AT2G45420

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014318
Physical Location & Seq
Forward (+)
18718348 .. 18720729
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45420.1

Sequence Viewer

Length: 789 bp
ATGAGCGGTGGTGGGAACACAATCACTGCCGTGGGAGGCGGAGGTGGTGGTTGTGGTGGAGGAGGCAGCAGTGGGGGAGGAGGAAGTAGTGGCGGTGGTGGTGGTGGGCCATGTGGTGCTTGTAAGTTTCTAAGGAGGAAGTGTGTGCCGGGATGTATATTTGCACCGTACTTTGACTCCGAGCAAGGATCGGCTTATTTTGCGGCGGTGCATAAAGTGTTCGGAGCCAGTAACGTCTCGAAGCTTCTATTACACATACCGGTTCATCGAAGGTCCGATGCTGTCGTAACAATTTGCTATGAAGCTCAGGCTAGGATAAGGGATCCTATCTACGGTTGCGTCGCTCACATCTTTGCTCTTCAGCAACAGGTGGTGAATCTACAGGCAGAAGTTTCTTACTTACAAGCCCATTTGGCATCACTAGAGCTACCTCAACCGCAAACGCGGCCACAGCCTATGCCGCAACCGCAACCGCTCTTTTTCACTCCTCCTCCCCCTCTTGCCATAACCGATTTACCTGCATCAGTCTCACCCTTGCCCTCAACCTATGACCTAGCATCCATCTTCGATCAAACGACGTCTTCTTCGGCATGGGCCACGCAACAACGAAGATTCATTGATCCACGTCACCAATACGGTGTATCATCGTCTTCCTCTTCTGTCGCCGTGGGGCTCGGTGGTGAAAACAGTCATGACCTCCAAGCATTAGCACATGAACTCCTCCATAGACAAGGATCTCCTCCCCCGGCAGCTACCGACCACTCGCCGTCTCGAACTATGTCTAGATGA

Protein Analysis

262

Amino Acids

27.22

Weight (kDa)

8.2

Isoelectric Point (pI)

