RLG00000028428

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008085
Physical Location & Seq
Forward (+)
22717798 .. 22739619
21822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028428

Sequence Viewer

Length: 8955 bp
ATGGAAGAAGAAGAGGAGAGGAAGAAGGAGGTTGAAAATATTTCCAGGAAGGATACAAATAATCATGAGCTGGTTAGTGGTGGACAGGAAAATGTTGATCCATCTCCACAGGAAGCTACCGTTAATACTGATGGTAAAGCTGATGCAGGACGGAATAGCGTAACATTGCAGGTAACAGATTCTGTACATAAAGTTTTGGATGAAGACCAATTCGAGCAGGTCAACTTGAAAGAACAAGATAAGAATGTTGGTGCATCTCATAGCAGTCATGTGGAATCAAATCGGTCATCAAATTCAGACAATGCTAGACAATCATACGGTGGGTTTGAAGTTGCCTCACAGGCTTTTACATCAGAATTCGATACTTCTATGGTTGATGAAATGCATGATGATCAGTCTACCTGGAGCCCACGTCAGGACAGTCAATTTGGTCACTCTAACTACACATCTATGTCGGCTGCTAGTTTTGATTCGTCTTCTTATTATGGGGATGCAGGTTATTCTCCTGTTAGTTCACCCCCAAAACCAAGGCAGAAACCTGTTATGCCCAATGTATCTCCGGAGTTACTACATTTGGTGGATTCTGCCATCATGGGAAAGCCTGAAAGTTTGGACAAACTGAAGAATATTGTTAGTGGTGTGGAGAGTTTTGGAACTGGGGAGGAAATGGAGAGCATTGCTTACTTGGTAGTTGATTCGCTTATTGCAACAATGGGTGGTGTTGAAAGTTATGAAGAAGATGAGGATAACAATCCTCCTAGCGTGATGCTAAACTCTCGAGCTGCCATTGTCGCAGGCGAACTTATTCCCTCGCTGCCTGGGTTTGGTGATAGTCATGCTATCATGTCCCCTCGCACACGAATGGTTAGGGGGCTGCTTGCAATATTACGGGCTTGTACAAGAAACAGAGCGATGTGCTCAATGGCTGGTTTATTAGGAGTTCTATTAAGGTCAGCAGAGAAGATTTTTATGCAGGATGTTAATTCAACGGAGCAAATGAGATGGGATGGAACTCCCTTATGTTACTGCATTCAACATTTAGCAGGGCATTCACTTAGTGTAGTTGATATGCACAGATGGTTTCAAGTCATTACTCGAACGCTTACCACAGTATGGGCAACCCGATTAATGCTTGCACTGGAGAAGGCAATGGGTGGAAAGGAGTCGAGGGGACCTGCATGTACTTTTGAGTTTGATGGTGAAAGTTCAGGTTTGCTTGGTCCAGGGGAAAGCCGTTGGCCATTTGCCAATGGGTATGCGTTTGCAACATGGATTTACATTGAATCATTTGCAGATACATTGAATGCAGCAACCGCTGCAGCAGCGATTGCTGCAGCTGCTGCTGCCAAATCAGGAAAATCGTCGGCAATGTCGGCTGCTGCCGCTGCCAGTGCACTTGCTGGTGAAGGCACAGCACACATGCCACGGTTGTTCAGTTTCTTATCTGCTGACAATCAGGGGTTAGAGGCATACTTCCACGCACAGTTTTTGGTGGTCGAATGTGGTAGTGGAAAGGGTAAGAAATCTTCATTACATTTTACGCATGCATTCAAGCCGCAATGCTGGTACTTCATTGGTCTAGAGCATACTTGCAAGCAAGGGCTGCTTGGGAAAGCAGACAGTGAATTAAGATTGTATATTGATGGTTCGCTGTATGAAACTCGACCTTTTGAGTTCCCCCGGATCTCTAAGCCACTTGCATTTTGCTGCATTGGGACAAATCCTCCTGCTACAATGGCTGGATTACAACGTCGTCGCCGTCAATGCCCTTTGTTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGTCCAGAAAGGATGTCACGTTTGGCTTGTAGGGGAGGGGACGCACTTCCTTCTTTTGGTCATGGGGCAGGGCTGCCATGGCTAGCAACAAACGTGGAAGTGCAAAATATGGCAGAGGAAAGTTCACTTTTGGATGCAGAAATTGGAGGACTCATTCACCTTTTCTACCACCCCAGTTTGCTTAGCGGGCGGTTCTGTCCAGATGCTTCCCCGAGTGGTGCCTCAGGCATGCTTCGACGACCAGCAGAGGTTCTTGGGCAGGTCCATATTGCTACACGAATACGGCCTGTAGCAGCTCTATGGGCCTTTTCCTATGGGGGTCCTATGTCTTTACTTCCTTTAGCAGTTAGCAATGTGGATAAAGATACTCTTGAACCACAACAAGGGAATCCCTCTTTGTCTTTGGCTACCACTGCTCTTGCTGCTCCGATATTCCGAATAATTAGCACTGCTATTCGACACCCTTGGAACAGTGAAGAGTTGTGTCGTACCAAAGGGCCTGAGGTTCTGTCAAGAATCTTGAACTATCTTTTGCAAACTTTGTCTTCACTTTATGCTGGAAAACAAAATGGTGTGGGCGATGAGGAGCTTGTTGCTTCCGTTTTATCACTATGTCAATCTCAGCAGAAGAACTATGCACTCAAGGTGCAGCTTTTCAGTACATTGCTATTGGATCTAAAAGTTTGGAGCTTATGTAACTATGGGCTACAAAAGAAGCTTCTTTCATCACTTGCAGACATGGTTTTTACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTTGACAGTTGCAGAAGATGCTATTGGACAATTCGCGAAAAGGATTCAGTGAATACTTTTTCTCTTTCACTTCATGAGGCAAGCCGGCCTGTGGGTGAGGTGAATGCTTTGGTTGATGAACTCTTAGTCATTATTGAACTTCTTCTAGTAGCAGCACCTCCTTCATTGGCTTCAGATGACGTTCGTTGTTTACTGGGGTTCATGGTTGACTGCCCACAACCCAATCAGGTTGCAAGGGTTTTGCATCTGATTTATAGATTGGTGGTACAGCCAAATACATCAAGAGCTCAGACATTTGCAGAGGCATTTATAGCTTGTGGTGGGATAGAGACCCTTCTTGTTTTGTTGCAACGAGAAGCCAAAGCGGGTGACTACAGTGTTCCAGAATCCATGACCAAGAATGATGAAGTTTTGTCAGTCCAGCCACCTGAGCAAGATGGTAGCGTTGGGGGAGTTTCTGAAAAGAATCAGGATGATGAAGTAGAATTGTCAAAGGAAAAGGAAAATTTGCATGAGAAAGTTGTTGAATCCCAATCCCATGATGGAGCTAGCAGTCCGATTTCTGTTTCTCCTGAGTTGAACATTGCAAGAATGACTTCTGCTTCAGAAAGTACATTTATAAAGAATCTGGGTGGTATAGCTCTCTCAATTAGTGCTGATAATGCAAGGAATAATGTTTACAATATTGATAAAAGTGATGGGGTTGTTGCTCGAATCATCGGGCTCTTAGGTGCTTTAGTTGCTTCTGGGTACTTGAAAATTGGTTCAACTGCTTCCTCGGATATGACTAACAACCTTTTAGGAAGTGCACTGCATGATGGAGGGGGTAGCATGTTTGAAGATAAAGTTTCCCTTTTACTTTTTGCTTTACAGAAGGCTTTCCAAGCAGCACCAAACCGATTGTTGACCAGTAATGTGTATGCAGCGTTGTTGGGGGCGTCGATAAATGCCTCTTCAACTGATGAGGGGTTGAACTTCTATGATTCTGGTCATCAATTTGAACATTTGCAACTTCTTTTGGTTCTCTTGCGGTCGCTTCCATATGCACCCAAGGCTTTTCAAACCCGAGCGCTACAGGATCTTCTGTTTTTGGCTTGCAGTCAGTCAGAAAATAGAAGCAGTCTTACGAACATGGAGGAATGGCCTGAATGGATTCTTGAGGTTCTCATCTCTAACTATGAGATGGGTGCAAGCAAACATTCTGATTCCGCAAGATCAGGAGACATAGAAGACCTCATACACAACTTCCTGATTATAATGTTAGAGCATTCCATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCTATAGTGGGTGGATCAAGCACCGGAGACCAACGGGTTAGGCGTGAGGAATCATTGCCCATATTTAAAAGGAGGCTATTAGGTGGTTTGCTGGACTTCGCAGCTAGAGAACTCCAGGTTCAGACTCAAGTTATTGCTGCAGCATCTGCTAATGTGGCATCAGGGACTTCATCACCAAAAGATGCCAAGGCAGAAGCAGAAAATGTGGCTCAACTTTCTGTAGCACTAGTAGAGAATGCAATAGTGATACTAATGCTTGTTGAGGATCATTTACGGTTACAGTGCAAACTGTCTTCTGTTTCACGTGCAACAGATAGTTCTCCATCTCCCCTTTCTCTTGTATCTCCCCTCAATAACCAGTCAAATTCATCGAATACAGTTGGTGGAGATTCATTTGGGGCTTTGGGTGATCGCAAATCCTTATCTAGTGATTCTGGGGGACTTCCTCTTGATCTTCTTGCTTCAATGGCTGATGCAAATGGTCAAGTATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCGGCTGAGCCTTATGGGTCTGTTTCATGTGCTTTTGTATCATATGGAAGCTGTACTGCAGATCTAGCAATGGGGTGGAAGTATAGGAGCAGATTGTGGTATGGAGTAGGCATTCCTTCAAACACAGCAGCCTTTGGTGGTGGTGGCAGCGGCAGGGAATCTTGGATGGCTGCACTGGAGAAGGATGCAAATGGAAACTGGATTGAGCTTCCTTTGGTGAAAAAGTCTGTTGCAATGCTCCAAGCTTTACTATTAGATGATTCGGGACTTGGTGGTGGACTTGGCATAGGTGGTGGATCTGGTACTGGAATGGGAGGCATGGCAGCACTCTACCAGTTATTGGACAGTGACCAACCATTCTTATGCATGCTCCGAATGACACTTCTTTCGATGAGAGAAGAAGATGATGGTGAAGAGAGCATGCTTATGAGCAATGTAAGCATAGATGATGGGAAATCAGATGGGAGGAAACCACGATCAGCATTGCTGTGGAGTGTGCTTTCACCTGTTCTAAACATGCCAATTTCTGATTCCAAGAGGCAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTATATCATGCTGTTGGCAGGGACGGAAAGCCTTTCCGTAAACTTTACCTTGAGGCCATTGTACCTCCATTTGTTGCTGTTTTGAGGAGGTGGCGGCCAATTTTGGCTGGAATTCATGAACTTGCAACTGCTGATGGTCTGAATCCTCTTATGGTTGAAGACCGTGCATTGGCTGCTGATGCCCTTCCAATAGAGGCTGCTCTTGCAATGATCTCTCCAGCTTGGGCCGCTGCTTTTGCATCACCACCTGCTGCAATGGCACTGGCAATGATAGCTGCTGGTGCCTCTGGTGGAGAAACTCCAGCTCCTCCGACAACTTCTCAACTTAGGCGTGATTCCTCATTGCTTGAGCGGAAAACTAATAAGCTTCACACATTTTCGAGCTTCCAAAAACCTTTAGAGCAACCTGAAAAAGCCCCAGCTCTACCAAAGGATAAGGCCGCTGCAAAAGCTGCTGCCTTGGCTGCAGCACGTGATCTTGAACGTAATAATAAAATCGGTTCTGGAAGGGGCCTTAGTGCTGTGGCAATGGCCACATCTGCACAGCGGAGGAGTGCTGGTGACATGGAGCGTGTGAAGAGATGGAATATTGCTGAAGCAATGGAAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACCAGATCAGTCTATGGAAAAGATTTTAACGCTTTATCGTATAAATTTATTGCTGTTCTTGTGGCAAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGTTCTCAAGTTGATCTAATAACTCGTCATCGTTTGGGCAAAGGAAGTCGTGCATGGCGCAAGCTCATGCATTGCTTGATTGAGATGAAGTGTCTTCTTGGGCCATCTGGAGACCAATTATGCAATCAATCACCTGTTTTCTGGAAGCTAGATTTTATGGAAAGTTCTTCTAGGATGAGACGATGTGTGAGGAGGAATTACGAAGGTTCTGACCATTTTGGTGCTGCTGCCAATTTTGAGGATCCTATTAAGACAAAAGAACAGGAAAATGTCATAAGTTCCTCAAATGCTCCTATTTTGGCAGCAGAAGCAATTGCCGTGGAGGCAGTAAACGAAGATGATGAACAAGTGGAGATTGAAACTATGGATGGTAGACCCTATGGTATAGAAGAGAGTGGGGAGAATCATTCACGACTGTCTGAAACAGCTGAGAAAAGCCTGCTGGCACCTGCTGAATCTGATGACACTCAAGTTGCTGGTGAACCAGGCTTGGTCCAAAGTTCGTCACCAATTGCGGCTGGATATGTTCCTAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTCCTTCGTCAATGGTTCGCCCATTGAGGGTTATAACTGGAACTTTTCAGGTAACAAGTAGAAGAATAAATTTCATAGTTGATAACAGTGATGTGAATGGTTCACTGGATGAACTAGATTGCAAGGAAATGAGAGAAGAACATAAGGATCGTAGCTGGTCTATGTCATCCCTTCATCAAATATACAGCCGAAGATATCTCCTAAGAAGAAGTGCTCTGGAGCTATTTTTGGTTGATCGTTCAAACTTCTTCTTTGATTTTGGGAGTACGGAAGGACGAAGAAACGCATATCGAGCTATTGTTCAAGCACGGCCTCCCCATTTGAATAATATATATCTTGCAACTCAGAGACCTGAACAACTTCTGAAGAGAACACAGCTTATGGAGCGTTGGGCTAGGTGGGAGATCAGCAATTTCGAATATCTAATGCAGCTCAATACCCTTGCGGGGCGTAGTTACAATGACATTACTCAGTATCCTGTTTTCCCATGGATCCTTTCTGATTACAGTTCGAAGACTTTGGATCTCGCAGACCCTTCTTCTTATCGAGACCTTTCAAAGCCTGTTGGTGCTTTGAATTCTGATCGTCTGGAAAAATTTCAAGAGAGATATTCCAGCTTCGAGGACCCAGTTATACCCAAATTCCATTATGGTTCTCATTATTCTAGCGCTGGAACAGTGCTATATTATCTTGTTAGAGTTGAACCGTTTACAACTCTGTCAATTCAACTGCAAGGCGGAAAGTTTGATCATGCAGATAGGATGTTTTCAGATATTGCTTCTACTTGGAATGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCCGAGTTGTTCTACCTCCCTGAGATCTTAACCAATGAAAATTCAATTGATTTTGGTACAACACAAACAGGCGGAAAACTTGGTTCTGTCAAACTTCCACCATGGGCAGAAAACCCATTTGATTTCATTCATAAGCATCGGAAGGCTCTTGAAAGCGAACACGTATCTGCACATTTGCATGAATGGATTGATCTTATATTTGGGTATAAGCAACGTGGTAAAGAAGCTATATTGGCAAATAATGTTTTCTTCTACATTACCTATGAAGGGACTGTTGATATTGATAAGATATCAGACCCAGTACAACAACGTGCAACACAAGACCAGATTGCATACTTTGGTCAAACGCCATCGCAACTTCTTACCATCCCTCACTTGAAGAAGATGCCACTAGCAGATGTTCTTCATTTGCAGACCATCTTCCGGAACCCAAAAGAAGTCAAACAATATGCTGTTCCTGCTCCTGAGCGTTGCAATCTTCCTGCAGCTGGTATTCATGCATCTTCAGATACTGTCGTAATTGTTGATATGCATGCACCAGCAGCACATGTTGCACAGCACAAGTGGCAGCCGAACACACCTGACGGTCAAGGTATGCCTTTCCTCTTTCAACACGGAAAGCCTGCAGCAAGCTCCACTGGTGGAGCATTTATGCGTATGTTCAAAGGGCCTGCTGGATCTGGTTCCGAGGATTGGCTTTTTCCTCAAGCGCTAGCATTTGCTACATCTGGAATCAGAAGCTCGGCTATAGTTTCCATAACATGTGACAAAGAAGTCATCACTGGTGGGCATGTGGACAACAGTATCAAGCTAGTTTCATCAGATGGAGCAAAAACCTTGGAGACAGCCTTTGGCCACTGTGCTCCAGTCACTTGTCTTGGACTTTCACCTGATAGCAACTACCTTGTGACGGGATCCAGAGATACTACTGTTTTACTATGGAGAATACATAGAGCATTTACTTCTCGCTCAAGCAGCGTATCAGAGTCTTCTAGTGGGACACCAGGCACAACCAGCAATAGTAATTTATCACATATATTGGCAGACAAGAGCAGGAGGCGTCGTATTGAAGGCCCCATACATGTTCTTCGAGGCCACCAGAGGGAAATACTTTCCTGCTGTGTGAGCTCAGATCTTGGGATAGTTGTTTCATGCTCCCAATCATCAGATGTGCTCTTGCATTCTATAAGAAGAGGTCGGCTGATTAGAAGGCTGCCTGGTGTGGAGGCCCATGCTGTCTGCCTCTCATCTGAGGGAGTTGTATTGACTTGGAATAAAACACTCAATACTTTGAGTACCTTTACTCTTAATGGATCTCTCATTGCCAGAGCTCAGTTACCGATCTCTGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATAGGAATAAACTCGTCTATAGAAACTGATAGAACCTTCAGCGGCAGCTGGGATTCTAAGCTTAAGAGCACAGAGTTTGAGGATCTTTCACTGGAGTCAGAGGGAACTGAAGAAATCAACAGATTGGACACTCCATCGCCTTCAATTTGCTTCCTGGATATTCACACACTGAAGGTTTTTCATATATTGAAGTTGGGAGAAGGAAGGGAGATCACATCTCTTGCTCTAAACACAGACAATACAAACCTTCTGGTGTCAACTGCAGATAGACAGTTGATAATTTTCACTGATCCAGCTTTGAGCTTGAAAGTGGTGGATCAAATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTAAGTCCCCTAATAAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

2985

Amino Acids

325.44

Weight (kDa)

5.54

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 684 - 990 1.2e-58 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1197 - 1309 1.4e-08 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2122 - 2219 1.8e-26 PH domain associated with Beige/BEACH
Beach PF02138 2247 - 2522 1.3e-121 Beige/BEACH domain
WD40_Prp19 PF24814 2640 - 2800 1.4e-06 Prp19 WD40 domain
NBCH_WD40 PF20426 2644 - 2854 5e-22 Neurobeachin beta propeller domain
Beta-prop_WDR5 PF25175 2644 - 2806 1.2e-10 WDR5 beta-propeller domain
Beta-prop_WDR5 PF25175 2646 - 2714 3e-06 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 2646 - 2711 2.7e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2646 - 2784 1.6e-08 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2646 - 2726 1.1e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 2651 - 2725 4.7e-07 THOC3 beta-propeller domain
WD40 PF00400 2677 - 2709 2.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 3227, 3863, 6389
AarI CACCTGC 2 cut(s) 5299, 6250
AasI GACNNNNNNGTC 1 cut(s) 7958
Acc36I ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
AccB1I GGYRCC 3 cut(s) 2033, 5324, 6238
AccB7I CCANNNNNTGG 2 cut(s) 1113, 4804
AccBSI CCGCTC 1 cut(s) 5395
AccI GTMKAC 2 cut(s) 398, 6166
AccII CGCG 1 cut(s) 2643
AccIII TCCGGA 2 cut(s) 559, 7608
AcoI YGGCCR 4 cut(s) 1238, 5138, 5574, 8038
AcvI CACGTG 2 cut(s) 4244, 5516
AcyI GRCGYC 2 cut(s) 3545, 8245
AdeI CACNNNGTG 1 cut(s) 1058
AfeI AGCGCT 3 cut(s) 3678, 7024, 7896
AflII CTTAAG 1 cut(s) 8642
AflIII ACRYGT 4 cut(s) 7345, 7732, 7946, 8266
AhlI ACTAGT 1 cut(s) 4165
AjiI CACGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 4 cut(s) 2614, 2646, 4978, 5010
Alw26I GTCTC 8 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021
