Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Reverse (-)

20086980 .. 20091374

Gene Structure 4395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1202500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATCCAACAAACCCTAATGGTGGTGATGGTAGTGGTGGAGGGAGCAGTAGTAGTGGTGGTGGCGGTACCGGCAGCGGCAGTCCATGTGGCGCGTGCAAATTTTTGAGGAGGAAGTGTGTGCCTGGGTGCATATTTGCACCCTACTTTGATTCGGAGCAAGGCGCGGCTCATTTTGCGGCGGTGCACAAGGTTTTCGGAGCCAGCAATGTCTCCAAGCTTCTTCTTCATATTCCAGTACATAAGCGGCTCGACGCCGTTGTCACCATATGTTACGAGGCTCAAGCCCGCCTTAGAGATCCAGTCTACGGCTGTGTTGCTCACATATTCGCTCTCCAACAACAGGTGGTGAATCTGCAAGCTGAGCTCTCATACTTACAAGCCCACCTAGCGACAATGGAGCTTCCATCACCACCACCTCCACCCCCACCACCATCAGCAGCAGCACTCATTACCCCACCTCAATTCTCCATCTCAGACCTTCCATCAGCAGTCTCCTCCATGCCCGCTTCATACGATTTGTCCTCACTTTTCGAACCCATGGTCATGCAACCTTGGTCCATGCAACAGCGTGCGTTGCATGACCTGCGTCACCATCATCAATTCGGAGGCGGCAGTAGCGGTCCGGGTTCACCAGCTGGCGGTGGTGGTGGAGATCTTCAAAGTTTGGCTCGTGAGCTACTTCATAGGCATAGCTCATCTCCATCACCTGGGTCTGTACCGTGCTCTGAGAGTTCACCATCTCATTCTCACCCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

254

Amino Acids

26.25

Weight (kDa)

7.23

Isoelectric Point (pI)

