MD02G1199600.v1.1

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0008085
Physical Location & Seq
Forward (+)
19627048 .. 19649980
22933 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1199600.v1.1.491

Sequence Viewer

Length: 8910 bp
ATGGAAGAAGAAGAGGAGAGGAAGAAGGAGGTTGAAACGATTTCCAGCAAGGATTCAGATAATCATGAGGTGGTGAATGGTGTACAGGAAAAAATTGATCCATCACATCAGGAAACTATTAATAATGCTGATAGTGATGTAGCTGATGTGAAACAAAATAGCATAACCTCGCAAGTGGTCGATTCTGTCACTACAGTAGTGGATGAAGATCATTTTGAGCAGGTTTCTTTGAAAGATCAGGATAAGATTGGTGCATCTCAAGGTGTTCACGTGGACTCTAATCAATCATCAGTTTCAGATATTGCTAGACTATCATCTGGTCAGTTTGAAGATGCCTCACAGTCATTTACAGCAGAATTGAATTCTTCTGTAGGTGATGAAATGCGATCTGATCAGTCTTCCTGGAGCCCAGTGAAGGACAGAAAATTTAGTCACAAGCCATCTATGTCATCTTCTAGTTTTGATTCTGCTTTTTATGGGGATGCAGGTTATTCTCCTGCTGGTTCACCTCCAAAACCAAGGCCAAAACCTGCTATGCCAAATGTATCTCCGGAGTTATTGCATTTAGTGGATTCTGCCATCATGGGGAAGCCTGAAAGTTTGGATAAACTGAAAAATATTGTTAGTGGTGTAGAGAGTTTTGGAAGTGGGGAGGAAATGGATGGCATTGCATACTTGGTGGTTGATTCACTTATTGCGACAATGGGCGGCGTTGAAAGTTTTGAAGAAGATGAGGATAACAATCCTCCTAGCGTGATGCTGAACTCTCGGGCTGCCATTGTCTCAGGTGAGCTTATTCCTTCGCTTCCTTGGGTTGGTGATAGTGATGTTATTATGTCCCCTCGGACACGGATGGTCAGGGGGTTACTTGCAATTTTAAGGGCTTGTACAAGAAACAGAGCCATGTGTTCAATGGCTGGTTTATTAGGAGTTCTCTTGAGGTCAGCAGAGAAGATATTTGTTCACGATGTTGATTCTCCGCTGCAAATGAGATGGGATGGAACTCCCTTATGTTATTGCATTCAGTACTTAGCAGGACATTCACTCAGTGTTATTGATTTGCACAAATGGTTTCAAGTCATTACCAGAACACTTACCACTGTATGGGCAACCCGTTTAATGATTGCACTGGAGAAGGCAATGGGTGGAAAGGAGTCGAGAGGCCCAGCATGTACTTTTGAGTTTGATGGTGAAAGTTCGGGTTTGCTTGGTCCGGGGGAGAGCCGTTGGCCTTTTACCAATGGGTATGCGTTTTCAACGTGGATTTACATTGAATCATTTGCAGATACATTAAATGCAGCAACCGCTGCTGCAGCAATTGCTGCTGCTGCCGCTGCCAAGTCGGGAAAATCGTCTGCCATGTCAGCTGCTGCTGCTGCCAGTGCCCTTGCGGGTGAAGGCACGGCACACATGCCACGACTGTTCAGTTTCTTATCTGCTGACAATCAGGGGTTTGAGGCATATTTCCATGCACAGTTTTTGGTGGTTGAAAGTGCGAGTGGAAAGGGTAAGAAGACTTCTTTACACTTTACGCATGCATTCAAGCCGCAGTGCTGGTACTTTATTGGTTTAGAGCATACTTGCAAGCAGGGGATGCTTGGTAAAGCAGAGAGTGAATTAAGATTATATATTGATGGATCGTTGTACGAAACTCGACCTTTTGAGTTCCCTCGGATCTCTAAGCCGCTTGCGTTTTGCTGCATTGGGACAAACCCTCCTCCTACAATGGCTGGTTTACAACGTCGACGCCGGCAATGCCCTTTGTTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGCCCAGAAAAGATGTCACGTTTGGCTTCTAGGGGAGGAGATGTGCTTCCTTCTTTTGGTCATGGGGCAGGGCTGCCATGGCTAGCAACAAATGTGCATGTGCAAAATATGACAGAAGAAAGTACATTATTGGATGCAGAGATAGGAGGATGCATTCACCTTCTCTATCACCCCAGTTTGCTGAGCGGGCGATTTTGTCCAGATGCTTCCCCTAGTGGTGCAGCAGGCATGCTTCGACGACCAGCTGAGGTTCTTGGGCAGGTACATATTGCTACTCGAATGCGACCAATGGCAGCTTTGTGGGCCTTTGCCTATGGGGGTCCTATGTCCTTACTTCCACTGACAGTTAGTAATGTGGATAAAGATAGCCTGGAGCCACAACAAGGAAATCCTCATTTGTCTTTGGCTACCACAGCTCTCGCTGCTCCAATATTCCGAACTATTTGCTTGGCTATCCAACACCCTAGTAACAATGAAGAGTTCTGTCGTACCAGAGGGCCAGAGGTTCTATCAAGAATCTTAAACTATCTATTACAAACTTTGTCTTCACTTCATGCTGGAGAGGAAAATGGTGTGGGAAATGAGGAACTTGTTGCTGCCATATTATCCTTGTGTCAATCCCAGGAGAAGAATTATGCACTTAAGGTGCAGCTTTTCAGTACATTGCTTTTGGACCTAAAAATTTGGAGCTTATGCAACTATGGGCTACAAAAGAAGCTTCTTTCATCACTTGCAGACATGGTTTTCACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTAGACAGTTGCAGAAGATGTTACTGGACAATTCGTGAAAAGGATTCAGTGAATACCTTTTCTCTTTCACATAATGAGACCAGACGTCCTGTGGGTGAAGTGAATGCTTTGGTTGATGAACTCTTGGTCATTATTGAACTCCTAGTAGGAGCAGCACCCCCTTCATTGGCTTCAGAGGACGTTCGTTGTTTACTGGGGTTCATGGTTGACTGCCCACAGCCTAATCAGGTTGCAAGGGTATTGCATCTGATTTACAGGTTAGTGGTACAGCCAAATAAATCAAGAGCACAAACGTTTGCAGAGGCGTTCATAGATTCTGGTGGTATAGAGACTCTTCTAGTTTTGCTGCAACGAGAAGCCAAAGCTGGTGACTATACTATTCCAGAATCCATGACCAAGGATGACGAGATTTTGTTTGTACAGGGACCCGAGCCAGTTAGTAACACTGATGCTTATGAACAAGTTCAGGATGATGAATCATCAGAGGGAAATGACCTCAATTTGCATGAGAAAATTGGTGAATCTACCCCTAACAGAGGTAGCAGTCCTCTTGCAGTTTCCCCTGATTTGAAAATTGGAAGAACGACTTCTGCTGCAGAAAGTACTTTTACAAAGAATCTGGGTGGTATAGCTCTATCCATCAGTGCTGACAATGCAAGGAATAATGTTTACAATATCGACAAAAGTGATGGGGTGCTTGTGGGCATCATTGGGCTCTTAGGTGCTTTAGTTGCATCAGGGTATTTGAAATTTGGTTCACGAGCATCGTCGGATATGGCAAACACTCTTCTAGGTAGTGCACTGAATGATGGAGGTGGTACCATGTTTGAAGATAAAGTGTCTTTGTTACTTTTTGCTTTACAGAAGGCTTTCCAAGCAGCGCCAAACAGGCTTTTGACCAGCAATGTATATACAACATTGTTGGGGGCGTCGATCAATGCCTCTTCAAGTGATGACGGAATGAACTTCTACGATTCTGGTCATCAATTTGAACATATGCAACTTCTTTTGGTTCTCCTGCGTTCACTTCCATATGCATCCAAGGCTTTGCAAAGCCGAGCGCTACAGGATCTTCTGTTTTTGGCTTGCAGTCATTCAGAAAATAGAAGTAGTCTGACACAAATGGAGGAATGGCCTGAATGGATTCTTGAGATTCTTATCTCTAACTATGAGATGGGTGCAAGCAAACATTCTGATTCTGCCAGCTCAGGAGATATAGAGGACCTTATACACAATTTCCTGAGTATCATGTTAGAGCATTCAATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCCATTGTGGGTGGCTCGAGCACTGGAGACCAACGAGTTAGACGTGAAGAATCGTTGCCCATATTTAAAAGGAGGCTTTTAAGTGGTTTGTTGGACTTTGCAGCTAGAGAGCTCCAGCTTCAGACTCAAGTTATTGCTGCAGCATCTGCTAATGTGGCAGCGGAGGGTTTATCACCAAGCGATGCTAAGGCAGAAGCAGAGAATGCTGCTCAGCTTTCTGTTGCTTTGGTAGAGAATGCAATTGTGATACTAATGCTTGTCGAGGATCATTTACGGTTGCAGAGCAAACTATCCTGTGCTTCACGTGCACCAGATAGTTCTCCATCTCCCCTTTCCCTTGTCTCTCCAATGAATAACCACTCAAATTCGCTGAGTACAGTTGTGGAAGATTCCATTGGAGCTTCGGGTGAACGCAAGTCATTATCTAATGATTCTGGACTTCCTCTTGATCTTCTTGCGTCGATGGCTGATGCGAATGGTCAAATATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCAGCTGAGCCTTATGGATCTGTTTCCTGTGCTTTTGTATCATATGGAAGCTGTGTTATGGATTTAGCTGTGGGGTGGAAGTATAGGAGCAGATTGTGGTATGGTGTTGGTCATCCATCAAATACAGAAGCCTTTGGTGGTGGTGGCAGTGGTCGGGAATCTTGGATGTCTGCACTGGAGAAGGATGCAAATGGAAACTGGATTGAGCTTCCTTTGGTAAAAAAGTCTGTGGCAATGCTCCAAGCATTATTATTAGATGATTCGGGACTTGGTGGAGGACTTGGCATAGGAGGTGGATCTGGTACTGGAATGGGAGGGATGGCAGCACTCTACCAGTTATTGGACAGTGACCAACCATTCTTATGCATGCTCCGAATGGCTCTTCTTTCAATGAGGGAAGAAGATGATGGTGAAGACAATCTGCTTATGAGGAATGTAAGTATAGATGATGTGAAATCAGAAGGGAGGCAACCACGCTCAGCATTGTTGTGGAGTGTGCTTTCACCTGTTCTGAACATGGCGATTTCTGATTCCAAGAGACAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTGTATCATGCTGTTGGCAGGGATAGAAAACCTCTCCGTAAAAAGTACCTTGAAGCCATTGTACCACCATTTGTTGCTGTTTTGAGGAGGTGGCGGCCACTTTTGGCTGGCATTCACGAACTAGCAACTGCTGATGGTTTCAACCCTCTTACAGTTGAAGATCGTGCATTGGCTGCTGATGCCCTGCCAATAGAGGCTGCTCTCGCTCTGATATCTCCAGCTTGGGCTGCTGCTTTTGCATCACCGCCTGCTGCAATGGCACTGGCGATGATAGCTGCTGGTGCCTCTGGTGGAGAAACTCCAGCTCCTACAACAACTTCTCATCTTAGGCGTGACTCCTCATTGCTCGAGCGGAAAACTACTAAGCTTCACACATTTTCAAGTTTTCAAAAACCTTTGGAGCTGCCTAACAAATTACCAGCTCTACCCAAGGACAAAGCTGCTGCAAAAGCTGCTGCCTTGGCTGCAGCTCGTGATCTTGAACGTAATGCCAAAATTGGTTCTGGGAGGGGTCTCAGTGCTGTAGCAATGGCCACATCTGCACAGCGGAGAAGTGCTAGTGACATGGAGCGGGTGAAGAGATGGAATGTTTCTGAAGCAATGGGAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACGAAATCTGTCTACGGAAAAGATTTTAATGCTTTATCGTATACGTTTATTGCTGTACTTGTTGCAAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGCTCTCAAGTTGATCTTATTAGTCGTCATCGTTTGGGCAATGGAGTTCGTGCATGGCGCAAACTCATACATTGCTTGATTGAGATGAAGTGTCTTTTCGGGCCATCTGGAGATCAGTTATGCAAGCCTGCACCTGTTTTTTGGAAGCTAGATTTTATGGAAAGTTCAACTAGGATGAGACGATGTGTAAGGAGGAATTACAAAGGTTCTGATCATTTTGGTGCTGCTGCCAATTTCGAGGATCATAATAAGATGAAAGAACGAGAAAATGGCATACATTCCTCAAATGCTCCTATTCTGGCAGCAGAAGCAATAGCTGTGGAAGCTGTCAATGAAGATGATGAACAGGGGGAAATTGATAATTTGGATGGCAGAACCCCTAGTGAAGAACAAAGTGGGGAGAATCAGCCACATCTGTCTGAAACAGCCGAGCAAAGCCTGCAGTCAACTATGGAATTTGGCGATGCACAAGTTTCTTGTGAACCAGACTTGGGAGAAAGTTCATCAGCAGTGGCGCCTGGATATGTTCCAAGTGAGCTTGATGAAAGAATTGTTCTTGAGCTTCCTTCATCGATGGTTCGACCATTGAGGGTCATACGCGGAACTTTCCAGGTGACAAGTAGGAGAATAAATTTTATAGTTGATAACAGTGAGGCCAATGGTGCAGTGGATGGATCAGATTGCACCGAAATGAAAGACCAAGAAAAGGATCGCAGTTGGACAATGTCTTCCCTTCATCAAATATATAGCCGAAGATATCTTCTTAGACGAAGTGCTCTGGAGCTGTTTATGGTTGATCGTTCGAATTTCTTCTTTGATTTTGGGAGTACTGATGGACGAAGAAATGCATATCGAGCCATTGTTCAAGCACGACCTCCTCATTTGAATAACATTTATCTGGCAACTCAGAGACCCGAGCAACTTCTAAAGAGAACACAACTTATGGAGCGTTGGGCGAGGTGGGAGATCAGCAATTTCGAATATCTAATGCAGCTCAATACACTGGCTGGGCGTAGTTATAATGACATCACGCAGTATCCTGTTTTCCCTTGGATCCTTTCTGATTACAGTTCAAAGAGATTGGATCTTGCTGACCCTTCTTCCTATCGAGATCTTTCAAAGCCGGTTGGTGCATTAAATGCTGATCGTCTGGAAAAGTTTCATGAGAGGTATTCCAGCTTTGAGGATCCAGTCATACCGAAGTTCCATTATGGTTCTCATTATTCCAGTGCTGGAACAGTTCTATATTACCTTGTTAGAGTTGAACCTTTTACAACTCTTTCAATTCAACTGCAAGGCGGAAAATTCGATCATGCAGATCGAATGTTTTCAGATATTGCAGCTACTTGGAATGGAGTCACTGAGGACATGAGCGATGTGAAGGAATTGGTTCCTGAGTTATTCTACCTCCCGGAGATGTTAACCAATGAAAATTCAATCGATTTTGGTATAACACAAACAGGTGGACTACTCGATTCTGTAAAAATTCCACCTTGGGCTGAAAACCCAATTGATTTCATCCATAAGCATCGGAAGGCTCTAGAAAGTGAGCATGTATCTGCGCATTTGCATGAATGGATTGATCTCATATTCGGGTATAAGCAGCGGGGCAAAGAAGCTATAATAGCAAATAATGTTTTCTTTTACATTACCTATGAAGGGACGGTGGATATTGATAAGATCTTAGACCCAGTACAACAGCGTGCAACACAGGACCAGATTGCATACTTTGGGCAAACACCATCCCAGCTGCTTACCATCCCTCACTTGAAGAGGTTGCCATTAGCAGATGTTCTTCATTTACAGACCATCTTCCGGAACCCAAAAGAAGTCAAACCATATGCTGTTTCTGCTCCTGAGCGCTGCAATCTTCCTGCAGCCGCCATTCATGCTTCTTCAGATGCCATCATTATTGCTAATGTAAATGCACCAGCAGCAAATGTTGCAGAACATAAGTGGCAGCCAAACACTCCAGATGGCCAGGGTATGCCTTTCCTCTTTCAACATGGAAAGGCTACAGCAGGCTCAACTGGTGGAACATTTATCCGTATGTTCAAAGGACCAGCTGGATCTAGTTCTGATGAATGGCAATTTCCACAGGCGCTAGCATTTGCTGCATCTGGAATTACAAGCTCAGCTATAGTTGCCATAACATGTGATAAAGAAATAATCACTGGTGGGCATGTGGATAATAGTATTAAGCTAATATCATCAGATGGAGCAAAAACCTTAGAGACAGCTTTTGGGCATTGTGCTCCAGTCACTTACCTTGGGCTCTCACCTGATAGCAACTACCTTGTGACGGGATCCCGAGACACCACTGTATTACTTTGGAGAATACATAGGGCATCTACTTCTCGCTCTAGTAGTATATCAGAGCCTTCTGGTGGGACAGGTACACCGGGCACAGTCAACGGTAATAATTTATCACACATATTGGCAGACAAAAGCAGGAGGCGTCGTATTGAAGGTCCCATACACGTTCTTCGCGGCCACCAGAGGGAAATACTTTGTTGTTGTGTGAGCTCAGATCTTGGGATTGTTGTTTCATGCTCACAATCATCAGATGTTCTCTTGCATTCGACAAGAAGAGGTCGGTTGATTAGAAGGCTGCCTGGTGGGGAGGCCCATGCTGTCTGCCTATCATCTGAGGGAATCGTATTGACTTGGAATAAGACGCTCAATACTCTTAATACCTTTACTCTTAATGGGGTTCCAATTGGCAGAGCTCAACTACCTTTCTCTGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATTGGAATAAACACGTCTTTGGAAAACAACGGCTGGGATTTGAAACTGAAGAACACAGAGTTTGAGGATCAGAATTCAGATAAAGCTGAGGAATTGGACGTCCCGTCGCCTTCAATTTGTTTCCTGGATCTTCATACACTAAAGGTTTTTCATGTATTAAAGTTGGGACTCGGACAGGATATCACATCTCTAGCGCTGAACACGGATAATACCAACCTTTTGGTGTCAACTGTCGATAAACAGTTGATAATTTTCACTGATCCGGCTTTGAGCTTGAAAGTAGTGGATCACATGCTCAAGCTCGGTTGGGAAGGCGGTGGACTGAGCCCCCTCATCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

2970

Amino Acids

323.81

Weight (kDa)

5.52

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 680 - 987 1.4e-61 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1191 - 1303 2.3e-10 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2115 - 2212 1.2e-27 PH domain associated with Beige/BEACH