Alw44I GTGCAC 2 cut(s) 1392, 3414
AlwNI CAGNNNCTG 5 cut(s) 182, 1340, 4085, 4469, 7697
Ama87I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
Aor13HI TCCGGA 2 cut(s) 559, 7608
Aor51HI AGCGCT 3 cut(s) 3678, 7024, 7896
ApaLI GTGCAC 2 cut(s) 1392, 3414
ArsI GACNNNNNNTTYG 4 cut(s) 410, 442, 4834, 4866
AseI ATTAAT 1 cut(s) 1127
Asp700I GAANNNNTTC 8 cut(s) 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
AspLEI GCGC 5 cut(s) 3679, 3885, 5853, 7025, 7897
AsuC2I CCSGG 1 cut(s) 1681
AsuII TTCGAA 2 cut(s) 6771, 6866
AsuNHI GCTAGC 3 cut(s) 1897, 3155, 7897
AvaI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
AvaII GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
AxyI CCTNAGG 2 cut(s) 2038, 2316
BaeGI GKGCMC 2 cut(s) 1396, 3418
BaeI ACNNNNGTAYC 6 cut(s) 7686, 7719, 7972, 8005, 8100, 8133
BalI TGGCCA 3 cut(s) 1240, 5576, 8040
BamHI GGATCC 3 cut(s) 6034, 6846, 8099
BanI GGYRCC 3 cut(s) 2033, 5324, 6238
BanII GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
BarI GAAGNNNNNNTAC 8 cut(s) 1510, 1542, 3715, 3747, 3828, 3860, 8247, 8279
BbrPI CACGTG 2 cut(s) 4244, 5516
BceAI ACGGC 5 cut(s) 1218, 1743, 2114, 6095, 6680
BciVI GTATCC 2 cut(s) 46, 6840
BclI TGATCA 2 cut(s) 391, 7102
BcnI CCSGG 1 cut(s) 1681
BcoDI GTCTC 8 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021
BcuI ACTAGT 1 cut(s) 4165
BfoI RGCGCY 3 cut(s) 3680, 7026, 7898
BfrI CTTAAG 1 cut(s) 8642
BfuAI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
BfuI GTATCC 2 cut(s) 46, 6840
BglI GCCNNNNNGGC 2 cut(s) 341, 6116
BglII AGATCT 3 cut(s) 4525, 7209, 8317
BlpI GCTNAGC 2 cut(s) 1997, 4470
Bme18I GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
BmeT110I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
BmgBI CACGTC 1 cut(s) 413
BmrI ACTGGG 5 cut(s) 666, 1983, 2810, 6977, 7478
BmtI GCTAGC 3 cut(s) 1901, 3159, 7901
BmuI ACTGGG 5 cut(s) 666, 1983, 2810, 6977, 7478
Bpu10I CCTNAGC 2 cut(s) 3036, 7650
Bpu1102I GCTNAGC 2 cut(s) 1997, 4470
Bpu14I TTCGAA 2 cut(s) 6771, 6866
BpuMI CCSGG 1 cut(s) 1681
BsaAI YACGTR 3 cut(s) 4244, 5516, 7348
BsaBI GATNNNNATC 1 cut(s) 750
BsaHI GRCGYC 2 cut(s) 3545, 8245
BsaI GGTCTC 5 cut(s) 2930, 3960, 5898, 6697, 6897
BsaWI WCCGGW 3 cut(s) 559, 3962, 7608
Bse118I RCCGGY 1 cut(s) 2691
Bse21I CCTNAGG 2 cut(s) 2038, 2316
Bse8I GATNNNNATC 1 cut(s) 750
BseAI TCCGGA 2 cut(s) 559, 7608
BseJI GATNNNNATC 1 cut(s) 750
BseRI GAGGAG 6 cut(s) 29, 2414, 5143, 5340, 5608, 5998
BseSI GKGCMC 2 cut(s) 1396, 3418
BseYI CCCAGC 2 cut(s) 5461, 8628
BsgI GTGCAG 5 cut(s) 2483, 3948, 4620, 5568, 7338
Bsh1236I CGCG 1 cut(s) 2643
Bsh1285I CGRYCG 1 cut(s) 3641
BshNI GGYRCC 3 cut(s) 2033, 5324, 6238
BsiEI CGRYCG 1 cut(s) 3641
BsiHKCI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
BsiSI CCGG 5 cut(s) 560, 1681, 2692, 3963, 7609
BsmAI GTCTC 8 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021