72.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	29 - 127	2.1e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	594
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	2 cut(s)	95, 167
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	3 cut(s)	70, 240, 720
AfiI	CCNNNNNNNGG	5 cut(s)	23, 308, 343, 641, 710
AgsI	TTSAA	1 cut(s)	662
AjnI	CCWGG	2 cut(s)	124, 709
AluBI	AGCT	7 cut(s)	220, 362, 367, 403, 638, 679, 696
AluI	AGCT	7 cut(s)	220, 362, 367, 403, 638, 679, 696
Alw21I	GWGCWC	3 cut(s)	189, 369, 728
Alw26I	GTCTC	2 cut(s)	217, 499
Alw44I	GTGCAC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	75, 440, 443
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
Asp718I	GGTACC	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	95, 167
AspS9I	GGNCC	2 cut(s)	558, 623
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	9 cut(s)	38, 256, 361, 402, 584, 624, 699, 729, 743
AsuII	TTCGAA	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	558, 623
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	672
Bbv12I	GWGCWC	3 cut(s)	189, 369, 728
BbvI	GCAGC	3 cut(s)	87, 452, 455
BccI	CCATC	8 cut(s)	23, 415, 442, 479, 493, 603, 712, 748
BceAI	ACGGC	2 cut(s)	242, 325
BciT130I	CCWGG	2 cut(s)	126, 711
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	2 cut(s)	217, 499
BfaI	CTAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	594
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	8 cut(s)	76, 79, 168, 180, 248, 441, 444, 613
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	8 cut(s)	77, 80, 169, 181, 249, 442, 445, 614
Bme1390I	CCNGG	3 cut(s)	126, 627, 711
Bme18I	GGWCC	2 cut(s)	558, 623
BmgT120I	GGNCC	2 cut(s)	558, 623
BmiI	GGNNCC	2 cut(s)	70, 202
BmrFI	CCNGG	3 cut(s)	126, 627, 711
BoxI	GACNNNNGTC	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	125, 540, 554, 710
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 103, 133
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 308, 343, 641, 710
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	236, 302
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	126, 711
BseDI	CCNNGG	4 cut(s)	125, 540, 554, 710
BseLI	CCNNNNNNNGG	5 cut(s)	23, 308, 343, 641, 710
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	354, 489, 720
BseNI	ACTGG	2 cut(s)	236, 302
BseRI	GAGGAG	2 cut(s)	124, 487
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	87, 452, 455
Bsh1236I	CGCG	2 cut(s)	95, 167
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	3 cut(s)	189, 369, 728
BsiSI	CCGG	2 cut(s)	72, 626
BslI	CCNNNNNNNGG	5 cut(s)	23, 308, 343, 641, 710
BsmAI	GTCTC	2 cut(s)	217, 499
Bsp119I	TTCGAA	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	189, 369, 728
Bsp143I	GATC	2 cut(s)	298, 655
Bsp1720I	GCTNAGC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	540
BspCNI	CTCAG	3 cut(s)	355, 488, 721
BspFNI	CGCG	2 cut(s)	95, 167
BspLI	GGNNCC	2 cut(s)	70, 202
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	293
BspT104I	TTCGAA	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	236, 302
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	125, 540, 554, 710
BssMI	GATC	2 cut(s)	298, 655
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	672
BssT1I	CCWWGG	2 cut(s)	540, 554
Bst2BI	CACGAG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	126, 711
Bst4CI	ACNGT	1 cut(s)	723
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	534
BstC8I	GCNNGC	7 cut(s)	97, 205, 289, 360, 507, 573, 640
BstDEI	CTNAG	4 cut(s)	293, 363, 475, 729
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	2 cut(s)	95, 167
BstHHI	GCGC	2 cut(s)	95, 167
BstKTI	GATC	2 cut(s)	301, 658
BstMAI	GTCTC	2 cut(s)	217, 499
BstMBI	GATC	2 cut(s)	298, 655
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 176, 364, 389, 577, 586, 618
BstNI	CCWGG	2 cut(s)	126, 711
BstPAI	GACNNNNGTC	1 cut(s)	588
BstSCI	CCNGG	3 cut(s)	124, 625, 709
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	2 cut(s)	95, 167
BstV1I	GCAGC	3 cut(s)	87, 452, 455
BstX2I	RGATCY	2 cut(s)	298, 655
BstYI	RGATCY	2 cut(s)	298, 655
BtgI	CCRYGG	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	7 cut(s)	97, 205, 289, 360, 507, 573, 640
CfoI	GCGC	2 cut(s)	95, 167
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	558, 623
CpoI	CGGWCCG	1 cut(s)	623
CseI	GACGC	2 cut(s)	263, 578
Csp6I	GTAC	3 cut(s)	69, 239, 719
CspI	CGGWCCG	1 cut(s)	623
