AT2G45540

WD-40 repeat family protein beige-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008085
Physical Location & Seq
Reverse (-)
18757489 .. 18772906
15418 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45540.4

Sequence Viewer

Length: 8841 bp
ATGGAAGACGATGATGAAAGAAAGCTCCCTGAAGCTGATATAGCTAATCCTTTGCACAATAGGATAGAGGCATTTGATACGACTTTGCAAGGGATCAGTTCAGCTGATAGAGCCTTTAAGGATGATGATTTTGAACAAGTTTCTCTGGGAGATCAGGAAAAGGCTGCGAATGAATCTCAGGGTGACCTTCAGGAACCTGGAAGCTTTTCAAATTCTGATCATGGGAGGTCTTCATTTGGTGGCACTGAAGTAGTTACTTATCAATTATCCGGGACTCAGGAGATGTATGATCTCATGCCTATGGACGATGTGCAAAGTGACCGACTTTCTAGCCCTGGACCTGAGAGAGAGGCAGCTTATTCCATGCAGCAGTCCCTTTCTGAAACTAGTCTGGATTCTGTCCACCATCCAGAATCTGGATATTCCCCTGTTCATTCCCCGCAGAAGCCCAAGCCAAAGGCCACTGTTCCAAATGTTTCTCCAGAGCTACTGCATCTTGTGGATTCAGCCATCATGGGGAAGCCTGAAAGCTTAGACAAACTAAAGAATGTTGTATGTGGTATTGAGAATTTTGGCTGTGGAGAGGAGTCAGAGGCCACTGCTTTCCTTGTTGTTGATTCACTTATTGCCACCATGGGTGGAGTTGAGAGTTTTGAAGAGGATGAAGATAGCAACCCTCCTAGTGTCATGTTAAATTCCCGTGCTGCTATTGTTTCTGGGGAGCTTATTCCTTGGCTTCCTGGTTTAGGTGATAACGTAAATTTTATGTCCCCCAGGACTCGCATGGTTCGGGGTTTGCTTGTTATTTTACGGTCATGCACGAGAAATAGAGCTATGTGTTCCACGGCAGGGTTATTAGGAGTTTTGTTGCGATCAGTGGAAGCGATAATTTCCAAGGACGTTGATATGAAATGGAATGCTGCTGCTATTTTGCTACTATGTATTCAACATTTAGCCGGGCACTCCCTTAGTGTCGATGATTTACACAGGTGGCTTCAAGTTATAAAAGCCGCAATTACAACAGCCTGGTCAAGTCCGTTGATGCTTGCTTTGGAGAAGGCAATGAGTGGAAAGGAATCAAGGGGGCCTGCTTGTACTTTTGAATTTGATGGTGAAAGCTCTGGGTTACTTGGTCCCGGAGAAAGTCGTTGGCCCTTTACCAATGGCTACGCATTTGCAACATGGATCTATATTGAATCATTTGCTGACACATTAAATGCTGCAACTGCGGCAGCTGCAATTGCTGCTGCCGCAGCAGCCAAGTCAGGGAAAACATCCGCAATGTCAGCTGCAGCGGCTGCGAGTGCGCTTGCTGGTGAAGGCACTGCTCATATGCCACGTTTGTTCAGCTTTTTGTCCGCTGATAATCAGGGAATAGAAGCATATTTCCACGCTCAATTTCTGGTGGTTGAGAGTGGTAGTGGGAAAGGAAGAAAGTCTTCGCTGCATTTTACTCATGCATTTAAGCCTCAATGTTGGTATTTTATTGGTCTTGAGCATAGCTGCAAGCAAGGACTTCTGGGGAAAGCAGAGAGTGAACTACGATTATATATTGATGGATCCTTGTATGAAAGTCGTCCTTTTGATTTTCCTCGTATATCCAAGCCCCTTTCTTTCTGTTGCATTGGCACAAATCCTCCTCCTACTATGGCTGGTCTACAACGTCGCCGTCGTCAATGTCCTTTGTTTGCAGAGATGGGACCAGTTTATATATTTAAGGAACCGATTGGTCCTGAGAGAATGGCGCGTTTGGCGTCTAGAGGTGGAGATGTTTTGCCTTGTTTTGGCAATGGGGCAGGCCTTCCTTGGCTAGCTACAAATGACTATGTACGTAATAAGGCAGAAGAAAGTAGTATTTTGGATGCAGATATTGGAGGATATACCCACCTGCTTTACCACCCTTGTCTGCTAAGTGGGAGATTTTGTCCAGATGCTTCACTTTCTGGAGCAGCAGGCACTCTAAGGCGACCAGCTGAGGTCCTTGGACAAGTCCATGTTGCAACGAGAATGAAGCCAGTGGAGTCTTTCTGGGCCTTAGCTTATGGAGGACCCATGTCCCTGCTTCCTTTGACCGTAAGCAGTGTGCATAAAGATAGCTTGGAGCCATGTCTTGGAAATCTTCCACTGTCTTTGTCCACAGTTACACTTGCTGCACCTGTATTTAGAATTATGTCAGTCGCTATTCAACATCCTGGGAACAATGAAGAGTTGTGTCGTACTCAGGGACCCGAGATTCTTGCTAGAATTCTGAGTTATCTTCTACACTCACTTGCATCCCTTGACAGGAAGCATGATGGAGTAGGAGAAGAGGAGCTAGTTGCTGCCATTGTTTCGCTTTGCCAATCTCAGAAGATCAATCATGTTCTCAAAGTGCAGCTCTTTCGTACGCTTTTATTAGATTTGAAAATATGGAGCCTGTGCAATTATGGACTCCAAAAGAAGCTATTGTCATCCCTTCAAGATATGGTTTTCACTGAAGCAACAGCTATGAGGGATGCCGAAGCTATTCAGTTGCTTCTAGATGGCTGTCGAAGATGCTATTGGATGATTTCTGAGAAGGATTCTGAGACCACTTTTCCTCTTGATGGGAATACGCGTCAAATGGGGGAACTCAATGCTCTGATTGATGAACTTCTGGTGATTATTGAACTTCTAATGGGAGCAGCATCTCCTTCTTTAGCTGCTGATGACCTCCGTCGATTACTTGGTTTCATAATTGACAGCCCACAGCCAAATCAGGTTGCGAGGGTATTACACCTTATGTATAGGTTGGTTGTACAGCCGAATGCTGCAAGAGCTCAGATGTTTGCAGAGGTATTTATAACGTCTGGTGGTATAGAAACACTTCTTGTTCTGCTGCAGAGAGAAGCTAAAACTGGTGAGGATAATGTTTTAGCTATGGGTAGGAGTGGAAAAAGGTCATCGACTGATCCAAGTGAAAAGAGTCCGTACAACGAGTCTGGTTCGGTAAAACAGTTGGATTCCAATCCACACGATAATGAGATTGGCTTTGACCTTCCTGGTCCTGATGGAAATTCTGTTGAGGATGATAATGTTGGGTCTCTGAATGTACCAGAGTCAGTTCGACAAGAAAAGGAGCATGGTTCCACACCTGTCGTTTGTGATAGTGACTCAGTTTCCATCTCCAATTCCATAAATACTGAGAGACTATCAGCTGAAATTGGTGGTATAAGTCTTTCAATAAGTGCTGATAGTGCAAGAAATAACGTGTACAATGTTGACAATAGCGATGCTGTTGTGGTTGGGATCATCAGATTGATTGGTGCTTTAATTTCTAGTGGGCACCTAACATTTGATTTCGATGCCCGTTCTGATGTGACAAGTAACATCCTGGGTAGTGGGCTCCATGAAAATGGTGGAACAATGTTTGATGATAAAGTCGCATTGCTTCTATTTGCTTTGCTGAAGGCATTTCAAGCTGCTCCAAACAGGCTGATGACTGACAACGTCTATACAACTTTGCTTGGGGCCTCGATCAATGCTTCGTCAACAGAAGATGGCCTTAACTTTTACGATTCAGGTCATCGCTTTGAACATTCCCAACTTTTGTTAGTCCTCCTGCGGTCTCTACCATCTGCATCTAAGGCTCTACAAAGCCGAGCACTTCAGGATCTTCTTTTTTTGGCTTGCAGTCATCCGGAAAATAGAAGCAGTCTGACAACAATGGAAGAGTGGCCTGAGTGGATCTTGGAGATACTGATCTCGAACTATGAGAAGGATGCAGGGAAGCAGTCTGCTTCAGTGGGTTCTTGTGAGGTAGAAGATATGATTCACAACTTCTTGATCATAATGTTGGAACATTCAATGCGCCAGAAAGATGGTTGGAAGGATATCGAGGCTACAATTCATTGTGCAGAGTGGCTTTCTATCGTTGGTGGTTCCAGCACTGGAGAGCAAAGAATTAGGCGTGAGGAGTCACTACCAATTTTTAAAAGACGACTTTTTGGTGGATTGCTAGACTTTGCTGCCAGAGAACTGCAAGCTCAGACTCAAGTTATTGCTGCAGCAGCTGCTGGTGTTGCTGCAGAGGGTCTAGCACCAAAGGATGCAAAAGCAGGAGCAGAAAATGCTGCTCAGCTTTCTGTTTTTCTGGTGGAAAATGCAATCGTGATTTTGATGCTTGTCGAAGATCATTTGCGGTCACAAAGCAAACAGACTTGTGCAACCAATGCAGTTGCTTCTCCATCCCCTCTTAAAAAACGTACAAGCACACTGACAGCGATCGGAGAATCATCAGAGATTTCTAGCAGCCGTGCTTCACTGTCAAGTGATTCAGGGAAAGTCCCTTTAGATATACTCGCATCAATGGCTGATTCAAGTGGACAGATTTCTGCAGTCGCAATGGAGCGCCTTACTGCTGCTTCTGCAGCTGAGCCTTATGAATCTGTTTCATGTGCTTTTGTTTCATATGGCAGCTGTGCCATGGATTTGGCTGAGGGTTGGAAGTACAGGAGTCGATTGTGGTATGGTGTTGGCCTTCCCTCTAAACCCAGTTCACTTGGTGGTGGTGGCAGTGGTTCAGACTCCTGGAAATCTACTTTAGAAAAAGATGCTCATGGAAACTGGATTGAACTTCCATTGGTTAAAAAATCTGTATCCATGCTTCAAGCTTTGCTATTAGATGAGTCTGGACTCGGAGGTGGCCTTGGAATAGGTGGAGGATCTGGTACGGGGATGGGAGGGATGACAGCCCTCTACCAGTTGCTGGACAGTGATCAGCCTTTCTTATGTATGCTGCGGATGGTGCTTCTGTCTATGAGGGAGGAAGACTATGGCGAAGATAATATGTTGATGAGAAATCTAAGTTCTGAACGCTCCTCAGGGAATTCAGTTACATTAGATAGTGGTTCTCAGATGTCTATGCGACAATCCCGATCAGCTTTATTGTGGAGTGTGCTATCTCCTATCATAAACATGCCAATATCCGATTCAAAGAGGCAGAGAGTACTGGTTACTGCATGTGTTCTCTATTCTGAGGTATGGCATGCTATCAGCAGAGACAGAAGACCACTTCGTAAGCAGTATATAGAGGCTATTGTACCACCATTTATTGCAGTCCTCCGGAGATGGCGACCACTTTTGGCGGGCATTCATGAACTTGCCACTGCTGATGGTATGAATCCCCTTGTCGTTGATGATCGTGCCTTGGCTGCTGATGCGCTCCCCGTTGAGGGTGCTCTTTCTATGGTTACTCCGGAGTGGGCTGCTGCTTTTGCTTCACCGCCTGCTGCAATGTCTCTGGCAATGATAGCTGCAGGGGCAGCTGGTTGGGAAGCACCACCACCTCCTACACCTTCACATCTTAGGCGAGACTCTTCAATGCTTGAGCGTAAGACTGCGAAACTTCAGACCTTTTCAAGCTTCCAGAAACCACTGGAGCCTCCAAACAACAATGCACCACCTCGACCAAGAGACAAAGCTGCTGCAAAGGCGGCAGCTTTGGCAGCCGCACGAGATCTTGAACGGAATGCAAAGATTGGTTCAGGAAGAGGTCTGAGCGCTGTTGCAATGGCAACATCTGCACAGCGGAGGAATATCGGTGACATGGAGCGTTTACAGAGATGGAACACTTCTGAAGCTATGGGAGTGGCGTGGATGGAATGTCTCCAACCAGTGGATACAAAATCAGTTTATGGAAAAGATTTTAATGCTTTGTCCTACAAATTTATTGCTGTACTTGTTGCGAGTTTTGCATTAGCACGTAACATGCAAAGATCAGAGATTGATAGGCGTATGCAAGATGATATCATAGCGGCAAACCGTCTATGCTTGGGAAGCCGTGCTTGGCGAAAACTAATTCGTTACTTGGCAGAGATGCGATGCTTTTTTGGGCCTTTTGGAGATGGAATATGCAGTCCTGAACGCGTTTTCTGGAAACTTGATTCTATGGAAAGCTTTTCGAGGATGAGACAGTCTATAAGGAGGAATTATTCTGGGACTGATCATCACGGGGCAGCAGCAGATTATGACGATCAGACAGAAACAAAAAGTGATAATGGTAGCAAGGGTTCTCAATCAAATCCTCCTGTTGTTGCTGCTGAAGTAATATTAATGGAAATAGCGTATGAAGAGGATGAACATGGAGAGGGTGATCAGCTTGATGTCAAAGGTAATGCTGAAGAACATAAAAGGGATGAAGGGAGAATATCTGGGTCACATGAGCATGCATCCAGAACTTCAGCAGGAAACAGTGATCCTCGAACATCAAATGACCTTGAAATGGTCCGAGATTCTTCAGTAGTAGCACCTGGCTTTGTTCCCAGTGAACTTGATGAAAGGATCCTTCTTGAACTTCCAACATCTATGGTCCGGCCACTAAGGGTTGTGAAAGGAACCTTTCAAATTACAACAAGGAGAATAAATTTTATTGTTGACAACAGAGAAAGCCAGAATTTGGCTGATCACTCAGATGAGTCCCAATCAGGTGATCAAGAAAAGGATCGTAGTTGGCCAATGTCTTCTCTTCATCAGATTTATAGCCGGAGATATCTCCTGAGAAGGAGTGCCCTGGAACTTTTTATGGTTGACCGTTCAAACTTCTTCTTTGATTTTGGGAATACTGAGGGAAGAAGAAATGCATATCGAGCTATCGTGCAAGCAAGGCCTCCTCACTTAAACAATATTTACCTAGCAACTCAGAGGCCGGAACAGCTTTTGAGAAGAACTCAGTTAATGGAGCGCTGGGCTAGATGGGAGATCAGCAATTTTGAATACTTAATGCAGCTTAACACGTTGGCTGGCCGTAGTTACAATGACATTACTCAGTATCCTGTTTTCCCGTGGATTATTTCTGACAACAGTTCAGAAAGTCTGGACCTTTCAAATCCATCTACCTTCAGAGATCTTTCCAAGCCAATTGGTGCATTGAACCCAGAGCGGCTCAAAAAATTTCAAGAGCGGTATTCTAGCTTCGAAGATCCAGTTATTCCCAAATTCCACTATGGCTCACATTACTCGAGTGCTGGAGCAGTGTTGTATTATCTTGCCAGAGTTGAACCTTTCACAACCCTATCAATTCAACTTCAAGGTGGAAAGTTTGATCATGCAGACCGCATGTTTTCAGACTTTCCAGGCACTTGGAATGGAGTTCTTGAAGACATGAGTGATGTGAAAGAATTGGTTCCAGAGTTGTTTTACCTCCCTGAGGTGCTGACCAACGAAAATTCGATTGACTTTGGTACAACACAGTTGGGAGAAAAGCTTGATGCTGTAAAACTTCCTCCTTGGGCCAAAAACCCAGTGGATTTTGTACACAAGCAACGAAGGGCTCTTGAGAGCGAGCATGTATCTGCTCATTTGCATGAATGGATTGATCTCATATTTGGGTATAAGCAACGTGGCAAAGAAGCTATAATGGCAAATAACGTTTTCTTCTACATTACCTACGAGGGGACTGTTGATATTGATAAGATCACGGACCCGGTACAACAACGTGCCACACAAGACCAGATAGCTTATTTTGGGCAAACACCATCCCAGCTGTTGACAGTTCCTCACATGAAGAGGATGCCGTTGAAAGATGTCCTACATATGCAGACTATTTTTCGAAATCCAAAAGAAATAAAACCATATACTGTTCAAACCCCAGAGCGCTGCAACTTACCAGCCTCAGCCATTCAGGCATCTTCAGATAGTGTTGTGATTGTGGACATGAATGTGCCAGCAGCTCGTGTTGCACAGCACAAGTGGCAACCAAACACTCCTGATGGCCAAGGTACTCCTTTCCTCTTCCATCACGGGAAGGCAACAACAACTTCAACTAGTGGATCATTGATGCGCATGTTCAAGGGTCCAGCTAGTTCTGGAACTGGTGACTGGCAATTTCCTCAGGCACAAGCATTTGCCTCATCAGGAATCAGAAGTTCGTCCGTGATTGCTATTACTAGCGATGGGGAAATAATCACAGGTGGACATGCGGATAATAGTATCAAGCTAGTCTCATCTGATGGGGCAAAAACTCTGGAAACAGCTTTTGGGCACTGTGCCCCTGTTACATGTCTGGCTCTTTCTCCAGACAACAACTTCCTTGTGACGGGTTCACGGGACAGTACTGTTTTGCTATGGAGAATTCACAAGGCGTTTACTTCTCGAACAAGCGTGTCTGAGCCATCAACTGGCTCTGGAGCGCCTTCCTCCACAAGCAACACGAATCTGGCCAATACGTTGGCAAACAAAGGCAAAAAATGTCGCCTTGAAGGGCCTATACAAGTGCTCCGAGGCCATCGAAGAGAATTAGTTTGTTGTTGTGTCAGCTCAGACCAAGGAGTCGTTGTTTCGTCTTCTGAGTCCTCAGATGTTCTATTGCATTCCATTAGAAAAGGACGGCTGATCAGACGATTAGTTGGTGTGAAGGCAGATTCTCTCTGCATTTCATCGGATGGGGTTATAATGGCGTGGAGTAGTTCAGAAGGTTCTATTAGCGTGTTCACCATTAACGGTGTTCTGATTGCCAAAGCAAAATTTCCCCTCTTTTGTAGCGTTGGTTGCATGGAAATATCCATGGATGGTCAAAATGCCTTGATAGGGATGAACTCATGTTCCAACTCGGATTATTCGAGTAGTAATGATACATCGAAAGATAGCAAAGAAATTGAAAGACTGGATGTTCCATCTCCTTCAATTTGCTTCCTCAACTTATACACACTACAGGTATTCCATGTGCTAAAGCTTGGTCAAGGCCAGGATATAACCGCACTGGCTCTGAACGTTGACAACACGAACCTCTTAGTTTCCACAGAAGATAAACAATTGATAATCTTCACTGATCCGGCTTTAAGCTTAAAGGTGGTGGATCAGATGCTGAAGCTCGGGTGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

2946

Amino Acids

321.93

Weight (kDa)

5.56

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 653 - 958 8.9e-52 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1152 - 1291 3.2e-10 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4800 PF16057 1864 - 1997 4.7e-06 Domain of unknown function (DUF4800)
PH_BEACH PF14844 2108 - 2205 1.3e-29 PH domain associated with Beige/BEACH
Beach PF02138 2233 - 2509 7.8e-120 Beige/BEACH domain
Beta-prop_TEP1_2nd PF25047 2595 - 2700 3.3e-06 TEP-1 second beta-propeller
WD40_Prp19 PF24814 2625 - 2819 2.4e-10 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 2628 - 2819 8.3e-14 WDR5 beta-propeller domain
NBCH_WD40 PF20426 2630 - 2844 2.8e-21 Neurobeachin beta propeller domain
Beta-prop_WDR3_1st PF25173 2630 - 2698 8.4e-08 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 2631 - 2705 9.3e-09 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 2632 - 2705 3.5e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2633 - 2696 4.7e-06 WDR3 second beta-propeller domain
WD40 PF00400 2663 - 2695 1.3e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1004, 2822, 8408
AarI CACCTGC 1 cut(s) 1896
AasI GACNNNNNNGTC 1 cut(s) 8285
Acc16I TGCGCA 1 cut(s) 7799
Acc36I ACCTGC 1 cut(s) 1896
AccB1I GGYRCC 1 cut(s) 3303
AccB7I CCANNNNNTGG 6 cut(s) 416, 2111, 4726, 5635, 6415, 8135
AccBSI CCGCTC 2 cut(s) 6898, 6919
AccI GTMKAC 1 cut(s) 1657
AccII CGCG 3 cut(s) 1747, 2596, 5886
AccIII TCCGGA 3 cut(s) 3658, 5082, 5215
AclI AACGTT 2 cut(s) 7386, 8727
AcoI YGGCCR 5 cut(s) 6332, 6470, 6760, 7729, 8175
AcyI GRCGYC 1 cut(s) 1754
AdeI CACNNNGTG 1 cut(s) 4523
AfeI AGCGCT 3 cut(s) 5521, 6701, 7613
AflIII ACRYGT 5 cut(s) 2594, 3228, 5884, 6750, 8015
AhlI ACTAGT 2 cut(s) 386, 7781
