Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Forward (+)

45876690 .. 45879532

Gene Structure 2843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAATGCGACAACAAACCCTACTGGTGGTTGCTCTGGCGGCGGTGGGGGGAGCAGTAGTGGAGGGAGCGCCGGAGGAGGAAACGCCGGACCGTGTGGGGCGTGTAAGTTCTTGAGGAGGAAGTGCGTGGCGGGATGCATATTTGCACCCTACTTCGATTCGGAGCAAGGGGCAGCTCACTTTGCGGCGGTGCACAAGGTGTTCGGAGCCAGCAATGTCTCCAAGCTTCTTCATCATATTCCGGCTCACAAGCGGCCAGACGCCGTCCTCACTGTTTGTTTTGAGGCTCAAGCTAGGCTCAAAGATCCGGTCTACGGCTGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTGGTGAATTTACAAGCCGAGATCTCATACTTGCAAGCCCACCTAGCAACAATGGAGCTTCCATCACCTCCTCCGCCCCCTCCGCCACTAATCGCTCAACCTCCACTCTCCATTGCAGACCTTCCTTCAGCCCCCATGCCCGCAACGTACGATTTGTCCTCGCTTTTCGAACCCATGGTGCAGCCAACTTCTTGGGTCATGCAACAGCGCGCGCTGCTGCACAACCAACATCATCAGTTCGCAAGCGGTTCTGGTGGTTCCTCATCGAGTGGCGGTGGTAGTGGCGATCTTCAAGCTTTGGCTCGTGAACTGCTCCACAGGCATACTGGTTCTCCGTCGGGGTCGGTGCCGTGCTCTGAGGCTTCACCATCTCAGTCCATGTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

246

Amino Acids

25.33

Weight (kDa)