Beach PF02138 2240 - 2516 1.5e-119 Beige/BEACH domain
NBCH_WD40 PF20426 2637 - 2849 1.2e-20 Neurobeachin beta propeller domain
Beta-prop_WDR5 PF25175 2637 - 2800 5.6e-11 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 2638 - 2705 8.9e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2639 - 2779 3.9e-07 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2639 - 2715 1.4e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 6792
AatII GACGTC 2 cut(s) 2686, 8667
Acc16I TGCGCA 1 cut(s) 7335
Acc36I ACCTGC 4 cut(s) 211, 476, 538, 2056
Acc65I GGTACC 1 cut(s) 3416
AccB1I GGYRCC 3 cut(s) 3416, 5303, 6286
AccB7I CCANNNNNTGG 2 cut(s) 1104, 4783
AccBSI CCGCTC 3 cut(s) 1992, 5374, 5593
AccI GTMKAC 3 cut(s) 1744, 5673, 5702
AccII CGCG 2 cut(s) 6372, 8262
AccIII TCCGGA 2 cut(s) 550, 7587
AclI AACGTT 1 cut(s) 2891
AcoI YGGCCR 4 cut(s) 5117, 5553, 7750, 8263
AcuI CTGAAG 5 cut(s) 2754, 4025, 5637, 7653, 8633
AcvI CACGTG 2 cut(s) 271, 4226
AcyI GRCGYC 6 cut(s) 1747, 2683, 3527, 6287, 8230, 8664
AdeI CACNNNGTG 1 cut(s) 1049
AfeI AGCGCT 3 cut(s) 3660, 7634, 8760
AflII CTTAAG 1 cut(s) 2447
AflIII ACRYGT 3 cut(s) 7925, 8251, 8577
AhdI GACNNNNNGTC 2 cut(s) 2682, 8668
AjiI CACGTC 2 cut(s) 3965, 8580
AjnI CCWGG 9 cut(s) 401, 2175, 2427, 5633, 6289, 6381, 7752, 8386, 8688
AjuI GAANNNNNNNTTGG 2 cut(s) 4299, 4331
Alw21I GWGCWC 9 cut(s) 2887, 3400, 3944, 4035, 4231, 6550, 8029, 8300, 8503
Alw44I GTGCAC 2 cut(s) 3396, 4227
AlwNI CAGNNNCTG 3 cut(s) 1370, 4067, 4448
Ama87I CYCGRG 6 cut(s) 768, 3026, 3937, 5369, 6686, 8082
Aor13HI TCCGGA 2 cut(s) 550, 7587
Aor51HI AGCGCT 3 cut(s) 3660, 7634, 8760
ApaLI GTGCAC 2 cut(s) 3396, 4227
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 8 cut(s) 3060, 3184, 3467, 3741, 6581, 6930, 7099, 7161
Asp718I GGTACC 1 cut(s) 3416
AspLEI GCGC 9 cut(s) 3481, 3661, 3867, 5832, 6289, 7336, 7635, 7876, 8761
AsuC2I CCSGG 3 cut(s) 1215, 7184, 8175
AsuII TTCGAA 2 cut(s) 6575, 6750
AsuNHI GCTAGC 2 cut(s) 1888, 7876
AvaI CYCGRG 6 cut(s) 768, 3026, 3937, 5369, 6686, 8082
AvaII GGWCC 8 cut(s) 1211, 2126, 2479, 3023, 3820, 7486, 7832, 8243
BaeGI GKGCMC 4 cut(s) 1387, 3400, 4231, 8180
BalI TGGCCA 2 cut(s) 5555, 7752
BamHI GGATCC 3 cut(s) 6825, 6958, 8078
BanI GGYRCC 3 cut(s) 3416, 5303, 6286
BanII GRGCYC 7 cut(s) 410, 3315, 4035, 8049, 8300, 8503, 8894
BarI GAAGNNNNNNTAC 6 cut(s) 1501, 1533, 5067, 5099, 8232, 8264
