BEACH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G45540 AT2G45540 AT2G45540 AT2G45540 AT2G45540 AT2G45540 |
| fragaria_vesca | FvH4_7g12350 FvH4_7g12350 FvH4_7g12350 FvH4_7g12350 |
| malus_domestica | MD02G1199600.v1.1 |
| prunus_persica | Prupe.2G149000_v2.0.a1 Prupe.2G149000_v2.0.a1 Prupe.2G149000_v2.0.a1 |
| pyrus_communis | pycom02g16360 |
| rosa_chinensis | RchiOBHm_Chr1g0351141 |
| rosa_laevigata | RLG00000028428 |
| rosa_multiflora | Rmu_sc0001619.1_g000013 |
| rosa_roxburghii | Rroxscaffold_4G00304030 |
| rosa_rugosa | Rorug01G0216800 Rorug01G0216900 |
| rosa_samantha | Rh1AG231200 Rh1CG215100 |
| rosa_wichuraiana | Rw1G020100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 3224, 3860, 6386 |
| AarI | CACCTGC | 4 cut(s) | 157, 782, 5296, 6247 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 7955 |
| Acc36I | ACCTGC | 8 cut(s) | 157, 205, 482, 782, 1180, 2062, 5296, 6247 |
| AccB1I | GGYRCC | 3 cut(s) | 2030, 5321, 6235 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1110, 4801 |
| AccBSI | CCGCTC | 1 cut(s) | 5392 |
| AccI | GTMKAC | 3 cut(s) | 395, 6163, 8834 |
| AccII | CGCG | 1 cut(s) | 3981 |
| AccIII | TCCGGA | 2 cut(s) | 556, 7605 |
| AcoI | YGGCCR | 4 cut(s) | 1235, 4417, 5135, 5571 |
| AcuI | CTGAAG | 9 cut(s) | 638, 2760, 3192, 5655, 6737, 7671, 8599, 8706, 8768 |
| AcvI | CACGTG | 2 cut(s) | 4241, 5513 |
| AcyI | GRCGYC | 2 cut(s) | 3542, 8242 |
| AdeI | CACNNNGTG | 1 cut(s) | 1055 |
| AfeI | AGCGCT | 2 cut(s) | 3675, 7021 |
| AflII | CTTAAG | 1 cut(s) | 8639 |
| AflIII | ACRYGT | 4 cut(s) | 7342, 7729, 7943, 8263 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5068 |
| AjiI | CACGTC | 1 cut(s) | 410 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2611, 2643, 4975, 5007, 6440, 6472 |
| Alw21I | GWGCWC | 8 cut(s) | 917, 1393, 2893, 3415, 6568, 8312, 8358, 8515 |
| Alw44I | GTGCAC | 3 cut(s) | 1389, 3411, 6564 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 179, 1337, 4466, 7694 |
| Ama87I | CYCGRG | 4 cut(s) | 774, 2023, 3669, 7184 |
| Aor13HI | TCCGGA | 2 cut(s) | 556, 7605 |
| Aor51HI | AGCGCT | 2 cut(s) | 3675, 7021 |
| ApaLI | GTGCAC | 3 cut(s) | 1389, 3411, 6564 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 407, 439, 4831, 4863 |
| AseI | ATTAAT | 1 cut(s) | 1124 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179 |
| AspLEI | GCGC | 7 cut(s) | 3676, 3882, 3981, 5850, 7022, 7645, 8045 |
| AsuC2I | CCSGG | 1 cut(s) | 1678 |
| AsuII | TTCGAA | 2 cut(s) | 6768, 6863 |
| AsuNHI | GCTAGC | 1 cut(s) | 1894 |
| AvaI | CYCGRG | 4 cut(s) | 774, 2023, 3669, 7184 |
| AvaII | GGWCC | 7 cut(s) | 1169, 1217, 1814, 2074, 2132, 6283, 6976 |