BsmBI CGTCTC 1 cut(s) 5965
BsmI GAATGC 9 cut(s) 1029, 1048, 1309, 1547, 2716, 3874, 4180, 4575, 8365
Bso31I GGTCTC 5 cut(s) 2930, 3960, 5898, 6697, 6897
BsoBI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
Bsp119I TTCGAA 2 cut(s) 6771, 6866
Bsp13I TCCGGA 2 cut(s) 559, 7608
Bsp1407I TGTACA 2 cut(s) 184, 896
Bsp1720I GCTNAGC 2 cut(s) 1997, 4470
Bsp19I CCATGG 3 cut(s) 1892, 6842, 7286
Bsp68I TCGCGA 1 cut(s) 2643
BspEI TCCGGA 2 cut(s) 559, 7608
BspFNI CGCG 1 cut(s) 2643
BspHI TCATGA 3 cut(s) 64, 2680, 5158
BspMI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
BspOI GCTAGC 3 cut(s) 1901, 3159, 7901
BspT104I TTCGAA 2 cut(s) 6771, 6866
BspT107I GGYRCC 3 cut(s) 2033, 5324, 6238
BspTI CTTAAG 1 cut(s) 8642
BspTNI GGTCTC 5 cut(s) 2930, 3960, 5898, 6697, 6897
BsrBI CCGCTC 1 cut(s) 5395
BsrFI RCCGGY 1 cut(s) 2691
BsrGI TGTACA 2 cut(s) 184, 896
BssAI RCCGGY 1 cut(s) 2691
BssNI GRCGYC 2 cut(s) 3545, 8245
BssT1I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Bst6I CTCTTC 8 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 6716, 8371
BstACI GRCGYC 2 cut(s) 3545, 8245
BstAFI CTTAAG 1 cut(s) 8642
BstAUI TGTACA 2 cut(s) 184, 896
BstBAI YACGTR 3 cut(s) 4244, 5516, 7348
BstBI TTCGAA 2 cut(s) 6771, 6866
BstDSI CCRYGG 5 cut(s) 1424, 1892, 6111, 6842, 7286
BstFNI CGCG 1 cut(s) 2643
BstH2I RGCGCY 3 cut(s) 3680, 7026, 7898
BstHHI GCGC 5 cut(s) 3679, 3885, 5853, 7025, 7897
BstMAI GTCTC 8 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021
BstMCI CGRYCG 1 cut(s) 3641
BstSLI GKGCMC 2 cut(s) 1396, 3418
BstUI CGCG 1 cut(s) 2643
BstXI CCANNNNNNTGG 1 cut(s) 3893
Bsu36I CCTNAGG 2 cut(s) 2038, 2316
BsuI GTATCC 2 cut(s) 46, 6840
BtgI CCRYGG 5 cut(s) 1424, 1892, 6111, 6842, 7286
BtgZI GCGATG 4 cut(s) 926, 2409, 7521, 8700
BtrI CACGTC 1 cut(s) 413
BtsI GCAGTG 4 cut(s) 2226, 2262, 3416, 4443
BtuMI TCGCGA 1 cut(s) 2643
BveI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
CaiI CAGNNNCTG 5 cut(s) 182, 1340, 4085, 4469, 7697
CciI TCATGA 3 cut(s) 64, 2680, 5158
CfoI GCGC 5 cut(s) 3679, 3885, 5853, 7025, 7897
Cfr10I RCCGGY 1 cut(s) 2691
CseI GACGC 3 cut(s) 1865, 3534, 8234
CspCI CAANNNNNGTGG 6 cut(s) 1890, 1925, 2215, 2250, 6093, 6128
DraI TTTAAA 1 cut(s) 4006
DraIII CACNNNGTG 1 cut(s) 1058
DrdI GACNNNNNNGTC 1 cut(s) 7958
DseDI GACNNNNNNGTC 1 cut(s) 7958
EaeI YGGCCR 4 cut(s) 1238, 5138, 5574, 8038
Eam1104I CTCTTC 8 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 6716, 8371
EarI CTCTTC 8 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 6716, 8371
EciI GGCGGA 2 cut(s) 7107, 7272
Ecl136II GAGCTC 3 cut(s) 2894, 8313, 8516
Eco130I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Eco24I GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
Eco31I GGTCTC 5 cut(s) 2930, 3960, 5898, 6697, 6897
Eco32I GATATC 2 cut(s) 6551, 7476
