Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Forward (+)

10916529 .. 10920159

Gene Structure 3631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAATGCGACAACAAACCCTAGTGGTGGCTGTGGCGGTGGAGGAGGCAGCAGCAGTGGAGGCAGTGCCGGAGGAGGAGGAAACGCCGGACCTTGTGGGGCGTGTAAGTTCTTGAGGAGGAAGTGTGTTGCAGGATGCATATTTGCACCCTACTTCGATTCAGAGCAAGGAGCAGCTCACTTTGCAGCGGTGCACAAGGTGTTCGGAGCTAGCAATGTCTCCAAGCTTCTTCATCATATTCCGGCACACAAGCGCCCCGACGCCGTCCTCACTGTTTGCTTTGAGGCTCAAGCTAGGCTCAAAGATCCAGTCTACGGCTGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTGGTGAATCTACAAGCTGAGATCTCATACTTGCAAGCCCACCTAGCAACAATGGAGCTTCCATCACCTCCTCCGCCACCTCCACCGCTAATCGCGCAACCTCAACTCTCCATTGCAGACCTTCCTTCGGCCCCCATGCCCGCAACATACGACTTGTCATCGCTTTTCGAACCCATGGTGCAGCCAACTGCTTGGGTCATGCAACAACGTGCATTGCTGCACAACCAACATCATCAGTTCGTAGGCGGCTCATCGAGTGGAGGCGTTGGTGGTGGTGGCGATCTTCAAGCTTTGGCTCGTGAACTGCTCCACAGGCACACCGGTTCTCCGTCGGGGTCGGTGCCTTGCTCTGAGGCTTCACCATCTCGGTCTCTGTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

245

Amino Acids

25.15

Weight (kDa)

8.15

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	31 - 129	1.2e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	446
AciI	CCGC	6 cut(s)	36, 188, 425, 437, 492, 597
AclWI	GGATC	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	26, 314, 478
AgeI	ACCGGT	1 cut(s)	671
AgsI	TTSAA	2 cut(s)	344, 638
AluBI	AGCT	7 cut(s)	176, 209, 226, 293, 368, 409, 641
AluI	AGCT	7 cut(s)	176, 209, 226, 293, 368, 409, 641
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	223, 726
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	480
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	6 cut(s)	48, 51, 173, 185, 532, 568
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsiGI	ACCGGT	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	255, 448
AspS9I	GGNCC	2 cut(s)	89, 481
AsuHPI	GGTGA	3 cut(s)	367, 408, 702
AsuII	TTCGAA	1 cut(s)	519
AsuNHI	GCTAGC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	691
BauI	CACGAG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	6 cut(s)	60, 63, 185, 197, 544, 555
BccI	CCATC	2 cut(s)	421, 721
BceAI	ACGGC	2 cut(s)	248, 331
BcoDI	GTCTC	2 cut(s)	223, 726
BfaI	CTAG	4 cut(s)	21, 210, 294, 395
BfoI	RGCGCY	1 cut(s)	256
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	7 cut(s)	49, 52, 174, 186, 533, 569, 598
BlsI	GCNGC	7 cut(s)	50, 53, 175, 187, 534, 570, 599
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 481
BmiI	GGNNCC	2 cut(s)	483, 693
BmsI	GCATC	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	133, 273
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	671
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 661, 691
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 314, 478
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	3 cut(s)	220, 462, 563
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	26, 314, 478
BseMI	GCAATG	3 cut(s)	220, 462, 563
BseMII	CTCAG	2 cut(s)	360, 693
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	5 cut(s)	57, 87, 90, 130, 411
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	6 cut(s)	60, 63, 185, 197, 544, 555
BsgI	GTGCAG	2 cut(s)	551, 554
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	691
BshTI	ACCGGT	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	69, 87, 242, 672
BslI	CCNNNNNNNGG	3 cut(s)	26, 314, 478
BsmAI	GTCTC	2 cut(s)	223, 726
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	726
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	304, 372, 631
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	6 cut(s)	36, 188, 425, 437, 492, 597
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	361, 694
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	483, 693
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	726
BsrDI	GCAATG	3 cut(s)	220, 462, 563
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	3 cut(s)	304, 372, 631
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	648
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	211, 387, 492
BstDEI	CTNAG	2 cut(s)	369, 702
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	2 cut(s)	255, 448
BstKTI	GATC	3 cut(s)	307, 375, 634
BstMAI	GTCTC	2 cut(s)	223, 726
BstMBI	GATC	3 cut(s)	304, 372, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 182, 395, 445, 664
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	6 cut(s)	60, 63, 185, 197, 544, 555
BstX2I	RGATCY	2 cut(s)	304, 372
BstXI	CCANNNNNNTGG	1 cut(s)	543
BstYI	RGATCY	2 cut(s)	304, 372
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	2 cut(s)	61, 70
BtsIMutI	CAGTG	3 cut(s)	61, 70, 270
Cac8I	GCNNGC	3 cut(s)	211, 387, 492
CfoI	GCGC	2 cut(s)	255, 448
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	89, 481
CseI	GACGC	1 cut(s)	269
CspAI	ACCGGT	1 cut(s)	671
CviAII	CATG	3 cut(s)	487, 526, 550
DdeI	CTNAG	2 cut(s)	369, 702
DpnI	GATC	3 cut(s)	306, 374, 633
DpnII	GATC	3 cut(s)	304, 372, 631
DraIII	CACNNNGTG	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	3 cut(s)	490, 529, 553
FaiI	YATR	7 cut(s)	140, 237, 379, 488, 499, 527, 551
FatI	CATG	3 cut(s)	486, 525, 549
FauI	CCCGC	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	7 cut(s)	49, 52, 174, 186, 533, 569, 598
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	7 cut(s)	49, 52, 174, 186, 533, 569, 598
FspBI	CTAG	4 cut(s)	21, 210, 294, 395
GlaI	GCGC	2 cut(s)	254, 447
GluI	GCNGC	7 cut(s)	49, 52, 174, 186, 533, 569, 598
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	4 cut(s)	69, 87, 242, 672
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	255, 448
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	490, 529, 553
Hin6I	GCGC	2 cut(s)	253, 446
HinP1I	GCGC	2 cut(s)	253, 446
HindIII	AAGCTT	2 cut(s)	224, 639
HinfI	GANTC	2 cut(s)	158, 358
HpaII	CCGG	4 cut(s)	69, 87, 242, 672
HphI	GGTGA	3 cut(s)	367, 408, 702
Hpy166II	GTNNAC	3 cut(s)	193, 313, 653
Hpy188I	TCNGA	3 cut(s)	163, 206, 703
Hpy188III	TCNNGA	2 cut(s)	112, 650
Hpy8I	GTNNAC	3 cut(s)	193, 313, 653
Hpy99I	CGWCG	2 cut(s)	263, 685
HpyAV	CCTTC	2 cut(s)	482, 486
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 182, 395, 445, 664
HpyF3I	CTNAG	2 cut(s)	369, 702
HpySE526I	ACGT	1 cut(s)	559
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	490, 529, 553
HspAI	GCGC	2 cut(s)	253, 446
Kzo9I	GATC	3 cut(s)	304, 372, 631
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	4 cut(s)	170, 206, 406, 663
LpnPI	CCDG	8 cut(s)	82, 100, 117, 255, 321, 335, 649, 685
Lsp1109I	GCAGC	6 cut(s)	60, 63, 185, 197, 544, 555
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	4 cut(s)	21, 210, 294, 395
MaeII	ACGT	1 cut(s)	559
MalI	GATC	3 cut(s)	306, 374, 633
MboI	GATC	3 cut(s)	304, 372, 631
MboII	GAAGA	3 cut(s)	221, 332, 626
MflI	RGATCY	2 cut(s)	304, 372
MhlI	GDGCHC	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	4 cut(s)	69, 87, 242, 672
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	5 cut(s)	60, 182, 395, 445, 664
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	304, 372, 631
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	490, 529, 553
NlaIV	GGNNCC	2 cut(s)	483, 693
NsiI	ATGCAT	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	158, 358
PflFI	GACNNNGTC	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	671
PkrI	GCNGC	7 cut(s)	50, 53, 175, 187, 534, 570, 599
PspN4I	GGNNCC	2 cut(s)	483, 693
PspPI	GGNCC	2 cut(s)	89, 481
PsuI	RGATCY	2 cut(s)	304, 372
PsyI	GACNNNGTC	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	345
SatI	GCNGC	7 cut(s)	49, 52, 174, 186, 533, 569, 598
Sau3AI	GATC	3 cut(s)	304, 372, 631
Sau96I	GGNCC	2 cut(s)	89, 481
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	112, 288
SmoI	CTYRAG	2 cut(s)	112, 288
SsiI	CCGC	6 cut(s)	36, 188, 425, 437, 492, 597
SspMI	CTAG	4 cut(s)	21, 210, 294, 395
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	3 cut(s)	156, 519, 605
TaqII	GACCGA	1 cut(s)	708
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	2 cut(s)	158, 358
TscAI	CASTG	3 cut(s)	61, 70, 277
TseI	GCWGC	6 cut(s)	48, 51, 173, 185, 532, 568
TspDTI	ATGAA	2 cut(s)	17, 221
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	3 cut(s)	61, 70, 277
Tth111I	GACNNNGTC	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	4 cut(s)	21, 210, 294, 395
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.