| AxyI | CCTNAGG | 2 cut(s) | 2035, 2313 |
| BaeGI | GKGCMC | 3 cut(s) | 1393, 3415, 6568 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 6246, 6279, 7683, 7716, 7969, 8002, 8097, 8130 |
| BalI | TGGCCA | 3 cut(s) | 1237, 4419, 5573 |
| BamHI | GGATCC | 3 cut(s) | 6031, 6843, 8096 |
| BanI | GGYRCC | 3 cut(s) | 2030, 5321, 6235 |
| BanII | GRGCYC | 5 cut(s) | 407, 2893, 3330, 8312, 8515 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 1507, 1539, 3712, 3744, 3825, 3857, 8244, 8276 |
| BbrPI | CACGTG | 2 cut(s) | 4241, 5513 |
| BbsI | GAAGAC | 9 cut(s) | 207, 2349, 3840, 4221, 5205, 5876, 6872, 7161, 8163 |
| Bbv12I | GWGCWC | 8 cut(s) | 917, 1393, 2893, 3415, 6568, 8312, 8358, 8515 |
| BceAI | ACGGC | 4 cut(s) | 1215, 1740, 6092, 6677 |
| BciVI | GTATCC | 2 cut(s) | 43, 6837 |
| BclI | TGATCA | 3 cut(s) | 388, 7099, 8385 |
| BcnI | CCSGG | 1 cut(s) | 1678 |
| BfoI | RGCGCY | 2 cut(s) | 3677, 7023 |
| BfrI | CTTAAG | 1 cut(s) | 8639 |
| BfuAI | ACCTGC | 8 cut(s) | 157, 205, 482, 782, 1180, 2062, 5296, 6247 |
| BfuI | GTATCC | 2 cut(s) | 43, 6837 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 338, 6113 |
| BglII | AGATCT | 2 cut(s) | 7206, 8314 |
| BlpI | GCTNAGC | 2 cut(s) | 1994, 4467 |
| Bme18I | GGWCC | 7 cut(s) | 1169, 1217, 1814, 2074, 2132, 6283, 6976 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5068 |
| BmeT110I | CYCGRG | 4 cut(s) | 774, 2023, 3669, 7184 |
| BmgBI | CACGTC | 1 cut(s) | 410 |
| BmrI | ACTGGG | 5 cut(s) | 663, 1980, 2807, 6974, 7475 |
| BmtI | GCTAGC | 1 cut(s) | 1898 |
| BmuI | ACTGGG | 5 cut(s) | 663, 1980, 2807, 6974, 7475 |
| BpiI | GAAGAC | 9 cut(s) | 207, 2349, 3840, 4221, 5205, 5876, 6872, 7161, 8163 |
| BpmI | CTGGAG | 9 cut(s) | 421, 1157, 4034, 4658, 5325, 5919, 6590, 8031, 8690 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3033, 7647 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1994, 4467 |
| Bpu14I | TTCGAA | 2 cut(s) | 6768, 6863 |
| BpuMI | CCSGG | 1 cut(s) | 1678 |
| Bsa29I | ATCGAT | 1 cut(s) | 7230 |
| BsaAI | YACGTR | 3 cut(s) | 4241, 5513, 7345 |
| BsaBI | GATNNNNATC | 1 cut(s) | 747 |
| BsaHI | GRCGYC | 2 cut(s) | 3542, 8242 |
| BsaI | GGTCTC | 6 cut(s) | 2927, 3957, 5895, 6694, 6894, 8530 |
| BsaWI | WCCGGW | 3 cut(s) | 556, 3959, 7605 |
| Bse118I | RCCGGY | 1 cut(s) | 8521 |
| Bse21I | CCTNAGG | 2 cut(s) | 2035, 2313 |
| Bse8I | GATNNNNATC | 1 cut(s) | 747 |
| BseAI | TCCGGA | 2 cut(s) | 556, 7605 |
| BseCI | ATCGAT | 1 cut(s) | 7230 |
| BseJI | GATNNNNATC | 1 cut(s) | 747 |
| BseRI | GAGGAG | 6 cut(s) | 29, 2411, 5140, 5337, 5605, 5995 |
| BseSI | GKGCMC | 3 cut(s) | 1393, 3415, 6568 |