BauI CACGAG 2 cut(s) 3357, 5493
BbrPI CACGTG 2 cut(s) 271, 4226
BbsI GAAGAC 5 cut(s) 390, 1520, 2343, 4863, 6492
Bbv12I GWGCWC 9 cut(s) 2887, 3400, 3944, 4035, 4231, 6550, 8029, 8300, 8503
BbvCI CCTCAGC 2 cut(s) 2052, 8652
BceAI ACGGC 3 cut(s) 1209, 1419, 8611
BcgI CGANNNNNNTGC 2 cut(s) 2232, 2266
BciT130I CCWGG 9 cut(s) 403, 2177, 2429, 5635, 6291, 6383, 7754, 8388, 8690
BciVI GTATCC 1 cut(s) 6819
BclI TGATCA 2 cut(s) 391, 5983
BcnI CCSGG 3 cut(s) 1215, 7184, 8175
BfoI RGCGCY 6 cut(s) 3482, 3662, 6290, 7636, 7877, 8762
BfrI CTTAAG 1 cut(s) 2447
BfuAI ACCTGC 4 cut(s) 211, 476, 538, 2056
BfuI GTATCC 1 cut(s) 6819
BglI GCCNNNNNGGC 1 cut(s) 3487
BglII AGATCT 3 cut(s) 6883, 7452, 8302
BlpI GCTNAGC 5 cut(s) 1988, 4131, 4449, 4921, 7906
BmcAI AGTACT 3 cut(s) 1028, 3202, 6601
Bme18I GGWCC 8 cut(s) 1211, 2126, 2479, 3023, 3820, 7486, 7832, 8243
BmeRI GACNNNNNGTC 2 cut(s) 2682, 8668
BmeT110I CYCGRG 6 cut(s) 768, 3026, 3937, 5369, 6686, 8082
BmgBI CACGTC 2 cut(s) 3965, 8580
BmrI ACTGGG 4 cut(s) 404, 1974, 2801, 7457
BmtI GCTAGC 2 cut(s) 1892, 7880
BmuI ACTGGG 4 cut(s) 404, 1974, 2801, 7457
BpiI GAAGAC 5 cut(s) 390, 1520, 2343, 4863, 6492
Bpu10I CCTNAGC 5 cut(s) 2052, 3805, 4107, 7629, 8652
Bpu1102I GCTNAGC 5 cut(s) 1988, 4131, 4449, 4921, 7906
Bpu14I TTCGAA 2 cut(s) 6575, 6750
BpuEI CTTGAG 7 cut(s) 243, 958, 3767, 4032, 5763, 6350, 8846
BpuMI CCSGG 3 cut(s) 1215, 7184, 8175
Bsa29I ATCGAT 2 cut(s) 6344, 7212
BsaAI YACGTR 2 cut(s) 271, 4226
BsaBI GATNNNNATC 3 cut(s) 207, 741, 3755
BsaHI GRCGYC 6 cut(s) 1747, 2683, 3527, 6287, 8230, 8664
BsaI GGTCTC 4 cut(s) 2669, 3942, 5540, 6676
BsaWI WCCGGW 2 cut(s) 550, 7587
BsaXI ACNNNNNCTCC 8 cut(s) 1699, 1729, 1833, 1863, 5311, 5341, 8218, 8248
Bse118I RCCGGY 2 cut(s) 1749, 6895
Bse8I GATNNNNATC 3 cut(s) 207, 741, 3755
BseAI TCCGGA 2 cut(s) 550, 7587
BseBI CCWGG 9 cut(s) 403, 2177, 2429, 5635, 6291, 6383, 7754, 8388, 8690
BseCI ATCGAT 2 cut(s) 6344, 7212
BseJI GATNNNNATC 3 cut(s) 207, 741, 3755
BseRI GAGGAG 6 cut(s) 29, 1707, 1857, 5122, 5350, 6639
BseSI GKGCMC 4 cut(s) 1387, 3400, 4231, 8180
BseYI CCCAGC 4 cut(s) 1165, 6779, 7518, 8598
BsgI GTGCAG 7 cut(s) 2046, 2474, 3930, 4599, 5547, 5886, 6456
Bsh1236I CGCG 2 cut(s) 6372, 8262
BshNI GGYRCC 3 cut(s) 3416, 5303, 6286
BshVI ATCGAT 2 cut(s) 6344, 7212
BsiHKAI GWGCWC 9 cut(s) 2887, 3400, 3944, 4035, 4231, 6550, 8029, 8300, 8503
BsiHKCI CYCGRG 6 cut(s) 768, 3026, 3937, 5369, 6686, 8082