7.68

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	31 - 129	1.2e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	697
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	2 cut(s)	561, 563
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	26, 314
AgsI	TTSAA	2 cut(s)	344, 644
AluBI	AGCT	5 cut(s)	176, 226, 293, 409, 647
AluI	AGCT	5 cut(s)	176, 226, 293, 409, 647
Alw21I	GWGCWC	2 cut(s)	195, 707
Alw26I	GTCTC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	254
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	173, 532, 565, 568
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	4 cut(s)	71, 561, 563, 565
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	367, 408, 708
AsuII	TTCGAA	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	697
BauI	CACGAG	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	195, 707
BbvI	GCAGC	4 cut(s)	185, 544, 552, 555
BccI	CCATC	2 cut(s)	421, 727
BceAI	ACGGC	3 cut(s)	248, 331, 685
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	294, 395
BfoI	RGCGCY	1 cut(s)	72
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	7 cut(s)	40, 174, 186, 254, 533, 566, 569
BlsI	GCNGC	7 cut(s)	41, 175, 187, 255, 534, 567, 570
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	208, 610, 699
BmsI	GCATC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	133, 273
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 667, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 314
Bse1I	ACTGG	2 cut(s)	28, 682
Bse3DI	GCAATG	2 cut(s)	220, 462
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	26, 314
BseMI	GCAATG	2 cut(s)	220, 462
BseMII	CTCAG	2 cut(s)	699, 737
BseNI	ACTGG	2 cut(s)	28, 682
BsePI	GCGCGC	2 cut(s)	559, 561
BseRI	GAGGAG	3 cut(s)	90, 130, 411
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	185, 544, 552, 555
BsgI	GTGCAG	2 cut(s)	551, 554
Bsh1236I	CGCG	2 cut(s)	561, 563
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	697
BsiHKAI	GWGCWC	2 cut(s)	195, 707
BsiSI	CCGG	4 cut(s)	72, 87, 242, 308
BsiWI	CGTACG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	26, 314
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	195, 707
Bsp143I	GATC	3 cut(s)	304, 372, 637
Bsp19I	CCATGG	1 cut(s)	525
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	700, 736
BspFNI	CGCG	2 cut(s)	561, 563
BspLI	GGNNCC	3 cut(s)	208, 610, 699
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	697
BsrDI	GCAATG	2 cut(s)	220, 462
BsrI	ACTGG	2 cut(s)	28, 682
BssECI	CCNNGG	1 cut(s)	525
BssHII	GCGCGC	2 cut(s)	559, 561
BssMI	GATC	3 cut(s)	304, 372, 637
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	654
Bst4CI	ACNGT	2 cut(s)	93, 274
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	6 cut(s)	211, 387, 492, 561, 563, 595
BstDEI	CTNAG	2 cut(s)	708, 723
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	2 cut(s)	561, 563
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	4 cut(s)	71, 561, 563, 565
BstKTI	GATC	3 cut(s)	307, 375, 640
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	304, 372, 637
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 182, 395, 433, 565, 670
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	2 cut(s)	561, 563
BstV1I	GCAGC	4 cut(s)	185, 544, 552, 555
BstX2I	RGATCY	2 cut(s)	304, 372
BstXI	CCANNNNNNTGG	1 cut(s)	543
BstYI	RGATCY	2 cut(s)	304, 372
BsuRI	GGCC	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	6 cut(s)	211, 387, 492, 561, 563, 595
CfoI	GCGC	4 cut(s)	71, 561, 563, 565
Cfr13I	GGNCC	1 cut(s)	89
CpoI	CGGWCCG	1 cut(s)	89
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	499
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	4 cut(s)	487, 526, 550, 730
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	708, 723
DpnI	GATC	3 cut(s)	306, 374, 639
DpnII	GATC	3 cut(s)	304, 372, 637
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	2 cut(s)	414, 423
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	4 cut(s)	490, 529, 553, 733
FaiI	YATR	8 cut(s)	140, 237, 379, 488, 527, 551, 675, 731
FatI	CATG	4 cut(s)	486, 525, 549, 729
FauI	CCCGC	2 cut(s)	124, 499
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	7 cut(s)	40, 174, 186, 254, 533, 566, 569
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	7 cut(s)	40, 174, 186, 254, 533, 566, 569
FspBI	CTAG	2 cut(s)	294, 395
GlaI	GCGC	4 cut(s)	70, 560, 562, 564
GluI	GCNGC	7 cut(s)	40, 174, 186, 254, 533, 566, 569
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	4 cut(s)	72, 87, 242, 308
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	4 cut(s)	71, 561, 563, 565
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	490, 529, 553, 733
Hin6I	GCGC	4 cut(s)	69, 559, 561, 563
HinP1I	GCGC	4 cut(s)	69, 559, 561, 563
HindIII	AAGCTT	2 cut(s)	224, 645
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	4 cut(s)	72, 87, 242, 308
HphI	GGTGA	3 cut(s)	367, 408, 708
Hpy166II	GTNNAC	3 cut(s)	193, 313, 659
Hpy188I	TCNGA	3 cut(s)	163, 206, 709
Hpy188III	TCNNGA	2 cut(s)	112, 656
Hpy8I	GTNNAC	3 cut(s)	193, 313, 659
Hpy99I	CGWCG	1 cut(s)	691
HpyAV	CCTTC	2 cut(s)	482, 486
HpyCH4III	ACNGT	2 cut(s)	93, 274
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	8 cut(s)	138, 146, 193, 385, 467, 532, 553, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 182, 395, 433, 565, 670
HpyF3I	CTNAG	2 cut(s)	708, 723
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	490, 529, 553, 733
HspAI	GCGC	4 cut(s)	69, 559, 561, 563
Kzo9I	GATC	3 cut(s)	304, 372, 637
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	6 cut(s)	51, 66, 163, 206, 406, 669
Lsp1109I	GCAGC	4 cut(s)	185, 544, 552, 555
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	294, 395
MaeII	ACGT	1 cut(s)	497
MalI	GATC	3 cut(s)	306, 374, 639
MboI	GATC	3 cut(s)	304, 372, 637
MboII	GAAGA	3 cut(s)	221, 332, 632
MflI	RGATCY	2 cut(s)	304, 372
MhlI	GDGCHC	2 cut(s)	195, 707
MluCI	AATT	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	140
MspI	CCGG	4 cut(s)	72, 87, 242, 308
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	2 cut(s)	561, 563
MwoI	GCNNNNNNNGC	6 cut(s)	39, 182, 395, 433, 565, 670
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	304, 372, 637
NlaIII	CATG	4 cut(s)	490, 529, 553, 733
NlaIV	GGNNCC	3 cut(s)	208, 610, 699
NmeAIII	GCCGAG	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	519
PauI	GCGCGC	2 cut(s)	559, 561
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	158
Pfl23II	CGTACG	1 cut(s)	498
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	7 cut(s)	41, 175, 187, 255, 534, 567, 570
PspLI	CGTACG	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	208, 610, 699
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	304, 372
PsyI	GACNNNGTC	1 cut(s)	263
PteI	GCGCGC	2 cut(s)	559, 561
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	345
SatI	GCNGC	7 cut(s)	40, 174, 186, 254, 533, 566, 569
Sau3AI	GATC	3 cut(s)	304, 372, 637
Sau96I	GGNCC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	195, 707
SfaNI	GCATC	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	112, 288
SmoI	CTYRAG	2 cut(s)	112, 288
Sse9I	AATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	294, 395
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	93, 274
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	3 cut(s)	156, 519, 617
TasI	AATT	1 cut(s)	358
TauI	GCSGC	3 cut(s)	42, 188, 256
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	4 cut(s)	173, 532, 565, 568
TspDTI	ATGAA	2 cut(s)	17, 221
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	294, 395
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.