Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Forward (+)

20297644 .. 20301214

Gene Structure 3571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G146600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAATGCAACAAACCCTAGTGGCTCCGGGGGAGGCGGCGGAGGAAGTAGTAGCAGCGGCGGAGGAGGAGGAGGAGGCCCATGTGGCGCGTGCAAGTTTTTGAGGAGGAAGTGCGTGCTGGGTTGCATATTTGCACCCTACTTCGACTCGGAGCAAGGCGCTGCTCATTTTGCTGCGGTGCACAAGGTCTTCGGAGCCAGCAATGTCTCCAAGCTTCTTCTTCACATCCCGGTCCACAAGCGCCTCGACGCTGTCGTCACCATATGCTACGAGGCTCAAGCCCGGCTTAGAGATCCGGTCTACGGCTGCGTTGCTCACATATTTGCTCTTCAACAACAGGTGGTGAGTCTACAGGCCGAGCTCTCATACTTACAAGCCCACTTAGCAACATTGGAGCTTCCATCGCCACCTCCACCCCCTCCTCCGCCATCAATCATAACTCCACCTCCACTCTCCATCTCAGACCTTCCATTGGCTGCCTCCTCCATGCCTGCCACATACGACTTGTCCTCACTTTTTGAACCCATGGTCATCCAACAACCTTGGGTCGTGCAACACCGGGCGCTGCATGATCCACGCCACCATCAGTTCGGAGGAGGCAGTAGCGGTTCGGGTTCATCATCAACTGGCGGCGGTGGTGGTGGCGGCGGCGATCTTCAATCTTTGGCTCGGGAACTCCTTCACAGGCATGGCCAATCTCTATCACCTGGGTCTTTGCCGTGCTCTGAGGCCTCACCATCTCAATCTCCCTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

253

Amino Acids

25.81

Weight (kDa)

7.7

Isoelectric Point (pI)