AjuI GAANNNNNNNTTGG 8 cut(s) 2524, 2556, 4933, 4965, 5788, 5820, 7977, 8009
AloI GAACNNNNNNTCC 2 cut(s) 8543, 8575
Alw21I GWGCWC 4 cut(s) 2800, 3625, 5200, 8235
AlwNI CAGNNNCTG 6 cut(s) 416, 1298, 4031, 4034, 4726, 8821
Ama87I CYCGRG 3 cut(s) 2228, 6976, 8828
Aor13HI TCCGGA 3 cut(s) 3658, 5082, 5215
Aor51HI AGCGCT 3 cut(s) 5521, 6701, 7613
AseI ATTAAT 1 cut(s) 6071
Asp700I GAANNNNTTC 5 cut(s) 205, 1438, 2505, 2844, 7140
AsuC2I CCSGG 4 cut(s) 271, 958, 1137, 7442
AsuII TTCGAA 2 cut(s) 6933, 7567
AsuNHI GCTAGC 1 cut(s) 1810
AvaI CYCGRG 3 cut(s) 2228, 6976, 8828
AxyI CCTNAGG 3 cut(s) 4840, 7164, 7848
BaeGI GKGCMC 5 cut(s) 963, 3306, 6529, 8001, 8008
BalI TGGCCA 3 cut(s) 6472, 7731, 8177
BamHI GGATCC 2 cut(s) 1559, 6300
BanI GGYRCC 1 cut(s) 3303
BanII GRGCYC 3 cut(s) 2800, 3366, 7291
BarI GAAGNNNNNNTAC 6 cut(s) 4608, 4640, 6914, 6946, 8208, 8240
BauI CACGAG 3 cut(s) 820, 5472, 7689
BbsI GAAGAC 8 cut(s) 12, 222, 1431, 4794, 5032, 6471, 7122, 8292
Bbv12I GWGCWC 4 cut(s) 2800, 3625, 5200, 8235
BbvCI CCTCAGC 3 cut(s) 1974, 4455, 7630
BceAI ACGGC 7 cut(s) 861, 1653, 4257, 5784, 6747, 7516, 8360
BcgI CGANNNNNNTGC 4 cut(s) 2219, 2253, 2363, 2397
BciVI GTATCC 3 cut(s) 4627, 5632, 6798
BclI TGATCA 9 cut(s) 217, 3804, 4735, 5962, 6112, 6421, 6448, 7060, 8349
BcnI CCSGG 4 cut(s) 271, 958, 1137, 7442
BcuI ACTAGT 2 cut(s) 386, 7781
BfmI CTRYAG 8 cut(s) 1290, 2858, 4023, 4044, 4353, 4386, 5274, 8666
BfoI RGCGCY 5 cut(s) 4372, 5523, 6703, 7615, 8150
BfuAI ACCTGC 1 cut(s) 1896
BfuI GTATCC 3 cut(s) 4627, 5632, 6798
BglI GCCNNNNNGGC 1 cut(s) 7640
BglII AGATCT 2 cut(s) 5476, 6862
BlpI GCTNAGC 2 cut(s) 4095, 4392
BmcAI AGTACT 2 cut(s) 4968, 8071
BmeT110I CYCGRG 3 cut(s) 2228, 6976, 8828
BmrI ACTGGG 3 cut(s) 4506, 6276, 7253
BmtI GCTAGC 1 cut(s) 1814
BmuI ACTGGG 3 cut(s) 4506, 6276, 7253
BoxI GACNNNNGTC 2 cut(s) 2053, 2694
BpiI GAAGAC 8 cut(s) 12, 222, 1431, 4794, 5032, 6471, 7122, 8292
BplI GAGNNNNNCTC 2 cut(s) 6670, 6702
BpmI CTGGAG 7 cut(s) 465, 1965, 3930, 5417, 7005, 8016, 8163
Bpu10I CCTNAGC 4 cut(s) 1974, 2035, 4455, 7630
Bpu1102I GCTNAGC 2 cut(s) 4095, 4392
Bpu14I TTCGAA 2 cut(s) 6933, 7567
BpuEI CTTGAG 4 cut(s) 1514, 3996, 5366, 7313
BpuMI CCSGG 4 cut(s) 271, 958, 1137, 7442
BsaAI YACGTR 2 cut(s) 1832, 5723
BsaBI GATNNNNATC 2 cut(s) 2985, 3719
BsaHI GRCGYC 1 cut(s) 1754
BsaI GGTCTC 3 cut(s) 2561, 3066, 3591
BsaWI WCCGGW 3 cut(s) 3658, 5082, 5215
BsaXI ACNNNNNCTCC 8 cut(s) 1621, 1651, 1909, 1939, 8217, 8247, 8277, 8307
Bse21I CCTNAGG 3 cut(s) 4840, 7164, 7848
Bse3DI GCAATG 8 cut(s) 1068, 1287, 1795, 3404, 4368, 5259, 5271, 5535
Bse8I GATNNNNATC 2 cut(s) 2985, 3719
BseAI TCCGGA 3 cut(s) 3658, 5082, 5215
BseJI GATNNNNATC 2 cut(s) 2985, 3719
BseMI GCAATG 8 cut(s) 1068, 1287, 1795, 3404, 4368, 5259, 5271, 5535
