, 325, 359
AjnI CCWGG 1 cut(s) 279
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 6 cut(s) 25, 148, 169, 182, 226, 367
AluI AGCT 6 cut(s) 25, 148, 169, 182, 226, 367
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 2 cut(s) 206, 406
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
AsuHPI GGTGA 5 cut(s) 40, 308, 391, 409, 473
AvaI CYCGRG 2 cut(s) 206, 406
AvaII GGWCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 48
BceAI ACGGC 2 cut(s) 106, 322
BciT130I CCWGG 1 cut(s) 281
BciVI GTATCC 1 cut(s) 83
BcnI CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
BfuI GTATCC 1 cut(s) 83
BisI GCNGC 2 cut(s) 224, 468
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 225, 469
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 206, 406
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 267, 330
Bpu1102I GCTNAGC 1 cut(s) 101
BpuMI CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 206, 270, 406
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 325, 359
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 206, 270, 406
BseLI CCNNNNNNNGG 3 cut(s) 212, 325, 359
BseMII CTCAG 2 cut(s) 92, 161
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 328
BsiHKCI CYCGRG 2 cut(s) 206, 406
BsiSI CCGG 9 cut(s) 43, 87, 97, 177, 207, 239, 407, 460, 471
BslFI GGGAC 2 cut(s) 251, 288
BslI CCNNNNNNNGG 3 cut(s) 212, 325, 359
BsmFI GGGAC 2 cut(s) 251, 288
BsnI GGCC 1 cut(s) 380
BsoBI CYCGRG 2 cut(s) 206, 406
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 9, 462, 492
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 6 cut(s) 107, 119, 198, 284, 468, 484
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 93, 162
BspHI TCATGA 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 267, 330
BspPI GGATC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 3 cut(s) 206, 270, 406
BssMI GATC 3 cut(s) 9, 462, 492
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 265, 320
Bst6I CTCTTC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 107, 167, 488
BstDEI CTNAG 2 cut(s) 101, 170
BstEII GGTNACC 2 cut(s) 46, 479
BstKTI GATC 3 cut(s) 12, 465, 495
BstMBI GATC 3 cut(s) 9, 462, 492
BstMWI GCNNNNNNNGC 2 cut(s) 106, 253
BstNI CCWGG 1 cut(s) 281
BstPI GGTNACC 2 cut(s) 46, 479
BstV1I GCAGC 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 107, 167, 488
CaiI CAGNNNCTG 1 cut(s) 370
CciI TCATGA 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 265
Cfr9I CCCGGG 2 cut(s) 206, 406
CseI GACGC 1 cut(s) 439
Csp6I GTAC 3 cut(s) 130, 174, 289
CviAII CATG 1 cut(s) 510
CviQI GTAC 3 cut(s) 130, 174, 289
DdeI CTNAG 2 cut(s) 101, 170
DpnI GATC 3 cut(s) 11, 464, 494
DpnII GATC 3 cut(s) 9, 462, 492
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 265
Eco88I CYCGRG 2 cut(s) 206, 406
Eco91I GGTNACC 2 cut(s) 46, 479
EcoO65I GGTNACC 2 cut(s) 46, 479
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 513
FaiI YATR 4 cut(s) 193, 219, 422, 511
FaqI GGGAC 2 cut(s) 251, 288
FatI CATG 1 cut(s) 509
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 224, 468
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 224, 468
GluI GCNGC 2 cut(s) 224, 468
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 380
HapII CCGG 9 cut(s) 43, 87, 97, 177, 207, 239, 407, 460, 471
HgaI GACGC 1 cut(s) 439
Hin1II CATG 1 cut(s) 513
HinfI GANTC 2 cut(s) 18, 36
HpaII CCGG 9 cut(s) 43, 87, 97, 177, 207, 239, 407, 460, 471
HphI GGTGA 5 cut(s) 40, 308, 391, 409, 473
Hpy166II GTNNAC 3 cut(s) 203, 289, 399
Hpy188I TCNGA 6 cut(s) 14, 29, 234, 372, 432, 439
Hpy188III TCNNGA 3 cut(s) 454, 496, 510
Hpy8I GTNNAC 3 cut(s) 203, 289, 399
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 265, 320
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 126, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 253
HpyF3I CTNAG 2 cut(s) 101, 170
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 513
Kzo9I GATC 3 cut(s) 9, 462, 492
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 46, 259, 479
MalI GATC 3 cut(s) 11, 464, 494
MboI GATC 3 cut(s) 9, 462, 492
MboII GAAGA 2 cut(s) 52, 349
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 2 cut(s) 8, 370
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 169, 226
MspI CCGG 9 cut(s) 43, 87, 97, 177, 207, 239, 407, 460, 471
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 106, 253
NciI CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
NdeII GATC 3 cut(s) 9, 462, 492
NlaIII CATG 1 cut(s) 513
NlaIV GGNNCC 2 cut(s) 267, 330
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 46, 259, 479
OliI CACNNNNGTG 1 cut(s) 408
PagI TCATGA 1 cut(s) 509
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 225, 469
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 2 cut(s) 46, 479
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 267, 330
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 370
PvuII CAGCTG 2 cut(s) 169, 226
RsaI GTAC 3 cut(s) 131, 175, 290
RsaNI GTAC 3 cut(s) 130, 174, 289
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 224, 468
Sau3AI GATC 3 cut(s) 9, 462, 492
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 30
SduI GDGCHC 1 cut(s) 107
SetI ASST 8 cut(s) 27, 150, 171, 184, 228, 282, 294, 369
SinI GGWCC 1 cut(s) 265
SmaI CCCGGG 2 cut(s) 208, 408
SmiMI CAYNNNNRTG 1 cut(s) 408
SsiI CCGC 6 cut(s) 107, 119, 198, 284, 468, 484
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 265, 320
TaiI ACGT 1 cut(s) 294
TaqII GACCGA 1 cut(s) 350
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 3 cut(s) 46, 259, 479
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 3 cut(s) 46, 259, 479
TspDTI ATGAA 1 cut(s) 102
TspMI CCCGGG 2 cut(s) 206, 406
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmaI CCCGGG 2 cut(s) 206, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.