CviAII	CATG	6 cut(s)	87, 502, 541, 547, 562, 581
CviQI	GTAC	3 cut(s)	69, 239, 719
DdeI	CTNAG	4 cut(s)	293, 363, 475, 729
DpnI	GATC	2 cut(s)	300, 657
DpnII	GATC	2 cut(s)	298, 655
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	540, 554
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	558, 623
Eco53kI	GAGCTC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	124, 709
EcoT14I	CCWWGG	2 cut(s)	540, 554
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	540, 554
FaeI	CATG	6 cut(s)	90, 505, 544, 550, 565, 584
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	6 cut(s)	86, 501, 540, 546, 561, 580
FauI	CCCGC	2 cut(s)	296, 514
FauNDI	CATATG	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	8 cut(s)	76, 79, 168, 180, 248, 441, 444, 613
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	76, 79, 168, 180, 248, 441, 444, 613
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	94, 166
GluI	GCNGC	8 cut(s)	76, 79, 168, 180, 248, 441, 444, 613
HapII	CCGG	2 cut(s)	72, 626
HgaI	GACGC	2 cut(s)	263, 578
HhaI	GCGC	2 cut(s)	95, 167
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	90, 505, 544, 550, 565, 584
Hin6I	GCGC	2 cut(s)	93, 165
HinP1I	GCGC	2 cut(s)	93, 165
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	4, 152, 352
HpaII	CCGG	2 cut(s)	72, 626
HphI	GGTGA	9 cut(s)	38, 256, 361, 402, 584, 624, 699, 729, 743
Hpy166II	GTNNAC	4 cut(s)	187, 307, 632, 737
Hpy188I	TCNGA	5 cut(s)	157, 200, 478, 608, 730
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	4 cut(s)	187, 307, 632, 737
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	723
HpyCH4V	TGCA	8 cut(s)	99, 132, 140, 187, 358, 550, 565, 580
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 176, 364, 389, 577, 586, 618
HpyF3I	CTNAG	4 cut(s)	293, 363, 475, 729
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	90, 505, 544, 550, 565, 584
HspAI	GCGC	2 cut(s)	93, 165
KpnI	GGTACC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	298, 655
LmnI	GCTCC	4 cut(s)	45, 157, 200, 400
Lsp1109I	GCAGC	3 cut(s)	87, 452, 455
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	262, 272, 590
MalI	GATC	2 cut(s)	300, 657
MboI	GATC	2 cut(s)	298, 655
MboII	GAAGA	3 cut(s)	215, 218, 650
MflI	RGATCY	2 cut(s)	298, 655
MhlI	GDGCHC	3 cut(s)	189, 369, 728
MluCI	AATT	3 cut(s)	101, 464, 602
MmeI	TCCRAC	2 cut(s)	32, 361
MnlI	CCTC	9 cut(s)	35, 102, 105, 271, 429, 471, 508, 535, 602
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	78, 638
MspI	CCGG	2 cut(s)	72, 626
MspR9I	CCNGG	3 cut(s)	126, 627, 711
MvaI	CCWGG	2 cut(s)	126, 711
MvnI	CGCG	2 cut(s)	95, 167
MwoI	GCNNNNNNNGC	7 cut(s)	72, 176, 364, 389, 577, 586, 618
NciI	CCSGG	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	2 cut(s)	298, 655
NlaIII	CATG	6 cut(s)	90, 505, 544, 550, 565, 584
NlaIV	GGNNCC	2 cut(s)	70, 202
NmuCI	GTSAC	2 cut(s)	262, 590
NspV	TTCGAA	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	4, 152, 352
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	8 cut(s)	77, 80, 169, 181, 249, 442, 445, 614
PshAI	GACNNNNGTC	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	124, 709
PspGI	CCWGG	2 cut(s)	124, 709
PspN4I	GGNNCC	2 cut(s)	70, 202
PspPI	GGNCC	2 cut(s)	558, 623
PsuI	RGATCY	2 cut(s)	298, 655
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	3 cut(s)	70, 240, 720
RsaNI	GTAC	3 cut(s)	69, 239, 719
RseI	CAYNNNNRTG	1 cut(s)	545
Rsr2I	CGGWCCG	1 cut(s)	623
RsrII	CGGWCCG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	369
SatI	GCNGC	8 cut(s)	76, 79, 168, 180, 248, 441, 444, 613
Sau3AI	GATC	2 cut(s)	298, 655
Sau96I	GGNCC	2 cut(s)	558, 623
ScrFI	CCNGG	3 cut(s)	126, 627, 711
SduI	GDGCHC	3 cut(s)	189, 369, 728
SfuI	TTCGAA	1 cut(s)	534
SinI	GGWCC	2 cut(s)	558, 623
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	101, 464, 602
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	124, 625, 709
StyI	CCWWGG	2 cut(s)	540, 554
TaaI	ACNGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	252, 534
TasI	AATT	3 cut(s)	101, 464, 602
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	5 cut(s)	81, 170, 182, 250, 615
TfiI	GAWTC	3 cut(s)	4, 152, 352
TseFI	GTSAC	2 cut(s)	262, 590
TseI	GCWGC	3 cut(s)	75, 440, 443
Tsp45I	GTSAC	2 cut(s)	262, 590
TspDTI	ATGAA	4 cut(s)	17, 218, 501, 674
Van91I	CCANNNNNTGG	1 cut(s)	710
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	558, 623
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.