Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015259

Physical Location & Seq

Genomic Coordinates Forward (+)

14414803 .. 14415318

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1117400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCAAAATTCAGGAGATTCAAGCTCGGAAAGCGCCTTTGCCGGGTCACCCGGTGGTTCTTCGTCCGTACGACCCGACCCGAATATACCCGGCTCAACCCGGGTTCTTCCTCCTCAGCTTGCAGCTACAAACCCATGTCAAAGCTGCTCACGTGGGGCTGGAAGCTGTCCGCTGGAGCCAAATCTCTGTGCTGCAGCAAATCCGGGTCGGGTTACAAGCAGTTGGGTCAAAGCCCGGTTGAGAAAAACAAGCCTGTTACGGTTCCGAAGGGACATCTGGCTGTATACGTGGGCCAAAAGGACGGTGACTTTCAGAGAGTTTTGGTGCCCGTCATTTACTTTAACCATCCCCTGTTCGGGCAGCTTCTGAGAGAGGCTGAGGAGGAGTACGGTTATCAGCACGACGGCGGAATCACCATACCCTGCCCGATGTCGGACTTTGAGAGCGTCAAGACCCGGATCGCCGCCGGGTCGGGTCAACGGAGGCTGACGTGGAAGCGCAGCGCCACGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1900055 GO:1900057 GO:1900140 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

172

Amino Acids

19.28

Weight (kDa)

