Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Reverse (-)

13753659 .. 13754138

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAAATCAATTCATTGTTGTGTGTGTTTTTTCTTTTTTGCGTTTACGGATTGTACATGCAGGTGGTGAATCTGCAAGCTGAGCTCTCATACTTACAAGCCCACCTAGCGACAATGGAGCTTCCATCACCACCACCTCCACCCCCTCCACCATCAGCAGCAGCACTCATTACCCCACCTCAATTCTCCATCTCAGACCTTCCATCAGCAGTCTCCTCCATGCCCGCTTCATACGATTTGTCCTCACTTTTCGAACCCATGGTCATGCAACCTTGGGCCATGCAACAGCGTGCGCTGCATGACCCGCGTCACCATCATCAATTCGGAGGCGGCAGTAGCGGTCCGGGTTCACCAGCTGGCGGTGGTGGTGGAGATCTTCAAAGTTTGGCTCGTGAACTACTTCATAGGCATAGCTCATCTCCATCACCTGGGTCTGTACCGTGCTCTGAGGGTTCACCATCTCATTCTCACCCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

160

Amino Acids

16.85

Weight (kDa)

6.27

Isoelectric Point (pI)

72.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccII	CGCG	1 cut(s)	307
AciI	CCGC	5 cut(s)	225, 305, 330, 339, 360
AfaI	GTAC	2 cut(s)	56, 438
AfiI	CCNNNNNNNGG	2 cut(s)	359, 428
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	5 cut(s)	80, 85, 121, 356, 414
AluI	AGCT	5 cut(s)	80, 85, 121, 356, 414
Alw21I	GWGCWC	2 cut(s)	87, 446
Alw26I	GTCTC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	3 cut(s)	158, 161, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	276, 341
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	7 cut(s)	79, 120, 302, 342, 417, 447, 461
AsuII	TTCGAA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	87, 446
BbvI	GCAGC	3 cut(s)	170, 173, 282
BccI	CCATC	7 cut(s)	133, 160, 197, 211, 321, 430, 466
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	4 cut(s)	159, 162, 296, 331
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	4 cut(s)	160, 163, 297, 332
Bme1390I	CCNGG	2 cut(s)	345, 429
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	276, 341
BmrFI	CCNGG	2 cut(s)	345, 429
BoxI	GACNNNNGTC	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	258, 272, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 428
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	258, 272, 428
BseLI	CCNNNNNNNGG	2 cut(s)	359, 428
BseMII	CTCAG	3 cut(s)	72, 207, 438
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	170, 173, 282
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	87, 446
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	359, 428
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	87, 446
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	373
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	5 cut(s)	225, 305, 330, 339, 360
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	73, 206, 439
BspFNI	CGCG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	258, 272, 428
BssMI	GATC	1 cut(s)	373
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	258, 272
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	441
BstAUI	TGTACA	1 cut(s)	54
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	78, 225, 291, 358
BstDEI	CTNAG	3 cut(s)	81, 193, 447
BstDSI	CCRYGG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 107, 295, 304, 336
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	343, 427
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	3 cut(s)	170, 173, 282
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	4 cut(s)	78, 225, 291, 358
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	276, 341
CpoI	CGGWCCG	1 cut(s)	341
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	55, 437
CspI	CGGWCCG	1 cut(s)	341
CviAII	CATG	6 cut(s)	58, 220, 259, 265, 280, 299
CviJI	RGCY	8 cut(s)	80, 85, 101, 121, 278, 356, 389, 414
CviKI_1	RGCY	8 cut(s)	80, 85, 101, 121, 278, 356, 389, 414
CviQI	GTAC	2 cut(s)	55, 437
DdeI	CTNAG	3 cut(s)	81, 193, 447
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	258, 272
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	258, 272
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	2 cut(s)	258, 272
FaeI	CATG	6 cut(s)	61, 223, 262, 268, 283, 302
FatI	CATG	6 cut(s)	57, 219, 258, 264, 279, 298
FauI	CCCGC	2 cut(s)	232, 312
Fnu4HI	GCNGC	4 cut(s)	159, 162, 296, 331
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	159, 162, 296, 331
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	4 cut(s)	159, 162, 296, 331
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	6 cut(s)	61, 223, 262, 268, 283, 302
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	7 cut(s)	79, 120, 302, 342, 417, 447, 461
Hpy166II	GTNNAC	4 cut(s)	46, 350, 395, 455
Hpy188I	TCNGA	3 cut(s)	196, 326, 448
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	4 cut(s)	46, 350, 395, 455
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4V	TGCA	5 cut(s)	61, 76, 268, 283, 298
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 107, 295, 304, 336
HpyF3I	CTNAG	3 cut(s)	81, 193, 447
Hsp92II	CATG	6 cut(s)	61, 223, 262, 268, 283, 302
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	47, 342, 357, 366, 414, 441
Lsp1109I	GCAGC	3 cut(s)	170, 173, 282
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	368
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	87, 446
MluCI	AATT	3 cut(s)	10, 182, 320
MnlI	CCTC	7 cut(s)	147, 156, 189, 226, 253, 320, 442
MroXI	GAANNNNTTC	1 cut(s)	399
MslI	CAYNNNNRTG	3 cut(s)	19, 62, 263
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	345, 429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	5 cut(s)	82, 107, 295, 304, 336
NciI	CCSGG	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	6 cut(s)	61, 223, 262, 268, 283, 302
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	160, 163, 297, 332
PshAI	GACNNNNGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	276, 341
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	56, 438
RsaNI	GTAC	2 cut(s)	55, 437
RseI	CAYNNNNRTG	3 cut(s)	19, 62, 263
Rsr2I	CGGWCCG	1 cut(s)	341
RsrII	CGGWCCG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	87
SatI	GCNGC	4 cut(s)	159, 162, 296, 331
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	276, 341
ScrFI	CCNGG	2 cut(s)	345, 429
SduI	GDGCHC	2 cut(s)	87, 446
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	3 cut(s)	19, 62, 263
Sse9I	AATT	3 cut(s)	10, 182, 320
SsiI	CCGC	5 cut(s)	225, 305, 330, 339, 360
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	343, 427
StyI	CCWWGG	2 cut(s)	258, 272
TaaI	ACNGT	1 cut(s)	441
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	10, 182, 320
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	158, 161, 295
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	17, 219, 392
TspGWI	ACGGA	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	341
XceI	RCATGY	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.