BsiSI CCGG 8 cut(s) 551, 1214, 1750, 6896, 7184, 7588, 8174, 8828
BslFI GGGAC 9 cut(s) 823, 1720, 3036, 4722, 7447, 8176, 8229, 8651, 8745
BsmBI CGTCTC 1 cut(s) 5944
BsmFI GGGAC 9 cut(s) 823, 1720, 3036, 4722, 7447, 8176, 8229, 8651, 8745
Bso31I GGTCTC 4 cut(s) 2669, 3942, 5540, 6676
BsoBI CYCGRG 6 cut(s) 768, 3026, 3937, 5369, 6686, 8082
Bsp119I TTCGAA 2 cut(s) 6575, 6750
Bsp13I TCCGGA 2 cut(s) 550, 7587
Bsp1407I TGTACA 3 cut(s) 82, 887, 3016
Bsp1720I GCTNAGC 5 cut(s) 1988, 4131, 4449, 4921, 7906
Bsp19I CCATGG 1 cut(s) 1883
BspDI ATCGAT 2 cut(s) 6344, 7212
BspEI TCCGGA 2 cut(s) 550, 7587
BspFNI CGCG 2 cut(s) 6372, 8262
BspHI TCATGA 2 cut(s) 64, 6934
BspMAI CTGCAG 8 cut(s) 1315, 3196, 4063, 4414, 4441, 5491, 6216, 7651
BspMI ACCTGC 4 cut(s) 211, 476, 538, 2056
BspOI GCTAGC 2 cut(s) 1892, 7880
BspQI GCTCTTC 1 cut(s) 4830
BspT104I TTCGAA 2 cut(s) 6575, 6750
BspT107I GGYRCC 3 cut(s) 3416, 5303, 6286
BspTI CTTAAG 1 cut(s) 2447
BspTNI GGTCTC 4 cut(s) 2669, 3942, 5540, 6676
BsrBI CCGCTC 3 cut(s) 1992, 5374, 5593
BsrFI RCCGGY 2 cut(s) 1749, 6895
BsrGI TGTACA 3 cut(s) 82, 887, 3016
BssAI RCCGGY 2 cut(s) 1749, 6895
BssNAI GTATAC 1 cut(s) 5703
BssNI GRCGYC 6 cut(s) 1747, 2683, 3527, 6287, 8230, 8664
BssSI CACGAG 2 cut(s) 3357, 5493
Bst1107I GTATAC 1 cut(s) 5703
Bst2BI CACGAG 2 cut(s) 3357, 5493
Bst2UI CCWGG 9 cut(s) 403, 2177, 2429, 5635, 6291, 6383, 7754, 8388, 8690
Bst6I CTCTTC 9 cut(s) 6, 2277, 2937, 3390, 3547, 4830, 5594, 7538, 8356
BstACI GRCGYC 6 cut(s) 1747, 2683, 3527, 6287, 8230, 8664
BstAFI CTTAAG 1 cut(s) 2447
BstAUI TGTACA 3 cut(s) 82, 887, 3016
BstBAI YACGTR 2 cut(s) 271, 4226
BstBI TTCGAA 2 cut(s) 6575, 6750
BstDSI CCRYGG 1 cut(s) 1883
BstENI CCTNNNNNAGG 1 cut(s) 3132
BstFNI CGCG 2 cut(s) 6372, 8262
BstH2I RGCGCY 6 cut(s) 3482, 3662, 6290, 7636, 7877, 8762
BstHHI GCGC 9 cut(s) 3481, 3661, 3867, 5832, 6289, 7336, 7635, 7876, 8761
BstNI CCWGG 9 cut(s) 403, 2177, 2429, 5635, 6291, 6383, 7754, 8388, 8690
BstSLI GKGCMC 4 cut(s) 1387, 3400, 4231, 8180
BstUI CGCG 2 cut(s) 6372, 8262
BstV2I GAAGAC 5 cut(s) 390, 1520, 2343, 4863, 6492
BstXI CCANNNNNNTGG 2 cut(s) 3875, 8785
BstZ17I GTATAC 1 cut(s) 5703
Bsu15I ATCGAT 2 cut(s) 6344, 7212
BsuI GTATCC 1 cut(s) 6819
BsuTUI ATCGAT 2 cut(s) 6344, 7212
BtgI CCRYGG 1 cut(s) 1883
BtgZI GCGATG 4 cut(s) 4116, 5303, 6249, 7161
BtrI CACGTC 2 cut(s) 3965, 8580
BtsI GCAGTG 5 cut(s) 1556, 4422, 4597, 6288, 6444