| BseYI | CCCAGC | 2 cut(s) | 5458, 8625 |
| BsgI | GTGCAG | 4 cut(s) | 2480, 3945, 4617, 5565 |
| Bsh1236I | CGCG | 1 cut(s) | 3981 |
| BshNI | GGYRCC | 3 cut(s) | 2030, 5321, 6235 |
| BshVI | ATCGAT | 1 cut(s) | 7230 |
| BsiHKAI | GWGCWC | 8 cut(s) | 917, 1393, 2893, 3415, 6568, 8312, 8358, 8515 |
| BsiHKCI | CYCGRG | 4 cut(s) | 774, 2023, 3669, 7184 |
| BsiSI | CCGG | 5 cut(s) | 557, 1678, 3960, 7606, 8522 |
| BsmBI | CGTCTC | 1 cut(s) | 5962 |
| Bso31I | GGTCTC | 6 cut(s) | 2927, 3957, 5895, 6694, 6894, 8530 |
| BsoBI | CYCGRG | 4 cut(s) | 774, 2023, 3669, 7184 |
| Bsp119I | TTCGAA | 2 cut(s) | 6768, 6863 |
| Bsp13I | TCCGGA | 2 cut(s) | 556, 7605 |
| Bsp1407I | TGTACA | 2 cut(s) | 79, 893 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1994, 4467 |
| Bsp19I | CCATGG | 3 cut(s) | 1889, 6839, 7283 |
| BspDI | ATCGAT | 1 cut(s) | 7230 |
| BspEI | TCCGGA | 2 cut(s) | 556, 7605 |
| BspFNI | CGCG | 1 cut(s) | 3981 |
| BspHI | TCATGA | 3 cut(s) | 61, 2677, 5155 |
| BspMAI | CTGCAG | 8 cut(s) | 1318, 1333, 4432, 4459, 5509, 7669, 7810, 8842 |
| BspMI | ACCTGC | 8 cut(s) | 157, 205, 482, 782, 1180, 2062, 5296, 6247 |
| BspOI | GCTAGC | 1 cut(s) | 1898 |
| BspT104I | TTCGAA | 2 cut(s) | 6768, 6863 |
| BspT107I | GGYRCC | 3 cut(s) | 2030, 5321, 6235 |
| BspTI | CTTAAG | 1 cut(s) | 8639 |
| BspTNI | GGTCTC | 6 cut(s) | 2927, 3957, 5895, 6694, 6894, 8530 |
| BsrBI | CCGCTC | 1 cut(s) | 5392 |
| BsrFI | RCCGGY | 1 cut(s) | 8521 |
| BsrGI | TGTACA | 2 cut(s) | 79, 893 |
| BssAI | RCCGGY | 1 cut(s) | 8521 |
| BssNI | GRCGYC | 2 cut(s) | 3542, 8242 |
| BssT1I | CCWWGG | 9 cut(s) | 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019 |
| Bst6I | CTCTTC | 8 cut(s) | 6, 2283, 3562, 4869, 5612, 6174, 6713, 8368 |
| BstACI | GRCGYC | 2 cut(s) | 3542, 8242 |
| BstAFI | CTTAAG | 1 cut(s) | 8639 |
| BstAUI | TGTACA | 2 cut(s) | 79, 893 |
| BstBAI | YACGTR | 3 cut(s) | 4241, 5513, 7345 |
| BstBI | TTCGAA | 2 cut(s) | 6768, 6863 |
| BstDSI | CCRYGG | 5 cut(s) | 1421, 1889, 6108, 6839, 7283 |
| BstFNI | CGCG | 1 cut(s) | 3981 |
| BstH2I | RGCGCY | 2 cut(s) | 3677, 7023 |
| BstHHI | GCGC | 7 cut(s) | 3676, 3882, 3981, 5850, 7022, 7645, 8045 |
| BstSLI | GKGCMC | 3 cut(s) | 1393, 3415, 6568 |
| BstUI | CGCG | 1 cut(s) | 3981 |
| BstV2I | GAAGAC | 9 cut(s) | 207, 2349, 3840, 4221, 5205, 5876, 6872, 7161, 8163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3890 |
| Bsu15I | ATCGAT | 1 cut(s) | 7230 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2035, 2313 |
| BsuI | GTATCC | 2 cut(s) | 43, 6837 |
| BsuTUI | ATCGAT | 1 cut(s) | 7230 |
| BtgI | CCRYGG | 5 cut(s) | 1421, 1889, 6108, 6839, 7283 |
| BtgZI | GCGATG | 3 cut(s) | 923, 2406, 8697 |