74.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 37 - 135 6.2e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45420 AT4G00220
fragaria_vesca FvH4_7g11990
malus_domestica MD02G1202500.v1.1
prunus_persica Prupe.2G146600_v2.0.a1
pyrus_communis pycom02g16570
rosa_chinensis RchiOBHm_Chr1g0350711
rosa_laevigata RLG00000028461
rosa_multiflora Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii Rroxscaffold_4G00304580
rosa_rugosa Rorug01G0213300
rosa_samantha Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana Rw1G019710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 526
AccBSI CCGCTC 2 cut(s) 6, 475
AccII CGCG 1 cut(s) 445
AclWI GGATC 5 cut(s) 196, 317, 330, 614, 742
AcoI YGGCCR 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 332
AgeI ACCGGT 1 cut(s) 259
AjiI CACGTC 1 cut(s) 626
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 4 cut(s) 244, 305, 427, 752
AluI AGCT 4 cut(s) 244, 305, 427, 752
Alw26I GTCTC 3 cut(s) 241, 532, 774
AlwI GGATC 5 cut(s) 196, 317, 330, 614, 742
AoxI GGCC 3 cut(s) 107, 446, 594
ApeKI GCWGC 2 cut(s) 66, 749
ArsI GACNNNNNNTTYG 2 cut(s) 568, 600
AsiGI ACCGGT 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 107, 273, 594
AsuC2I CCSGG 2 cut(s) 150, 746
AsuHPI GGTGA 4 cut(s) 385, 522, 620, 692
AvaII GGWCC 1 cut(s) 273
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 675
BbsI GAAGAC 2 cut(s) 573, 642
BbvI GCAGC 2 cut(s) 78, 761
BccI CCATC 1 cut(s) 569
BceAI ACGGC 3 cut(s) 14, 650, 751
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BcnI CCSGG 2 cut(s) 150, 746
BcoDI GTCTC 3 cut(s) 241, 532, 774
BfaI CTAG 4 cut(s) 312, 422, 554, 783
BfmI CTRYAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 5 cut(s) 67, 204, 446, 461, 750
BlsI GCNGC 5 cut(s) 68, 205, 447, 462, 751
Bme1390I CCNGG 2 cut(s) 150, 746
Bme18I GGWCC 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 107, 273, 594
BmiI GGNNCC 2 cut(s) 226, 324
BmrFI CCNGG 2 cut(s) 150, 746
BmsI GCATC 4 cut(s) 268, 425, 530, 566
BpiI GAAGAC 2 cut(s) 573, 642
Bpu10I CCTNAGC 1 cut(s) 306
BpuMI CCSGG 2 cut(s) 150, 746
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 30, 666, 744
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 8 cut(s) 127, 157, 161, 191, 475, 505, 702, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 30, 666, 744
BseGI GGATG 2 cut(s) 158, 557
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 6 cut(s) 75, 93, 477, 480, 710, 729
BseXI GCAGC 2 cut(s) 78, 761
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 3 cut(s) 109, 448, 596
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 3 cut(s) 149, 260, 746
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 3 cut(s) 241, 532, 774
BsmBI CGTCTC 2 cut(s) 241, 774
BsnI GGCC 3 cut(s) 109, 448, 596
Bsp1286I GDGCHC 1 cut(s) 675
Bsp143I GATC 5 cut(s) 188, 322, 568, 619, 734
BspANI GGCC 3 cut(s) 109, 448, 596
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 445
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 226, 324
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 5 cut(s) 196, 317, 330, 614, 742
BspQI GCTCTTC 1 cut(s) 363
BsrBI CCGCTC 2 cut(s) 6, 475
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 3 cut(s) 30, 666, 744
BssMI GATC 5 cut(s) 188, 322, 568, 619, 734
BssNI GRCGYC 1 cut(s) 578
Bst4CI ACNGT 4 cut(s) 168, 335, 638, 689
Bst6I CTCTTC 2 cut(s) 363, 661
BstACI GRCGYC 1 cut(s) 578
BstDEI CTNAG 2 cut(s) 131, 306
BstDSI CCRYGG 2 cut(s) 30, 666
BstF5I GGATG 2 cut(s) 158, 557
BstFNI CGCG 1 cut(s) 445
BstKTI GATC 5 cut(s) 191, 325, 571, 622, 737
BstMAI GTCTC 3 cut(s) 241, 532, 774
BstMBI GATC 5 cut(s) 188, 322, 568, 619, 734
BstMWI GCNNNNNNNGC 6 cut(s) 200, 413, 445, 451, 460, 466
BstSCI CCNGG 2 cut(s) 148, 744
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 78, 761
BstV2I GAAGAC 2 cut(s) 573, 642
BstX2I RGATCY 2 cut(s) 322, 734
BstYI RGATCY 2 cut(s) 322, 734
BsuRI GGCC 3 cut(s) 109, 448, 596
BtgI CCRYGG 2 cut(s) 30, 666
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 2 cut(s) 158, 557
