Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002150.1

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Forward (+)

20730 .. 21104

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002150.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgaatgcaacaacaaaccctactggtggttgctctggcggcggtggggggagcagtagtggagggagcgccggaggaggaaacgccggaccgtgtggcgcgtgtaagttcttgaggaggaagtgcgtggcgggatgcatatttgcaccctacttcgattcggagcaaggggcagctcactttgcggcggtgcacaaggtgttcggagccagcaatgtctccaagcttcttcatcatattccggctcacaagcggccagacgccgtcctcactgtttgttttgaggctcaagctaggctcaaagatccggtctacggctgtgttgctcacatctttgctcttcaacaacaggtgcacacatactatacatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

124

Amino Acids

12.8

Weight (kDa)

8.92

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	101
AciI	CCGC	6 cut(s)	39, 42, 131, 185, 188, 253
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	26, 314
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	3 cut(s)	176, 226, 293
AluI	AGCT	3 cut(s)	176, 226, 293
Alw21I	GWGCWC	2 cut(s)	195, 357
Alw26I	GTCTC	1 cut(s)	223
Alw44I	GTGCAC	2 cut(s)	191, 353
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	254
ApaLI	GTGCAC	2 cut(s)	191, 353
ApeKI	GCWGC	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	2 cut(s)	71, 101
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	2 cut(s)	195, 357
Bbv12I	GWGCWC	2 cut(s)	195, 357
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	248, 331
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	4 cut(s)	40, 174, 186, 254
BlsI	GCNGC	4 cut(s)	41, 175, 187, 255
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	208
BmsI	GCATC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	133, 273
BsaHI	GRCGYC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 314
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	26, 314
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	90, 130
BseSI	GKGCMC	2 cut(s)	195, 357
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	195, 357
BsiSI	CCGG	4 cut(s)	72, 87, 242, 308
BslI	CCNNNNNNNGG	2 cut(s)	26, 314
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	195, 357
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	6 cut(s)	39, 42, 131, 185, 188, 253
BspANI	GGCC	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	93, 274
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	71, 101
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 182
BstSLI	GKGCMC	2 cut(s)	195, 357
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	2 cut(s)	71, 101
Cfr13I	GGNCC	1 cut(s)	89
CpoI	CGGWCCG	1 cut(s)	89
CseI	GACGC	1 cut(s)	269
CspI	CGGWCCG	1 cut(s)	89
CviJI	RGCY	9 cut(s)	176, 209, 226, 245, 256, 287, 293, 298, 318
CviKI_1	RGCY	9 cut(s)	176, 209, 226, 245, 256, 287, 293, 298, 318
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	140
FaiI	YATR	5 cut(s)	140, 237, 361, 366, 370
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	40, 174, 186, 254
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	40, 174, 186, 254
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	70, 100
GluI	GCNGC	4 cut(s)	40, 174, 186, 254
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	4 cut(s)	72, 87, 242, 308
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	71, 101
Hin1I	GRCGYC	1 cut(s)	261
Hin6I	GCGC	2 cut(s)	69, 99
HinP1I	GCGC	2 cut(s)	69, 99
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	4 cut(s)	72, 87, 242, 308
Hpy166II	GTNNAC	3 cut(s)	193, 313, 355
Hpy188I	TCNGA	2 cut(s)	163, 206
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	193, 313, 355
HpyCH4III	ACNGT	2 cut(s)	93, 274
HpyCH4V	TGCA	5 cut(s)	8, 138, 146, 193, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 182
Hsp92I	GRCGYC	1 cut(s)	261
HspAI	GCGC	2 cut(s)	69, 99
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	4 cut(s)	51, 66, 163, 206
LpnPI	CCDG	9 cut(s)	9, 21, 85, 100, 223, 255, 270, 321, 335
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	294
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	221, 332
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	195, 357
MnlI	CCTC	7 cut(s)	56, 68, 71, 108, 111, 277, 278
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	1 cut(s)	373
MspI	CCGG	4 cut(s)	72, 87, 242, 308
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	39, 182
NdeII	GATC	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	41, 175, 187, 255
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	263
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	4 cut(s)	40, 174, 186, 254
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	195, 357
SetI	ASST	5 cut(s)	178, 201, 228, 295, 354
SfaNI	GCATC	1 cut(s)	125
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	112, 288
SmoI	CTYRAG	2 cut(s)	112, 288
SsiI	CCGC	6 cut(s)	39, 42, 131, 185, 188, 253
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	93, 274
TaqI	TCGA	1 cut(s)	156
TauI	GCSGC	3 cut(s)	42, 188, 256
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	17, 221
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	263
VneI	GTGCAC	2 cut(s)	191, 353
VpaK11BI	GGWCC	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.