Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Forward (+)

31390213 .. 31393714

Gene Structure 3502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAATGCTACAACAAACCCTACTGGTGGTTGCTCTGGCGGCGGTGGGGGGAGCAGTAGTGGAGGCAGCGCCGGAGGAGGAAACGCCGGACCGTGTGGCGCGTGTAAGTTCTTGAGGAGGAAGTGCGTGGCGGGATGCATATTTGCACCCTACTTCGATTCGGAGCAAGGGGCAGCTCACTTTGCGGCGGTGCACAAGGTGTTCGGAGCCAGCAATGTCTCCAAGCTTCTTCATCATATTCCGGCTCACAAGCGGCCAGATGCCGTCCTCACTGTTTGTTTTGAGGCTCAAGCTAGGCTCAAAGATCCGGTCTACGGCTGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTGGTGAATTTACAAGCCGAGATCTCATACTTGCAAGCCCACCTAGCAACAATGGAGCTTCCATCACCTCCTCCGCCCCCTCCGCCACTAATCGCTCAACCTCCATTCTCCATTTCAGACCTTCCTTCGGCCCCCATGCCCACAACGTATGATTTGTCCTCGCTTTTTGAACCCATGGTGCAGCCAACTGCTTGGGTCATGCAACAGCGCGCGCTGCTGCACAACCAACATCATCAGTTCGCAAGCGGTTCCGGTGGTTCCTCATCGAGTGGCGGTGGTGGCGGTGGTAGTGGCGATCTTCAAGCTTTGGCTCGTGAACTGCTCCACAGGCATACTGGTTCTCCGTCGGGGTCGGTGCCGTGCTCTGAGGCTTCACCATCTCAGTCTATGTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

249

Amino Acids

25.56

Weight (kDa)

7.68

Isoelectric Point (pI)

