Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002150.1

Orthogroup ID

OG0014318

Physical Location & Seq

Genomic Coordinates Forward (+)

23106 .. 23453

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002150.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggagcttccatcacctcctccgccccctccgccactaatcgctcaacctccgctctccattgcagaccttccttcagcccccatgcccgcaacgtacgatttgtcctcgcttttcgaacccatggtgcagccaactgcttgggtcatgcaacagcgcgcgctgctgcacaaccaacatcatcagttcgcaagcggttctggtggttcctcatcgagtggcggtggtggcggtggtagtggcgatcttcaagctttggctcgtgaactgctccacaggcatactggttctccgtcggggtcggtgccgtgctctgaggcttcaccatctcagtctatgtccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

115

Amino Acids

11.77

Weight (kDa)

5.85

Isoelectric Point (pI)

84.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45420 AT4G00220
fragaria_vesca	FvH4_7g11990
malus_domestica	MD02G1202500.v1.1
prunus_persica	Prupe.2G146600_v2.0.a1
pyrus_communis	pycom02g16570
rosa_chinensis	RchiOBHm_Chr1g0350711
rosa_laevigata	RLG00000028461
rosa_multiflora	Rmu_sc0002150.1_g000005 Rmu_sc0002150.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304580
rosa_rugosa	Rorug01G0213300
rosa_samantha	Rh1AG227600 Rh1BG197100 Rh1CG212500 Rh1DG225000
rosa_wichuraiana	Rw1G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	2 cut(s)	159, 161
AciI	CCGC	7 cut(s)	23, 32, 53, 90, 195, 222, 231
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	2 cut(s)	7, 254
AluI	AGCT	2 cut(s)	7, 254
Alw21I	GWGCWC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	130, 163, 166
AspLEI	GCGC	3 cut(s)	159, 161, 163
AsuHPI	GGTGA	2 cut(s)	6, 315
AsuII	TTCGAA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	142, 150, 153
BccI	CCATC	2 cut(s)	19, 334
BceAI	ACGGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	131, 164, 167
BlsI	GCNGC	3 cut(s)	132, 165, 168
BmiI	GGNNCC	2 cut(s)	208, 306
Bpu14I	TTCGAA	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	306, 344
BseNI	ACTGG	1 cut(s)	289
BsePI	GCGCGC	2 cut(s)	157, 159
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	142, 150, 153
BsgI	GTGCAG	2 cut(s)	149, 152
Bsh1236I	CGCG	2 cut(s)	159, 161
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	314
BsiWI	CGTACG	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	7 cut(s)	23, 32, 53, 90, 195, 222, 231
BspCNI	CTCAG	2 cut(s)	307, 343
BspFNI	CGCG	2 cut(s)	159, 161
BspLI	GGNNCC	2 cut(s)	208, 306
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	123
BssHII	GCGCGC	2 cut(s)	157, 159
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	90, 159, 161, 193
BstDEI	CTNAG	2 cut(s)	315, 330
BstDSI	CCRYGG	1 cut(s)	123
BstFNI	CGCG	2 cut(s)	159, 161
BstHHI	GCGC	3 cut(s)	159, 161, 163
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 163, 228, 277
BstUI	CGCG	2 cut(s)	159, 161
BstV1I	GCAGC	3 cut(s)	142, 150, 153
BstXI	CCANNNNNNTGG	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	123
Cac8I	GCNNGC	4 cut(s)	90, 159, 161, 193
CfoI	GCGC	3 cut(s)	159, 161, 163
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	85, 124, 148
CviJI	RGCY	6 cut(s)	7, 80, 133, 254, 260, 320
CviKI_1	RGCY	6 cut(s)	7, 80, 133, 254, 260, 320
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	315, 330
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EciI	GGCGGA	2 cut(s)	12, 21
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	88, 127, 151
FaiI	YATR	5 cut(s)	86, 125, 149, 282, 338
FatI	CATG	3 cut(s)	84, 123, 147
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	131, 164, 167
Fsp4HI	GCNGC	3 cut(s)	131, 164, 167
GlaI	GCGC	3 cut(s)	158, 160, 162
GluI	GCNGC	3 cut(s)	131, 164, 167
HhaI	GCGC	3 cut(s)	159, 161, 163
Hin1II	CATG	3 cut(s)	88, 127, 151
Hin6I	GCGC	3 cut(s)	157, 159, 161
HinP1I	GCGC	3 cut(s)	157, 159, 161
HindIII	AAGCTT	1 cut(s)	252
HphI	GGTGA	2 cut(s)	6, 315
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	266
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	80, 84
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	65, 130, 151, 169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 163, 228, 277
HpyF3I	CTNAG	2 cut(s)	315, 330
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	88, 127, 151
HspAI	GCGC	3 cut(s)	157, 159, 161
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	4, 276
LpnPI	CCDG	3 cut(s)	186, 262, 270
Lsp1109I	GCAGC	3 cut(s)	142, 150, 153
MaeII	ACGT	1 cut(s)	95
MalI	GATC	1 cut(s)	246
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	314
MnlI	CCTC	7 cut(s)	27, 30, 39, 60, 118, 220, 310
MvnI	CGCG	2 cut(s)	159, 161
MwoI	GCNNNNNNNGC	4 cut(s)	31, 163, 228, 277
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	88, 127, 151
NlaIV	GGNNCC	2 cut(s)	208, 306
NspV	TTCGAA	1 cut(s)	117
PauI	GCGCGC	2 cut(s)	157, 159
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	132, 165, 168
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	208, 306
PteI	GCGCGC	2 cut(s)	157, 159
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SatI	GCNGC	3 cut(s)	131, 164, 167
Sau3AI	GATC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	6 cut(s)	9, 19, 52, 72, 98, 256
SfuI	TTCGAA	1 cut(s)	117
SsiI	CCGC	7 cut(s)	23, 32, 53, 90, 195, 222, 231
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	117, 215
TseI	GCWGC	3 cut(s)	130, 163, 166
TspGWI	ACGGA	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.