| BtrI | CACGTC | 1 cut(s) | 410 |
| BtsI | GCAGTG | 6 cut(s) | 2223, 2259, 3413, 4440, 4615, 8038 |
| BveI | ACCTGC | 8 cut(s) | 157, 205, 482, 782, 1180, 2062, 5296, 6247 |
| CaiI | CAGNNNCTG | 4 cut(s) | 179, 1337, 4466, 7694 |
| CciI | TCATGA | 3 cut(s) | 61, 2677, 5155 |
| CfoI | GCGC | 7 cut(s) | 3676, 3882, 3981, 5850, 7022, 7645, 8045 |
| Cfr10I | RCCGGY | 1 cut(s) | 8521 |
| ClaI | ATCGAT | 1 cut(s) | 7230 |
| CseI | GACGC | 3 cut(s) | 1862, 3531, 8231 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1887, 1922, 2212, 2247, 6090, 6125 |
| DraI | TTTAAA | 1 cut(s) | 4003 |
| DraIII | CACNNNGTG | 1 cut(s) | 1055 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 7955 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5068 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 7955 |
| EaeI | YGGCCR | 4 cut(s) | 1235, 4417, 5135, 5571 |
| Eam1104I | CTCTTC | 8 cut(s) | 6, 2283, 3562, 4869, 5612, 6174, 6713, 8368 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5068 |
| EarI | CTCTTC | 8 cut(s) | 6, 2283, 3562, 4869, 5612, 6174, 6713, 8368 |
| EciI | GGCGGA | 2 cut(s) | 7104, 7269 |
| Ecl136II | GAGCTC | 3 cut(s) | 2891, 8310, 8513 |
| Eco130I | CCWWGG | 9 cut(s) | 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019 |
| Eco24I | GRGCYC | 5 cut(s) | 407, 2893, 3330, 8312, 8515 |
| Eco31I | GGTCTC | 6 cut(s) | 2927, 3957, 5895, 6694, 6894, 8530 |
| Eco32I | GATATC | 2 cut(s) | 6548, 7473 |
| Eco47I | GGWCC | 7 cut(s) | 1169, 1217, 1814, 2074, 2132, 6283, 6976 |
| Eco47III | AGCGCT | 2 cut(s) | 3675, 7021 |
| Eco53kI | GAGCTC | 3 cut(s) | 2891, 8310, 8513 |
| Eco57I | CTGAAG | 9 cut(s) | 638, 2760, 3192, 5655, 6737, 7671, 8599, 8706, 8768 |
| Eco72I | CACGTG | 2 cut(s) | 4241, 5513 |
| Eco81I | CCTNAGG | 2 cut(s) | 2035, 2313 |
| Eco88I | CYCGRG | 4 cut(s) | 774, 2023, 3669, 7184 |
| EcoICRI | GAGCTC | 3 cut(s) | 2891, 8310, 8513 |
| EcoO109I | RGGNCCY | 8 cut(s) | 1169, 1784, 2132, 2309, 5551, 6976, 7850, 8255 |
| EcoRI | GAATTC | 3 cut(s) | 353, 5151, 6928 |
| EcoRV | GATATC | 2 cut(s) | 6548, 7473 |
| EcoT14I | CCWWGG | 9 cut(s) | 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019 |
| EcoT22I | ATGCAT | 6 cut(s) | 384, 1546, 4829, 5862, 7684, 7716 |
| EcoT38I | GRGCYC | 5 cut(s) | 407, 2893, 3330, 8312, 8515 |
| ErhI | CCWWGG | 9 cut(s) | 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019 |
| Esp3I | CGTCTC | 1 cut(s) | 5962 |
| FauI | CCCGC | 3 cut(s) | 1991, 2962, 6790 |
| FauNDI | CATATG | 3 cut(s) | 313, 3646, 4504 |
| FbaI | TGATCA | 3 cut(s) | 388, 7099, 8385 |
| FblI | GTMKAC | 3 cut(s) | 395, 6163, 8834 |