75.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccI	GTMKAC	2 cut(s)	300, 349
AccII	CGCG	1 cut(s)	89
AclWI	GGATC	2 cut(s)	287, 566
AcoI	YGGCCR	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	302, 472
AgsI	TTSAA	3 cut(s)	332, 521, 659
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	3 cut(s)	214, 361, 397
AluI	AGCT	3 cut(s)	214, 361, 397
Alw21I	GWGCWC	3 cut(s)	183, 363, 725
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	287, 566
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	4 cut(s)	76, 354, 691, 729
ApaLI	GTGCAC	1 cut(s)	179
ApeKI	GCWGC	6 cut(s)	54, 161, 173, 306, 476, 565
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	4 cut(s)	89, 161, 243, 565
AspS9I	GGNCC	2 cut(s)	77, 232
AsuC2I	CCSGG	4 cut(s)	28, 230, 283, 560
AsuHPI	GGTGA	4 cut(s)	250, 355, 696, 726
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	3 cut(s)	183, 363, 725
BbvI	GCAGC	6 cut(s)	66, 148, 160, 293, 463, 552
BccI	CCATC	5 cut(s)	409, 436, 464, 591, 745
BceAI	ACGGC	2 cut(s)	319, 703
BciT130I	CCWGG	1 cut(s)	708
BcnI	CCSGG	4 cut(s)	28, 230, 283, 560
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	350
BfoI	RGCGCY	3 cut(s)	162, 244, 566
BglI	GCCNNNNNGGC	1 cut(s)	84
Bme1390I	CCNGG	5 cut(s)	28, 230, 283, 560, 708
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	2 cut(s)	77, 232
BmiI	GGNNCC	2 cut(s)	25, 196
BmrFI	CCNGG	5 cut(s)	28, 230, 283, 560, 708
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	4 cut(s)	28, 230, 283, 560
BsaJI	CCNNGG	4 cut(s)	27, 525, 542, 707
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 472
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	4 cut(s)	27, 525, 542, 707
BseGI	GGATG	2 cut(s)	225, 531
BseLI	CCNNNNNNNGG	2 cut(s)	302, 472
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	474, 717
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	8 cut(s)	78, 81, 84, 87, 118, 411, 472, 609
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	6 cut(s)	66, 148, 160, 293, 463, 552
BseYI	CCCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	78, 356, 693, 731
BsiHKAI	GWGCWC	3 cut(s)	183, 363, 725
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	5 cut(s)	27, 230, 283, 296, 559
BslI	CCNNNNNNNGG	2 cut(s)	302, 472
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	78, 356, 693, 731
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	183, 363, 725
Bsp143I	GATC	3 cut(s)	292, 571, 652
Bsp19I	CCATGG	1 cut(s)	525
BspANI	GGCC	4 cut(s)	78, 356, 693, 731
BspCNI	CTCAG	2 cut(s)	473, 718
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	25, 196
BspPI	GGATC	2 cut(s)	287, 566
BspQI	GCTCTTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	4 cut(s)	27, 525, 542, 707
BssMI	GATC	3 cut(s)	292, 571, 652
BssT1I	CCWWGG	2 cut(s)	525, 542
Bst2UI	CCWGG	1 cut(s)	708
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	91, 116, 199, 492
BstDEI	CTNAG	4 cut(s)	287, 382, 460, 726
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	225, 531
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	3 cut(s)	162, 244, 566
BstHHI	GCGC	4 cut(s)	89, 161, 243, 565
BstKTI	GATC	3 cut(s)	295, 574, 655
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	292, 571, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 170, 383, 403
BstNI	CCWGG	1 cut(s)	708
BstSCI	CCNGG	5 cut(s)	26, 228, 281, 558, 706
BstSFI	CTRYAG	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	6 cut(s)	66, 148, 160, 293, 463, 552
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	4 cut(s)	78, 356, 693, 731
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	225, 531
Cac8I	GCNNGC	4 cut(s)	91, 116, 199, 492
CfoI	GCGC	4 cut(s)	89, 161, 243, 565
Cfr13I	GGNCC	2 cut(s)	77, 232
CseI	GACGC	1 cut(s)	257
CviAII	CATG	5 cut(s)	81, 487, 526, 569, 689
DdeI	CTNAG	4 cut(s)	287, 382, 460, 726
DpnI	GATC	3 cut(s)	294, 573, 654
DpnII	GATC	3 cut(s)	292, 571, 652
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	3 cut(s)	54, 75, 414
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	525, 542
Eco147I	AGGCCT	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	525, 542
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	525, 542
FaeI	CATG	5 cut(s)	84, 490, 529, 572, 692
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	5 cut(s)	80, 486, 525, 568, 688
FauNDI	CATATG	1 cut(s)	263
FblI	GTMKAC	2 cut(s)	300, 349
FokI	GGATG	2 cut(s)	212, 518
FriOI	GRGCYC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	4 cut(s)	88, 160, 242, 564
GsaI	CCCAGC	1 cut(s)	122
HaeII	RGCGCY	3 cut(s)	162, 244, 566
HaeIII	GGCC	4 cut(s)	78, 356, 693, 731
HapII	CCGG	5 cut(s)	27, 230, 283, 296, 559
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	4 cut(s)	89, 161, 243, 565
Hin1II	CATG	5 cut(s)	84, 490, 529, 572, 692
Hin6I	GCGC	4 cut(s)	87, 159, 241, 563
HinP1I	GCGC	4 cut(s)	87, 159, 241, 563
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	146, 346
HpaII	CCGG	5 cut(s)	27, 230, 283, 296, 559
HphI	GGTGA	4 cut(s)	250, 355, 696, 726
Hpy166II	GTNNAC	4 cut(s)	181, 235, 301, 350
Hpy188I	TCNGA	5 cut(s)	151, 194, 463, 593, 727
Hpy188III	TCNNGA	1 cut(s)	671
Hpy8I	GTNNAC	4 cut(s)	181, 235, 301, 350
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	476, 689
HpyCH4V	TGCA	7 cut(s)	8, 93, 126, 134, 181, 553, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 170, 383, 403
HpyF3I	CTNAG	4 cut(s)	287, 382, 460, 726
Hsp92II	CATG	5 cut(s)	84, 490, 529, 572, 692
HspAI	GCGC	4 cut(s)	87, 159, 241, 563
Kzo9I	GATC	3 cut(s)	292, 571, 652
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	4 cut(s)	29, 151, 194, 394
Lsp1109I	GCAGC	6 cut(s)	66, 148, 160, 293, 463, 552
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	294, 573, 654
MboI	GATC	3 cut(s)	292, 571, 652
MboII	GAAGA	5 cut(s)	181, 209, 212, 320, 647
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	183, 363, 725
MlsI	TGGCCA	1 cut(s)	693
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	2 cut(s)	140, 355
MmeI	TCCRAC	1 cut(s)	559
Mox20I	TGGCCA	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	693
MslI	CAYNNNNRTG	1 cut(s)	687
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	5 cut(s)	27, 230, 283, 296, 559
MspR9I	CCNGG	5 cut(s)	28, 230, 283, 560, 708
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	84, 170, 383, 403
NciI	CCSGG	4 cut(s)	28, 230, 283, 560
NcoI	CCATGG	1 cut(s)	525
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	3 cut(s)	292, 571, 652
NlaIII	CATG	5 cut(s)	84, 490, 529, 572, 692
NlaIV	GGNNCC	2 cut(s)	25, 196
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	731
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	678
PflFI	GACNNNGTC	1 cut(s)	251
PleI	GAGTC	2 cut(s)	140, 354
PpsI	GAGTC	2 cut(s)	140, 354
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	2 cut(s)	25, 196
PspPI	GGNCC	2 cut(s)	77, 232
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	292, 571, 652
Sau96I	GGNCC	2 cut(s)	77, 232
SchI	GAGTC	2 cut(s)	140, 355
ScrFI	CCNGG	5 cut(s)	28, 230, 283, 560, 708
SduI	GDGCHC	3 cut(s)	183, 363, 725
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SseBI	AGGCCT	1 cut(s)	731
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	5 cut(s)	26, 228, 281, 558, 706
StyI	CCWWGG	2 cut(s)	525, 542
TaqI	TCGA	2 cut(s)	144, 246
TauI	GCSGC	5 cut(s)	39, 60, 633, 648, 651
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	6 cut(s)	54, 161, 173, 306, 476, 565
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 606
Tth111I	GACNNNGTC	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	232
XmiI	GTMKAC	2 cut(s)	300, 349
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.