66.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	31 - 129	1.2e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	3 cut(s)	101, 561, 563
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	358
AdeI	CACNNNGTG	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	26, 314, 478
AgsI	TTSAA	3 cut(s)	344, 521, 653
AluBI	AGCT	5 cut(s)	176, 226, 293, 409, 656
AluI	AGCT	5 cut(s)	176, 226, 293, 409, 656
Alw21I	GWGCWC	2 cut(s)	195, 716
Alw26I	GTCTC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	254, 480
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	5 cut(s)	66, 173, 532, 565, 568
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	5 cut(s)	71, 101, 561, 563, 565
AspS9I	GGNCC	2 cut(s)	89, 481
AsuHPI	GGTGA	3 cut(s)	367, 408, 717
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	195, 716
BbvI	GCAGC	5 cut(s)	78, 185, 544, 552, 555
BccI	CCATC	2 cut(s)	421, 736
BceAI	ACGGC	3 cut(s)	248, 331, 694
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	294, 395
BfoI	RGCGCY	1 cut(s)	72
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	8 cut(s)	40, 67, 174, 186, 254, 533, 566, 569
BlsI	GCNGC	8 cut(s)	41, 68, 175, 187, 255, 534, 567, 570
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 481
BmiI	GGNNCC	5 cut(s)	208, 483, 601, 610, 708
BmsI	GCATC	2 cut(s)	125, 250
BpuEI	CTTGAG	2 cut(s)	133, 273
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	2 cut(s)	307, 602
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 676, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 314, 478
Bse1I	ACTGG	2 cut(s)	28, 691
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	26, 314, 478
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	708, 746
BseNI	ACTGG	2 cut(s)	28, 691
BsePI	GCGCGC	2 cut(s)	559, 561
BseRI	GAGGAG	3 cut(s)	90, 130, 411
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	5 cut(s)	78, 185, 544, 552, 555
BsgI	GTGCAG	2 cut(s)	551, 554
Bsh1236I	CGCG	3 cut(s)	101, 561, 563
BshFI	GGCC	2 cut(s)	256, 482
BshNI	GGYRCC	1 cut(s)	706
BsiHKAI	GWGCWC	2 cut(s)	195, 716
BsiSI	CCGG	5 cut(s)	72, 87, 242, 308, 603
BslI	CCNNNNNNNGG	3 cut(s)	26, 314, 478
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	256, 482
Bsp1286I	GDGCHC	2 cut(s)	195, 716
Bsp143I	GATC	3 cut(s)	304, 372, 646
Bsp19I	CCATGG	1 cut(s)	525
BspANI	GGCC	2 cut(s)	256, 482
BspCNI	CTCAG	2 cut(s)	709, 745
BspFNI	CGCG	3 cut(s)	101, 561, 563
BspLI	GGNNCC	5 cut(s)	208, 483, 601, 610, 708
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	28, 691
BssECI	CCNNGG	1 cut(s)	525
BssHII	GCGCGC	2 cut(s)	559, 561
BssMI	GATC	3 cut(s)	304, 372, 646
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	93, 274
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	5 cut(s)	211, 387, 561, 563, 595
BstDEI	CTNAG	2 cut(s)	717, 732
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	3 cut(s)	101, 561, 563
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	5 cut(s)	71, 101, 561, 563, 565
BstKTI	GATC	3 cut(s)	307, 375, 649
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	304, 372, 646
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 182, 395, 433, 565, 630, 679
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	3 cut(s)	101, 561, 563
BstV1I	GCAGC	5 cut(s)	78, 185, 544, 552, 555
BstX2I	RGATCY	2 cut(s)	304, 372
BstXI	CCANNNNNNTGG	1 cut(s)	543
BstYI	RGATCY	2 cut(s)	304, 372
BsuRI	GGCC	2 cut(s)	256, 482
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	5 cut(s)	211, 387, 561, 563, 595
CfoI	GCGC	5 cut(s)	71, 101, 561, 563, 565
Cfr13I	GGNCC	2 cut(s)	89, 481
CpoI	CGGWCCG	1 cut(s)	89
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	3 cut(s)	487, 526, 550
DdeI	CTNAG	2 cut(s)	717, 732
DpnI	GATC	3 cut(s)	306, 374, 648
DpnII	GATC	3 cut(s)	304, 372, 646
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	2 cut(s)	414, 423
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	3 cut(s)	490, 529, 553
FaiI	YATR	9 cut(s)	140, 237, 379, 488, 501, 527, 551, 684, 740
FatI	CATG	3 cut(s)	486, 525, 549
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	8 cut(s)	40, 67, 174, 186, 254, 533, 566, 569
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	8 cut(s)	40, 67, 174, 186, 254, 533, 566, 569
FspBI	CTAG	2 cut(s)	294, 395
GlaI	GCGC	5 cut(s)	70, 100, 560, 562, 564
GluI	GCNGC	8 cut(s)	40, 67, 174, 186, 254, 533, 566, 569
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	256, 482
HapII	CCGG	5 cut(s)	72, 87, 242, 308, 603
HhaI	GCGC	5 cut(s)	71, 101, 561, 563, 565
Hin1II	CATG	3 cut(s)	490, 529, 553
Hin6I	GCGC	5 cut(s)	69, 99, 559, 561, 563
HinP1I	GCGC	5 cut(s)	69, 99, 559, 561, 563
HindIII	AAGCTT	2 cut(s)	224, 654
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	5 cut(s)	72, 87, 242, 308, 603
HphI	GGTGA	3 cut(s)	367, 408, 717
Hpy166II	GTNNAC	3 cut(s)	193, 313, 668
Hpy188I	TCNGA	4 cut(s)	163, 206, 469, 718
Hpy188III	TCNNGA	2 cut(s)	112, 665
Hpy8I	GTNNAC	3 cut(s)	193, 313, 668
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	2 cut(s)	482, 486
HpyCH4III	ACNGT	2 cut(s)	93, 274
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	7 cut(s)	138, 146, 193, 385, 532, 553, 571
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 182, 395, 433, 565, 630, 679
HpyF3I	CTNAG	2 cut(s)	717, 732
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	3 cut(s)	490, 529, 553
HspAI	GCGC	5 cut(s)	69, 99, 559, 561, 563
Kzo9I	GATC	3 cut(s)	304, 372, 646
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	5 cut(s)	51, 163, 206, 406, 678
Lsp1109I	GCAGC	5 cut(s)	78, 185, 544, 552, 555
LweI	GCATC	2 cut(s)	125, 250
MaeI	CTAG	2 cut(s)	294, 395
MaeII	ACGT	1 cut(s)	497
MalI	GATC	3 cut(s)	306, 374, 648
MboI	GATC	3 cut(s)	304, 372, 646
MboII	GAAGA	3 cut(s)	221, 332, 641
MflI	RGATCY	2 cut(s)	304, 372
MhlI	GDGCHC	2 cut(s)	195, 716
MluCI	AATT	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	140
MspI	CCGG	5 cut(s)	72, 87, 242, 308, 603
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	3 cut(s)	101, 561, 563
MwoI	GCNNNNNNNGC	7 cut(s)	39, 182, 395, 433, 565, 630, 679
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	304, 372, 646
NlaIII	CATG	3 cut(s)	490, 529, 553
NlaIV	GGNNCC	5 cut(s)	208, 483, 601, 610, 708
NmeAIII	GCCGAG	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	140
PauI	GCGCGC	2 cut(s)	559, 561
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	8 cut(s)	41, 68, 175, 187, 255, 534, 567, 570
PspN4I	GGNNCC	5 cut(s)	208, 483, 601, 610, 708
PspPI	GGNCC	2 cut(s)	89, 481
PsuI	RGATCY	2 cut(s)	304, 372
PteI	GCGCGC	2 cut(s)	559, 561
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	345
SatI	GCNGC	8 cut(s)	40, 67, 174, 186, 254, 533, 566, 569
Sau3AI	GATC	3 cut(s)	304, 372, 646
Sau96I	GGNCC	2 cut(s)	89, 481
SduI	GDGCHC	2 cut(s)	195, 716
SfaNI	GCATC	2 cut(s)	125, 250
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	112, 288
SmoI	CTYRAG	2 cut(s)	112, 288
Sse9I	AATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	294, 395
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	93, 274
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	156, 617
TasI	AATT	1 cut(s)	358
TauI	GCSGC	3 cut(s)	42, 188, 256
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	5 cut(s)	66, 173, 532, 565, 568
TspDTI	ATGAA	2 cut(s)	17, 221
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	294, 395
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.