| FriOI | GRGCYC | 5 cut(s) | 407, 2893, 3330, 8312, 8515 |
| GlaI | GCGC | 7 cut(s) | 3675, 3881, 3980, 5849, 7021, 7644, 8044 |
| GsaI | CCCAGC | 2 cut(s) | 5462, 8629 |
| GsuI | CTGGAG | 9 cut(s) | 421, 1157, 4034, 4658, 5325, 5919, 6590, 8031, 8690 |
| HaeII | RGCGCY | 2 cut(s) | 3677, 7023 |
| HapII | CCGG | 5 cut(s) | 557, 1678, 3960, 7606, 8522 |
| HgaI | GACGC | 3 cut(s) | 1862, 3531, 8231 |
| HhaI | GCGC | 7 cut(s) | 3676, 3882, 3981, 5850, 7022, 7645, 8045 |
| Hin1I | GRCGYC | 2 cut(s) | 3542, 8242 |
| Hin6I | GCGC | 7 cut(s) | 3674, 3880, 3979, 5848, 7020, 7643, 8043 |
| HinP1I | GCGC | 7 cut(s) | 3674, 3880, 3979, 5848, 7020, 7643, 8043 |
| HincII | GTYRAC | 4 cut(s) | 220, 2812, 5785, 8835 |
| HindII | GTYRAC | 4 cut(s) | 220, 2812, 5785, 8835 |
| HindIII | AAGCTT | 5 cut(s) | 2528, 4704, 5405, 8636, 8906 |
| HpaII | CCGG | 5 cut(s) | 557, 1678, 3960, 7606, 8522 |
| Hpy99I | CGWCG | 6 cut(s) | 1363, 1752, 1755, 2052, 3547, 8247 |
| Hsp92I | GRCGYC | 2 cut(s) | 3542, 8242 |
| HspAI | GCGC | 7 cut(s) | 3674, 3880, 3979, 5848, 7020, 7643, 8043 |
| Kpn2I | TCCGGA | 2 cut(s) | 556, 7605 |
| Ksp22I | TGATCA | 3 cut(s) | 388, 7099, 8385 |
| MbiI | CCGCTC | 1 cut(s) | 5392 |
| MfeI | CAATTG | 4 cut(s) | 1809, 6102, 6300, 7299 |
| MlsI | TGGCCA | 3 cut(s) | 1237, 4419, 5573 |
| MluNI | TGGCCA | 3 cut(s) | 1237, 4419, 5573 |
| MlyI | GAGTC | 6 cut(s) | 1169, 1956, 2573, 4054, 8177, 8681 |
| MmeI | TCCRAC | 2 cut(s) | 5375, 5794 |
| Mox20I | TGGCCA | 3 cut(s) | 1237, 4419, 5573 |
| Mph1103I | ATGCAT | 6 cut(s) | 384, 1546, 4829, 5862, 7684, 7716 |
| MroI | TCCGGA | 2 cut(s) | 556, 7605 |
| MroXI | GAANNNNTTC | 8 cut(s) | 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179 |
| MscI | TGGCCA | 3 cut(s) | 1237, 4419, 5573 |
| MslI | CAYNNNNRTG | 8 cut(s) | 446, 857, 2597, 4822, 4886, 4948, 6009, 7359 |
| Msp20I | TGGCCA | 3 cut(s) | 1237, 4419, 5573 |
| MspCI | CTTAAG | 1 cut(s) | 8639 |
| MspI | CCGG | 5 cut(s) | 557, 1678, 3960, 7606, 8522 |
| MunI | CAATTG | 4 cut(s) | 1809, 6102, 6300, 7299 |
| MvnI | CGCG | 1 cut(s) | 3981 |
| NciI | CCSGG | 1 cut(s) | 1678 |
| NcoI | CCATGG | 3 cut(s) | 1889, 6839, 7283 |
| NdeI | CATATG | 3 cut(s) | 313, 3646, 4504 |
| NheI | GCTAGC | 1 cut(s) | 1894 |
| NmeAIII | GCCGAG | 1 cut(s) | 7904 |
| NsiI | ATGCAT | 6 cut(s) | 384, 1546, 4829, 5862, 7684, 7716 |
| NspV | TTCGAA | 2 cut(s) | 6768, 6863 |
| PaeI | GCATGC | 5 cut(s) | 1544, 2044, 4831, 4885, 7718 |
| PaeR7I | CTCGAG | 1 cut(s) | 774 |
| PagI | TCATGA | 3 cut(s) | 61, 2677, 5155 |
| PaqCI | CACCTGC | 4 cut(s) | 157, 782, 5296, 6247 |
| PciI | ACATGT | 3 cut(s) | 7729, 7943, 8263 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1753 |