BseRI GAGGAG 6 cut(s) 599, 1629, 2324, 3947, 4828, 6618
BseSI GKGCMC 5 cut(s) 963, 3306, 6529, 8001, 8008
BseYI CCCAGC 2 cut(s) 6702, 7497
BsgI GTGCAG 4 cut(s) 2136, 2393, 3894, 5526
Bsh1236I CGCG 3 cut(s) 1747, 2596, 5886
Bsh1285I CGRYCG 1 cut(s) 4245
BshNI GGYRCC 1 cut(s) 3303
BsiEI CGRYCG 1 cut(s) 4245
BsiHKAI GWGCWC 4 cut(s) 2800, 3625, 5200, 8235
BsiHKCI CYCGRG 3 cut(s) 2228, 6976, 8828
BsiWI CGTACG 1 cut(s) 2384
BsmI GAATGC 5 cut(s) 922, 2791, 5109, 5494, 8326
Bso31I GGTCTC 3 cut(s) 2561, 3066, 3591
BsoBI CYCGRG 3 cut(s) 2228, 6976, 8828
Bsp119I TTCGAA 2 cut(s) 6933, 7567
Bsp13I TCCGGA 3 cut(s) 3658, 5082, 5215
Bsp1407I TGTACA 3 cut(s) 2776, 3231, 7270
Bsp1720I GCTNAGC 2 cut(s) 4095, 4392
Bsp19I CCATGG 3 cut(s) 633, 4443, 8520
BspEI TCCGGA 3 cut(s) 3658, 5082, 5215
BspFNI CGCG 3 cut(s) 1747, 2596, 5886
BspHI TCATGA 1 cut(s) 5113
BspMAI CTGCAG 7 cut(s) 1294, 2862, 4027, 4048, 4357, 4390, 5278
BspMI ACCTGC 1 cut(s) 1896
BspOI GCTAGC 1 cut(s) 1814
BspT104I TTCGAA 2 cut(s) 6933, 7567
BspT107I GGYRCC 1 cut(s) 3303
BspTNI GGTCTC 3 cut(s) 2561, 3066, 3591
BsrBI CCGCTC 2 cut(s) 6898, 6919
BsrDI GCAATG 8 cut(s) 1068, 1287, 1795, 3404, 4368, 5259, 5271, 5535
BsrGI TGTACA 3 cut(s) 2776, 3231, 7270
BssNI GRCGYC 1 cut(s) 1754
BssSI CACGAG 3 cut(s) 820, 5472, 7689
Bst2BI CACGAG 3 cut(s) 820, 5472, 7689
BstACI GRCGYC 1 cut(s) 1754
BstAPI GCANNNNNTGC 6 cut(s) 1244, 1298, 4031, 4088, 4190, 5540
BstAUI TGTACA 3 cut(s) 2776, 3231, 7270
BstBAI YACGTR 2 cut(s) 1832, 5723
BstBI TTCGAA 2 cut(s) 6933, 7567
BstDSI CCRYGG 5 cut(s) 633, 843, 4443, 6800, 8520
BstEII GGTNACC 1 cut(s) 182
BstENI CCTNNNNNAGG 2 cut(s) 744, 7163
BstFNI CGCG 3 cut(s) 1747, 2596, 5886
BstH2I RGCGCY 5 cut(s) 4372, 5523, 6703, 7615, 8150
BstMCI CGRYCG 1 cut(s) 4245
BstPAI GACNNNNGTC 2 cut(s) 2053, 2694
BstPI GGTNACC 1 cut(s) 182
BstSFI CTRYAG 8 cut(s) 1290, 2858, 4023, 4044, 4353, 4386, 5274, 8666
BstSLI GKGCMC 5 cut(s) 963, 3306, 6529, 8001, 8008
BstSNI TACGTA 1 cut(s) 1832
BstUI CGCG 3 cut(s) 1747, 2596, 5886
BstV2I GAAGAC 8 cut(s) 12, 222, 1431, 4794, 5032, 6471, 7122, 8292
BstX2I RGATCY 9 cut(s) 1185, 1559, 3631, 3705, 4682, 5476, 6300, 6862, 6937
BstXI CCANNNNNNTGG 5 cut(s) 3374, 3839, 4450, 7098, 8185
BstYI RGATCY 9 cut(s) 1185, 1559, 3631, 3705, 4682, 5476, 6300, 6862, 6937
Bsu36I CCTNAGG 3 cut(s) 4840, 7164, 7848
BsuI GTATCC 3 cut(s) 4627, 5632, 6798
BtgI CCRYGG 5 cut(s) 633, 843, 4443, 6800, 8520
BtgZI GCGATG 4 cut(s) 3264, 3530, 5854, 7923
BtsI GCAGTG 6 cut(s) 597, 1323, 2086, 4540, 5124, 6996
BveI ACCTGC 1 cut(s) 1896
CaiI CAGNNNCTG 6 cut(s) 416, 1298, 4031, 4034, 4726, 8821
CciI TCATGA 1 cut(s) 5113
CseI GACGC 2 cut(s) 1743, 2585
CspCI CAANNNNNGTGG 2 cut(s) 2112, 2147
DraI TTTAAA 1 cut(s) 3952