Eco47I GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
Eco47III AGCGCT 3 cut(s) 3678, 7024, 7896
Eco53kI GAGCTC 3 cut(s) 2894, 8313, 8516
Eco72I CACGTG 2 cut(s) 4244, 5516
Eco81I CCTNAGG 2 cut(s) 2038, 2316
Eco88I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
EcoICRI GAGCTC 3 cut(s) 2894, 8313, 8516
EcoO109I RGGNCCY 8 cut(s) 1172, 1787, 2135, 2312, 5554, 6979, 7853, 8258
EcoRI GAATTC 3 cut(s) 356, 5154, 6931
EcoRV GATATC 2 cut(s) 6551, 7476
EcoT14I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
EcoT22I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
EcoT38I GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
ErhI CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Esp3I CGTCTC 1 cut(s) 5965
FauI CCCGC 3 cut(s) 1994, 2965, 6793
FauNDI CATATG 2 cut(s) 3649, 4507
FbaI TGATCA 2 cut(s) 391, 7102
FblI GTMKAC 2 cut(s) 398, 6166
FriOI GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
GlaI GCGC 5 cut(s) 3678, 3884, 5852, 7024, 7896
GsaI CCCAGC 2 cut(s) 5465, 8632
HaeII RGCGCY 3 cut(s) 3680, 7026, 7898
HapII CCGG 5 cut(s) 560, 1681, 2692, 3963, 7609
HgaI GACGC 3 cut(s) 1865, 3534, 8234
HhaI GCGC 5 cut(s) 3679, 3885, 5853, 7025, 7897
Hin1I GRCGYC 2 cut(s) 3545, 8245
Hin6I GCGC 5 cut(s) 3677, 3883, 5851, 7023, 7895
HinP1I GCGC 5 cut(s) 3677, 3883, 5851, 7023, 7895
HincII GTYRAC 5 cut(s) 223, 2815, 3513, 5788, 8838
HindII GTYRAC 5 cut(s) 223, 2815, 3513, 5788, 8838
HindIII AAGCTT 5 cut(s) 2531, 4707, 5408, 8639, 8909
HpaII CCGG 5 cut(s) 560, 1681, 2692, 3963, 7609
Hpy99I CGWCG 6 cut(s) 1366, 1755, 1758, 2055, 3550, 8250
Hsp92I GRCGYC 2 cut(s) 3545, 8245
HspAI GCGC 5 cut(s) 3677, 3883, 5851, 7023, 7895
Kpn2I TCCGGA 2 cut(s) 559, 7608
KroI GCCGGC 1 cut(s) 2691
KroNI GCCGGC 1 cut(s) 2693
Ksp22I TGATCA 2 cut(s) 391, 7102
MbiI CCGCTC 1 cut(s) 5395
MfeI CAATTG 4 cut(s) 1812, 6105, 6303, 7230
MlsI TGGCCA 3 cut(s) 1240, 5576, 8040
MluNI TGGCCA 3 cut(s) 1240, 5576, 8040
MlyI GAGTC 6 cut(s) 1172, 1959, 2576, 4057, 8180, 8684
MmeI TCCRAC 2 cut(s) 5378, 5797
Mox20I TGGCCA 3 cut(s) 1240, 5576, 8040
Mph1103I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
MroI TCCGGA 2 cut(s) 559, 7608
MroNI GCCGGC 1 cut(s) 2691
MroXI GAANNNNTTC 8 cut(s) 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
MscI TGGCCA 3 cut(s) 1240, 5576, 8040
MslI CAYNNNNRTG 8 cut(s) 449, 860, 2600, 4825, 4889, 4951, 6012, 7362
Msp20I TGGCCA 3 cut(s) 1240, 5576, 8040
MspCI CTTAAG 1 cut(s) 8642
MspI CCGG 5 cut(s) 560, 1681, 2692, 3963, 7609
MunI CAATTG 4 cut(s) 1812, 6105, 6303, 7230
Mva1269I GAATGC 9 cut(s) 1029, 1048, 1309, 1547, 2716, 3874, 4180, 4575, 8365
MvnI CGCG 1 cut(s) 2643
NaeI GCCGGC 1 cut(s) 2693
NciI CCSGG 1 cut(s) 1681
NcoI CCATGG 3 cut(s) 1892, 6842, 7286
NdeI CATATG 2 cut(s) 3649, 4507
NgoMIV GCCGGC 1 cut(s) 2691
NheI GCTAGC 3 cut(s) 1897, 3155, 7897