BtsI GCAGTG 2 cut(s) 24, 76
BtsIMutI CAGTG 2 cut(s) 24, 76
BveI ACCTGC 1 cut(s) 526
CciI TCATGA 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 3 cut(s) 107, 273, 594
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 4 cut(s) 111, 591, 692, 713
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 131, 306
DpnI GATC 5 cut(s) 190, 324, 570, 621, 736
DpnII GATC 5 cut(s) 188, 322, 568, 619, 734
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 363, 661
EarI CTCTTC 2 cut(s) 363, 661
EciI GGCGGA 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 675
Esp3I CGTCTC 2 cut(s) 241, 774
FaeI CATG 4 cut(s) 114, 594, 695, 716
FatI CATG 4 cut(s) 110, 590, 691, 712
Fnu4HI GCNGC 5 cut(s) 67, 204, 446, 461, 750
FokI GGATG 2 cut(s) 165, 544
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 5 cut(s) 67, 204, 446, 461, 750
FspBI CTAG 4 cut(s) 312, 422, 554, 783
GluI GCNGC 5 cut(s) 67, 204, 446, 461, 750
HaeIII GGCC 3 cut(s) 109, 448, 596
HapII CCGG 3 cut(s) 149, 260, 746
HgaI GACGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 4 cut(s) 114, 594, 695, 716
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 3 cut(s) 176, 376, 612
HpaII CCGG 3 cut(s) 149, 260, 746
HphI GGTGA 4 cut(s) 385, 522, 620, 692
Hpy188I TCNGA 3 cut(s) 181, 224, 277
Hpy188III TCNNGA 4 cut(s) 238, 692, 771, 783
Hpy99I CGWCG 2 cut(s) 344, 580
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 4 cut(s) 168, 335, 638, 689
HpyCH4IV ACGT 3 cut(s) 234, 578, 625
HpyCH4V TGCA 3 cut(s) 164, 211, 521
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 413, 445, 451, 460, 466
HpyF3I CTNAG 2 cut(s) 131, 306
HpySE526I ACGT 3 cut(s) 234, 578, 625
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 4 cut(s) 114, 594, 695, 716
Kzo9I GATC 5 cut(s) 188, 322, 568, 619, 734
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 8 cut(s) 162, 241, 273, 293, 353, 368, 531, 759
Lsp1109I GCAGC 2 cut(s) 78, 761
LweI GCATC 4 cut(s) 268, 425, 530, 566
MaeI CTAG 4 cut(s) 312, 422, 554, 783
MaeII ACGT 3 cut(s) 234, 578, 625
MaeIII GTNAC 3 cut(s) 230, 286, 626
MalI GATC 5 cut(s) 190, 324, 570, 621, 736
MbiI CCGCTC 2 cut(s) 6, 475
MboI GATC 5 cut(s) 188, 322, 568, 619, 734
MboII GAAGA 7 cut(s) 350, 556, 573, 576, 621, 642, 648
MflI RGATCY 2 cut(s) 322, 734
MhlI GDGCHC 1 cut(s) 675
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 3 cut(s) 149, 260, 746
MspR9I CCNGG 2 cut(s) 150, 746
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 6 cut(s) 200, 413, 445, 451, 460, 466
NciI CCSGG 2 cut(s) 150, 746
NdeII GATC 5 cut(s) 188, 322, 568, 619, 734
NlaIII CATG 4 cut(s) 114, 594, 695, 716
NlaIV GGNNCC 2 cut(s) 226, 324
NmuCI GTSAC 1 cut(s) 626
OliI CACNNNNGTG 1 cut(s) 29
PagI TCATGA 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 376, 612
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 5 cut(s) 68, 205, 447, 462, 751
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 226, 324
PspPI GGNCC 3 cut(s) 107, 273, 594
PsuI RGATCY 2 cut(s) 322, 734
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 363
SatI GCNGC 5 cut(s) 67, 204, 446, 461, 750
Sau3AI GATC 5 cut(s) 188, 322, 568, 619, 734
Sau96I GGNCC 3 cut(s) 107, 273, 594
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 150, 746
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 4 cut(s) 268, 425, 530, 566
SfcI CTRYAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 291
SspMI CTAG 4 cut(s) 312, 422, 554, 783
StyD4I CCNGG 2 cut(s) 148, 744
TaaI ACNGT 4 cut(s) 168, 335, 638, 689
TaiI ACGT 3 cut(s) 237, 581, 628
TaqI TCGA 4 cut(s) 239, 268, 567, 772
TasI AATT 1 cut(s) 291
TauI GCSGC 3 cut(s) 206, 448, 463
TfiI GAWTC 2 cut(s) 376, 612
TscAI CASTG 2 cut(s) 31, 76
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 2 cut(s) 66, 749
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 4 cut(s) 254, 315, 604, 729
TspRI CASTG 2 cut(s) 31, 76
VpaK11BI GGWCC 1 cut(s) 273
XbaI TCTAGA 1 cut(s) 782
XspI CTAG 4 cut(s) 312, 422, 554, 783
ZraI GACGTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.