DraIII CACNNNGTG 1 cut(s) 4523
DrdI GACNNNNNNGTC 1 cut(s) 8285
DseDI GACNNNNNNGTC 1 cut(s) 8285
EaeI YGGCCR 5 cut(s) 6332, 6470, 6760, 7729, 8175
Ecl136II GAGCTC 1 cut(s) 2798
Eco105I TACGTA 1 cut(s) 1832
Eco147I AGGCCT 2 cut(s) 1800, 6625
Eco24I GRGCYC 3 cut(s) 2800, 3366, 7291
Eco31I GGTCTC 3 cut(s) 2561, 3066, 3591
Eco32I GATATC 3 cut(s) 3853, 5767, 6509
Eco47III AGCGCT 3 cut(s) 5521, 6701, 7613
Eco53kI GAGCTC 1 cut(s) 2798
Eco81I CCTNAGG 3 cut(s) 4840, 7164, 7848
Eco88I CYCGRG 3 cut(s) 2228, 6976, 8828
Eco91I GGTNACC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 2798
EcoNI CCTNNNNNAGG 2 cut(s) 744, 7163
EcoO109I RGGNCCY 6 cut(s) 1085, 1978, 2048, 2225, 3489, 8219
EcoO65I GGTNACC 1 cut(s) 182
EcoRI GAATTC 3 cut(s) 2244, 4846, 8088
EcoRV GATATC 3 cut(s) 3853, 5767, 6509
EcoT22I ATGCAT 3 cut(s) 1462, 6190, 6601
EcoT38I GRGCYC 3 cut(s) 2800, 3366, 7291
FalI AAGNNNNNCTT 8 cut(s) 1423, 1455, 1564, 1596, 3507, 3539, 5788, 5820
FauI CCCGC 2 cut(s) 447, 5098
FauNDI CATATG 3 cut(s) 1332, 4429, 7551
FbaI TGATCA 9 cut(s) 217, 3804, 4735, 5962, 6112, 6421, 6448, 7060, 8349
FblI GTMKAC 1 cut(s) 1657
FriOI GRGCYC 3 cut(s) 2800, 3366, 7291
FspAI RTGCGCAY 1 cut(s) 7799
FspI TGCGCA 1 cut(s) 7799
GsaI CCCAGC 2 cut(s) 6706, 7501
GsuI CTGGAG 7 cut(s) 465, 1965, 3930, 5417, 7005, 8016, 8163
HaeII RGCGCY 5 cut(s) 4372, 5523, 6703, 7615, 8150
HgaI GACGC 2 cut(s) 1743, 2585
Hin1I GRCGYC 1 cut(s) 1754
HincII GTYRAC 6 cut(s) 3241, 3510, 6394, 6547, 7506, 8731
HindII GTYRAC 6 cut(s) 3241, 3510, 6394, 6547, 7506, 8731
HindIII AAGCTT 8 cut(s) 202, 529, 4629, 5380, 5914, 7220, 8687, 8797
Hpy99I CGWCG 3 cut(s) 1668, 1674, 2700
Hsp92I GRCGYC 1 cut(s) 1754
KflI GGGWCCC 1 cut(s) 2225
Kpn2I TCCGGA 3 cut(s) 3658, 5082, 5215
Ksp22I TGATCA 9 cut(s) 217, 3804, 4735, 5962, 6112, 6421, 6448, 7060, 8349
MbiI CCGCTC 2 cut(s) 6898, 6919
MfeI CAATTG 3 cut(s) 1239, 6876, 8768
MflI RGATCY 9 cut(s) 1185, 1559, 3631, 3705, 4682, 5476, 6300, 6862, 6937
MlsI TGGCCA 3 cut(s) 6472, 7731, 8177
MluI ACGCGT 2 cut(s) 2594, 5884
MluNI TGGCCA 3 cut(s) 6472, 7731, 8177
MmeI TCCRAC 7 cut(s) 2958, 3795, 3824, 4442, 5653, 6341, 8586
Mox20I TGGCCA 3 cut(s) 6472, 7731, 8177
Mph1103I ATGCAT 3 cut(s) 1462, 6190, 6601
MroI TCCGGA 3 cut(s) 3658, 5082, 5215
MroXI GAANNNNTTC 5 cut(s) 205, 1438, 2505, 2844, 7140
MscI TGGCCA 3 cut(s) 6472, 7731, 8177
MslI CAYNNNNRTG 8 cut(s) 299, 2997, 3372, 4934, 6183, 6429, 7320, 7676
Msp20I TGGCCA 3 cut(s) 6472, 7731, 8177
MunI CAATTG 3 cut(s) 1239, 6876, 8768
Mva1269I GAATGC 5 cut(s) 922, 2791, 5109, 5494, 8326
MvnI CGCG 3 cut(s) 1747, 2596, 5886
NciI CCSGG 4 cut(s) 271, 958, 1137, 7442
NcoI CCATGG 3 cut(s) 633, 4443, 8520
NdeI CATATG 3 cut(s) 1332, 4429, 7551
NheI GCTAGC 1 cut(s) 1810