| PdmI | GAANNNNTTC | 8 cut(s) | 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1110, 4801 |
| PfoI | TCCNGGA | 2 cut(s) | 41, 8730 |
| PleI | GAGTC | 6 cut(s) | 1168, 1956, 2572, 4054, 8176, 8680 |
| PmaCI | CACGTG | 2 cut(s) | 4241, 5513 |
| PmlI | CACGTG | 2 cut(s) | 4241, 5513 |
| PpsI | GAGTC | 6 cut(s) | 1168, 1956, 2572, 4054, 8176, 8680 |
| Ppu21I | YACGTR | 3 cut(s) | 4241, 5513, 7345 |
| PpuMI | RGGWCCY | 3 cut(s) | 1169, 2132, 6976 |
| PscI | ACATGT | 3 cut(s) | 7729, 7943, 8263 |
| PshBI | ATTAAT | 1 cut(s) | 1124 |
| PsiI | TTATAA | 3 cut(s) | 3224, 3860, 6386 |
| Psp124BI | GAGCTC | 3 cut(s) | 2893, 8312, 8515 |
| Psp5II | RGGWCCY | 3 cut(s) | 1169, 2132, 6976 |
| PspCI | CACGTG | 2 cut(s) | 4241, 5513 |
| PspFI | CCCAGC | 2 cut(s) | 5458, 8625 |
| PspPPI | RGGWCCY | 3 cut(s) | 1169, 2132, 6976 |
| PstI | CTGCAG | 8 cut(s) | 1318, 1333, 4432, 4459, 5509, 7669, 7810, 8842 |
| PstNI | CAGNNNCTG | 4 cut(s) | 179, 1337, 4466, 7694 |
| PvuII | CAGCTG | 5 cut(s) | 1334, 4589, 6218, 7670, 8625 |
| RseI | CAYNNNNRTG | 8 cut(s) | 446, 857, 2597, 4822, 4886, 4948, 6009, 7359 |
| SacI | GAGCTC | 3 cut(s) | 2893, 8312, 8515 |
| SalI | GTCGAC | 1 cut(s) | 8833 |
| SchI | GAGTC | 6 cut(s) | 1169, 1956, 2573, 4054, 8177, 8681 |
| Sfr274I | CTCGAG | 1 cut(s) | 774 |
| SfuI | TTCGAA | 2 cut(s) | 6768, 6863 |
| SinI | GGWCC | 7 cut(s) | 1169, 1217, 1814, 2074, 2132, 6283, 6976 |
| SlaI | CTCGAG | 1 cut(s) | 774 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 446, 857, 2597, 4822, 4886, 4948, 6009, 7359 |
| SphI | GCATGC | 5 cut(s) | 1544, 2044, 4831, 4885, 7718 |
| SspI | AATATT | 5 cut(s) | 37, 625, 882, 3289, 5629 |
| SstI | GAGCTC | 3 cut(s) | 2893, 8312, 8515 |
| StyI | CCWWGG | 9 cut(s) | 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019 |
| TaqII | GACCGA | 1 cut(s) | 270 |
| TatI | WGTACW | 6 cut(s) | 79, 893, 1178, 2471, 4514, 7483 |
| TauI | GCSGC | 8 cut(s) | 1555, 2098, 4079, 4466, 5137, 5270, 5483, 6308 |
| TspGWI | ACGGA | 6 cut(s) | 163, 2401, 5066, 5079, 6635, 7812 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1110, 4801 |
| Vha464I | CTTAAG | 1 cut(s) | 8639 |
| VneI | GTGCAC | 3 cut(s) | 1389, 3411, 6564 |
| VpaK11BI | GGWCC | 7 cut(s) | 1169, 1217, 1814, 2074, 2132, 6283, 6976 |
| VspI | ATTAAT | 1 cut(s) | 1124 |
| XbaI | TCTAGA | 1 cut(s) | 1576 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3143 |
| XhoI | CTCGAG | 1 cut(s) | 774 |
| XmiI | GTMKAC | 3 cut(s) | 395, 6163, 8834 |
| XmnI | GAANNNNTTC | 8 cut(s) | 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179 |
| Zsp2I | ATGCAT | 6 cut(s) | 384, 1546, 4829, 5862, 7684, 7716 |