10.1

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	68 - 151	2.4e-21	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45210 AT3G60690
fragaria_vesca	FvH4_7g11280 FvH4_7g11280
malus_domestica	MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica	Prupe.2G140600_v2.0.a1
pyrus_communis	pycom07g10730
rosa_chinensis	RchiOBHm_Chr1g0349431
rosa_laevigata	RLG00000028549
rosa_multiflora	Rmu_sc0002495.1_g000006
rosa_rugosa	Rorug01G0203800
rosa_samantha	Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana	Rw1G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	3 cut(s)	171, 408, 465
AclWI	GGATC	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	8
AcvI	CACGTG	1 cut(s)	153
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	70, 389
AfiI	CCNNNNNNNGG	4 cut(s)	43, 356, 357, 433
AgsI	TTSAA	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	492
AluBI	AGCT	6 cut(s)	25, 119, 126, 145, 166, 364
AluI	AGCT	6 cut(s)	25, 119, 126, 145, 166, 364
AlwI	GGATC	1 cut(s)	467
AlwNI	CAGNNNCTG	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	6 cut(s)	123, 145, 192, 195, 361, 501
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	36, 501, 506
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
AsuHPI	GGTGA	3 cut(s)	40, 317, 406
AvaI	CYCGRG	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	325
BbrPI	CACGTG	1 cut(s)	153
BbvCI	CCTCAGC	2 cut(s)	115, 378
BbvI	GCAGC	5 cut(s)	132, 135, 179, 207, 373
BccI	CCATC	1 cut(s)	354
BceAI	ACGGC	1 cut(s)	421
BcnI	CCSGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	2 cut(s)	37, 507
BisI	GCNGC	7 cut(s)	124, 146, 193, 196, 362, 465, 502
BlsI	GCNGC	7 cut(s)	125, 147, 194, 197, 363, 466, 503
Bme1390I	CCNGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
BmeT110I	CYCGRG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	178, 264, 327
BmrFI	CCNGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	2 cut(s)	115, 378
BpuMI	CCSGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
BsaAI	YACGTR	2 cut(s)	153, 289
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 356, 357, 433
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	4 cut(s)	43, 356, 357, 433
BseMII	CTCAG	3 cut(s)	129, 359, 369
BseRI	GAGGAG	3 cut(s)	103, 395, 398
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	5 cut(s)	132, 135, 179, 207, 373
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	8 cut(s)	43, 52, 91, 101, 204, 236, 457, 468
BsiWI	CGTACG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	43, 356, 357, 433
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	459
BspACI	CCGC	3 cut(s)	171, 408, 465
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	3 cut(s)	128, 360, 370
BspLI	GGNNCC	3 cut(s)	178, 264, 327
BspMAI	CTGCAG	1 cut(s)	197
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	459
BssNAI	GTATAC	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	262, 305, 392
BstBAI	YACGTR	2 cut(s)	153, 289
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	115, 368, 378
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	346
BstH2I	RGCGCY	2 cut(s)	37, 507
BstHHI	GCGC	3 cut(s)	36, 501, 506
BstKTI	GATC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	459
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	9 cut(s)	42, 50, 89, 99, 100, 203, 234, 455, 467
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	132, 135, 179, 207, 373
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	3 cut(s)	36, 501, 506
Cfr13I	GGNCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	100
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	69, 388
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	2 cut(s)	69, 388
DdeI	CTNAG	3 cut(s)	115, 368, 378
DpnI	GATC	1 cut(s)	461
DpnII	GATC	1 cut(s)	459
DraIII	CACNNNGTG	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	423
Eco72I	CACGTG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	100
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
FaeI	CATG	1 cut(s)	139
FaiI	YATR	4 cut(s)	87, 137, 286, 419
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	7 cut(s)	124, 146, 193, 196, 362, 465, 502
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	7 cut(s)	124, 146, 193, 196, 362, 465, 502
GlaI	GCGC	3 cut(s)	35, 500, 505
GluI	GCNGC	7 cut(s)	124, 146, 193, 196, 362, 465, 502
GsuI	CTGGAG	1 cut(s)	195
HaeII	RGCGCY	2 cut(s)	37, 507
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	8 cut(s)	43, 52, 91, 101, 204, 236, 457, 468
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	3 cut(s)	36, 501, 506
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	3 cut(s)	34, 499, 504
HinP1I	GCGC	3 cut(s)	34, 499, 504
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HinfI	GANTC	2 cut(s)	18, 411
HpaII	CCGG	8 cut(s)	43, 52, 91, 101, 204, 236, 457, 468
HphI	GGTGA	3 cut(s)	40, 317, 406
Hpy166II	GTNNAC	2 cut(s)	286, 479
Hpy188I	TCNGA	5 cut(s)	29, 267, 315, 369, 436
Hpy188III	TCNNGA	2 cut(s)	13, 451
Hpy8I	GTNNAC	2 cut(s)	286, 479
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	262, 305, 392
HpyCH4IV	ACGT	3 cut(s)	152, 288, 491
HpyCH4V	TGCA	2 cut(s)	123, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	3 cut(s)	115, 368, 378
HpySE526I	ACGT	3 cut(s)	152, 288, 491
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	3 cut(s)	34, 499, 504
Kzo9I	GATC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	5 cut(s)	132, 135, 179, 207, 373
MaeII	ACGT	3 cut(s)	152, 288, 491
MaeIII	GTNAC	4 cut(s)	46, 212, 256, 305
MalI	GATC	1 cut(s)	461
MboI	GATC	1 cut(s)	459
MboII	GAAGA	2 cut(s)	52, 99
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	121, 124, 367, 373, 376, 477
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	8 cut(s)	43, 52, 91, 101, 204, 236, 457, 468
MspR9I	CCNGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
MteI	GCGCNGCGC	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
NdeII	GATC	1 cut(s)	459
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	3 cut(s)	178, 264, 327
NmuCI	GTSAC	2 cut(s)	46, 305
PfeI	GAWTC	2 cut(s)	18, 411
Pfl23II	CGTACG	1 cut(s)	68
PkrI	GCNGC	7 cut(s)	125, 147, 194, 197, 363, 466, 503
PmaCI	CACGTG	1 cut(s)	153
PmlI	CACGTG	1 cut(s)	153
Ppu21I	YACGTR	2 cut(s)	153, 289
PspCI	CACGTG	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	46
PspLI	CGTACG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	178, 264, 327
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	70, 389
RsaNI	GTAC	2 cut(s)	69, 388
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	7 cut(s)	124, 146, 193, 196, 362, 465, 502
Sau3AI	GATC	1 cut(s)	459
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	9 cut(s)	44, 52, 91, 101, 102, 205, 236, 457, 469
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	9 cut(s)	27, 121, 128, 147, 155, 168, 291, 366, 494
SfcI	CTRYAG	1 cut(s)	193
SmaI	CCCGGG	1 cut(s)	102
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	171, 408, 465
StyD4I	CCNGG	9 cut(s)	42, 50, 89, 99, 100, 203, 234, 455, 467
TaaI	ACNGT	3 cut(s)	262, 305, 392
TaiI	ACGT	3 cut(s)	155, 291, 494
TasI	AATT	1 cut(s)	8
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	18, 411
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	46, 305
TseI	GCWGC	6 cut(s)	123, 145, 192, 195, 361, 501
Tsp45I	GTSAC	2 cut(s)	46, 305
TspGWI	ACGGA	2 cut(s)	56, 496
TspMI	CCCGGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	8
XmaI	CCCGGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.