NmeAIII GCCGAG 1 cut(s) 3644
NsbI TGCGCA 1 cut(s) 7799
NsiI ATGCAT 3 cut(s) 1462, 6190, 6601
NspV TTCGAA 2 cut(s) 6933, 7567
PaeI GCATGC 2 cut(s) 5009, 6188
PaeR7I CTCGAG 1 cut(s) 6976
PagI TCATGA 1 cut(s) 5113
PaqCI CACCTGC 1 cut(s) 1896
PceI AGGCCT 2 cut(s) 1800, 6625
PciI ACATGT 1 cut(s) 8015
PcsI WCGNNNNNNNCGW 2 cut(s) 1669, 8573
PctI GAATGC 5 cut(s) 922, 2791, 5109, 5494, 8326
PdmI GAANNNNTTC 5 cut(s) 205, 1438, 2505, 2844, 7140
Pfl23II CGTACG 1 cut(s) 2384
PflFI GACNNNGTC 1 cut(s) 3467
PflMI CCANNNNNTGG 6 cut(s) 416, 2111, 4726, 5635, 6415, 8135
PfoI TCCNGGA 3 cut(s) 269, 1135, 4547
Ple19I CGATCG 1 cut(s) 4245
Ppu21I YACGTR 2 cut(s) 1832, 5723
PpuMI RGGWCCY 3 cut(s) 1978, 2048, 2225
PscI ACATGT 1 cut(s) 8015
PshAI GACNNNNGTC 2 cut(s) 2053, 2694
PshBI ATTAAT 1 cut(s) 6071
PsiI TTATAA 3 cut(s) 1004, 2822, 8408
Psp124BI GAGCTC 1 cut(s) 2800
Psp1406I AACGTT 2 cut(s) 7386, 8727
Psp5II RGGWCCY 3 cut(s) 1978, 2048, 2225
PspEI GGTNACC 1 cut(s) 182
PspFI CCCAGC 2 cut(s) 6702, 7497
PspLI CGTACG 1 cut(s) 2384
PspPPI RGGWCCY 3 cut(s) 1978, 2048, 2225
PspXI VCTCGAGB 1 cut(s) 6976
PsrI GAACNNNNNNTAC 2 cut(s) 6013, 6045
PstI CTGCAG 7 cut(s) 1294, 2862, 4027, 4048, 4357, 4390, 5278
PstNI CAGNNNCTG 6 cut(s) 416, 1298, 4031, 4034, 4726, 8821
PsuI RGATCY 9 cut(s) 1185, 1559, 3631, 3705, 4682, 5476, 6300, 6862, 6937
PsyI GACNNNGTC 1 cut(s) 3467
PvuI CGATCG 1 cut(s) 4245
RseI CAYNNNNRTG 8 cut(s) 299, 2997, 3372, 4934, 6183, 6429, 7320, 7676
SacI GAGCTC 1 cut(s) 2800
ScaI AGTACT 2 cut(s) 4968, 8071
SfcI CTRYAG 8 cut(s) 1290, 2858, 4023, 4044, 4353, 4386, 5274, 8666
Sfr274I CTCGAG 1 cut(s) 6976
SfuI TTCGAA 2 cut(s) 6933, 7567
SlaI CTCGAG 1 cut(s) 6976
SmiMI CAYNNNNRTG 8 cut(s) 299, 2997, 3372, 4934, 6183, 6429, 7320, 7676
SmlI CTYRAG 5 cut(s) 1493, 4011, 5345, 6976, 7292
SmoI CTYRAG 5 cut(s) 1493, 4011, 5345, 6976, 7292
SnaBI TACGTA 1 cut(s) 1832
SpeI ACTAGT 2 cut(s) 386, 7781
SphI GCATGC 2 cut(s) 5009, 6188
SseBI AGGCCT 2 cut(s) 1800, 6625
SspI AATATT 2 cut(s) 6069, 6643
SstI GAGCTC 1 cut(s) 2800
StuI AGGCCT 2 cut(s) 1800, 6625
TaqII GACCGA 1 cut(s) 336
TatI WGTACW 8 cut(s) 1094, 2776, 3231, 4467, 4966, 5695, 7270, 8069
TauI GCSGC 8 cut(s) 1013, 1232, 1253, 1298, 5456, 5471, 5777, 6901
TspGWI ACGGA 6 cut(s) 1026, 2684, 2937, 5500, 7451, 7879
Tth111I GACNNNGTC 1 cut(s) 3467
Van91I CCANNNNNTGG 6 cut(s) 416, 2111, 4726, 5635, 6415, 8135
VspI ATTAAT 1 cut(s) 6071
XagI CCTNNNNNAGG 2 cut(s) 744, 7163
XbaI TCTAGA 2 cut(s) 1757, 2518
XcmI CCANNNNNNNNNTGG 4 cut(s) 413, 781, 3374, 7258
XhoI CTCGAG 1 cut(s) 6976
XmiI GTMKAC 1 cut(s) 1657
XmnI GAANNNNTTC 5 cut(s) 205, 1438, 2505, 2844, 7140
ZrmI AGTACT 2 cut(s) 4968, 8071
Zsp2I ATGCAT 3 cut(s) 1462, 6190, 6601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.