NmeAIII GCCGAG 1 cut(s) 7907
NmuCI GTSAC 9 cut(s) 431, 1830, 2975, 4811, 5603, 6297, 7949, 8053, 8092
NruI TCGCGA 1 cut(s) 2643
NsiI ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
NspV TTCGAA 2 cut(s) 6771, 6866
PaeI GCATGC 5 cut(s) 1547, 2047, 4834, 4888, 7721
PaeR7I CTCGAG 1 cut(s) 777
PagI TCATGA 3 cut(s) 64, 2680, 5158
PaqCI CACCTGC 2 cut(s) 5299, 6250
PciI ACATGT 3 cut(s) 7732, 7946, 8266
PcsI WCGNNNNNNNCGW 2 cut(s) 1756, 3979
PctI GAATGC 9 cut(s) 1029, 1048, 1309, 1547, 2716, 3874, 4180, 4575, 8365
PdiI GCCGGC 1 cut(s) 2693
PdmI GAANNNNTTC 8 cut(s) 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
PflMI CCANNNNNTGG 2 cut(s) 1113, 4804
PfoI TCCNGGA 2 cut(s) 44, 8733
PleI GAGTC 6 cut(s) 1171, 1959, 2575, 4057, 8179, 8683
PmaCI CACGTG 2 cut(s) 4244, 5516
PmlI CACGTG 2 cut(s) 4244, 5516
PpsI GAGTC 6 cut(s) 1171, 1959, 2575, 4057, 8179, 8683
Ppu21I YACGTR 3 cut(s) 4244, 5516, 7348
PpuMI RGGWCCY 3 cut(s) 1172, 2135, 6979
PscI ACATGT 3 cut(s) 7732, 7946, 8266
PshBI ATTAAT 1 cut(s) 1127
PsiI TTATAA 3 cut(s) 3227, 3863, 6389
Psp124BI GAGCTC 3 cut(s) 2896, 8315, 8518
Psp5II RGGWCCY 3 cut(s) 1172, 2135, 6979
PspCI CACGTG 2 cut(s) 4244, 5516
PspFI CCCAGC 2 cut(s) 5461, 8628
PspPPI RGGWCCY 3 cut(s) 1172, 2135, 6979
PstNI CAGNNNCTG 5 cut(s) 182, 1340, 4085, 4469, 7697
PvuII CAGCTG 4 cut(s) 1337, 6221, 7673, 8628
RruI TCGCGA 1 cut(s) 2643
RseI CAYNNNNRTG 8 cut(s) 449, 860, 2600, 4825, 4889, 4951, 6012, 7362
SacI GAGCTC 3 cut(s) 2896, 8315, 8518
SchI GAGTC 6 cut(s) 1172, 1959, 2576, 4057, 8180, 8684
Sfr274I CTCGAG 1 cut(s) 777
SfuI TTCGAA 2 cut(s) 6771, 6866
SinI GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
SlaI CTCGAG 1 cut(s) 777
SmiMI CAYNNNNRTG 8 cut(s) 449, 860, 2600, 4825, 4889, 4951, 6012, 7362
SpeI ACTAGT 1 cut(s) 4165
SphI GCATGC 5 cut(s) 1547, 2047, 4834, 4888, 7721
SspI AATATT 5 cut(s) 40, 628, 885, 3292, 5632
SstI GAGCTC 3 cut(s) 2896, 8315, 8518
StyI CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
TaqII GACCGA 1 cut(s) 273
TatI WGTACW 7 cut(s) 184, 896, 1181, 2474, 3218, 4517, 7486
TauI GCSGC 9 cut(s) 1385, 1558, 4469, 4617, 5140, 5273, 5486, 6311, 8625
TseFI GTSAC 9 cut(s) 431, 1830, 2975, 4811, 5603, 6297, 7949, 8053, 8092
Tsp45I GTSAC 9 cut(s) 431, 1830, 2975, 4811, 5603, 6297, 7949, 8053, 8092
TspGWI ACGGA 7 cut(s) 166, 1004, 2404, 5069, 5082, 6638, 7815
Van91I CCANNNNNTGG 2 cut(s) 1113, 4804
Vha464I CTTAAG 1 cut(s) 8642
VneI GTGCAC 2 cut(s) 1392, 3414
VpaK11BI GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
VspI ATTAAT 1 cut(s) 1127
XbaI TCTAGA 1 cut(s) 1579
XcmI CCANNNNNNNNNTGG 1 cut(s) 3146
XhoI CTCGAG 1 cut(s) 777
XmiI GTMKAC 2 cut(s) 398, 6166
XmnI GAANNNNTTC 8 cut(s) 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
Zsp2I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.