BveI ACCTGC 4 cut(s) 211, 476, 538, 2056
CaiI CAGNNNCTG 3 cut(s) 1370, 4067, 4448
CciI TCATGA 2 cut(s) 64, 6934
CfoI GCGC 9 cut(s) 3481, 3661, 3867, 5832, 6289, 7336, 7635, 7876, 8761
Cfr10I RCCGGY 2 cut(s) 1749, 6895
ClaI ATCGAT 2 cut(s) 6344, 7212
CseI GACGC 6 cut(s) 1755, 3516, 4368, 5781, 8219, 8458
CspCI CAANNNNNGTGG 2 cut(s) 6072, 6107
DinI GGCGCC 1 cut(s) 6288
DraI TTTAAA 1 cut(s) 3988
DraIII CACNNNGTG 1 cut(s) 1049
DriI GACNNNNNGTC 2 cut(s) 2682, 8668
EaeI YGGCCR 4 cut(s) 5117, 5553, 7750, 8263
Eam1104I CTCTTC 9 cut(s) 6, 2277, 2937, 3390, 3547, 4830, 5594, 7538, 8356
Eam1105I GACNNNNNGTC 2 cut(s) 2682, 8668
EarI CTCTTC 9 cut(s) 6, 2277, 2937, 3390, 3547, 4830, 5594, 7538, 8356
EciI GGCGGA 1 cut(s) 7086
Ecl136II GAGCTC 3 cut(s) 4033, 8298, 8501
Eco24I GRGCYC 7 cut(s) 410, 3315, 4035, 8049, 8300, 8503, 8894
Eco31I GGTCTC 4 cut(s) 2669, 3942, 5540, 6676
Eco32I GATATC 3 cut(s) 5235, 6530, 8746
Eco47I GGWCC 8 cut(s) 1211, 2126, 2479, 3023, 3820, 7486, 7832, 8243
Eco47III AGCGCT 3 cut(s) 3660, 7634, 8760
Eco53kI GAGCTC 3 cut(s) 4033, 8298, 8501
Eco57I CTGAAG 5 cut(s) 2754, 4025, 5637, 7653, 8633
Eco72I CACGTG 2 cut(s) 271, 4226
Eco88I CYCGRG 6 cut(s) 768, 3026, 3937, 5369, 6686, 8082
EcoICRI GAGCTC 3 cut(s) 4033, 8298, 8501
EcoNI CCTNNNNNAGG 1 cut(s) 3132
EcoO109I RGGNCCY 5 cut(s) 1778, 2126, 3023, 3820, 8243
EcoRI GAATTC 2 cut(s) 361, 8638
EcoRII CCWGG 9 cut(s) 401, 2175, 2427, 5633, 6289, 6381, 7752, 8386, 8688
EcoRV GATATC 3 cut(s) 5235, 6530, 8746
EcoT22I ATGCAT 5 cut(s) 1540, 1961, 3637, 4811, 6622
EcoT38I GRGCYC 7 cut(s) 410, 3315, 4035, 8049, 8300, 8503, 8894
EgeI GGCGCC 1 cut(s) 6288
EheI GGCGCC 1 cut(s) 6288
Esp3I CGTCTC 1 cut(s) 5944
FalI AAGNNNNNCTT 6 cut(s) 3169, 3201, 5719, 5751, 5772, 5804
FaqI GGGAC 9 cut(s) 823, 1720, 3036, 4722, 7447, 8176, 8229, 8651, 8745
FauI CCCGC 4 cut(s) 1384, 1985, 5586, 7371
FauNDI CATATG 4 cut(s) 3594, 3631, 4486, 7612
FbaI TGATCA 2 cut(s) 391, 5983
FblI GTMKAC 3 cut(s) 1744, 5673, 5702
FriOI GRGCYC 7 cut(s) 410, 3315, 4035, 8049, 8300, 8503, 8894
FspI TGCGCA 1 cut(s) 7335
GlaI GCGC 9 cut(s) 3480, 3660, 3866, 5831, 6288, 7335, 7634, 7875, 8760
GsaI CCCAGC 4 cut(s) 1169, 6783, 7522, 8602
HaeII RGCGCY 6 cut(s) 3482, 3662, 6290, 7636, 7877, 8762
HapII CCGG 8 cut(s) 551, 1214, 1750, 6896, 7184, 7588, 8174, 8828
HgaI GACGC 6 cut(s) 1755, 3516, 4368, 5781, 8219, 8458
HhaI GCGC 9 cut(s) 3481, 3661, 3867, 5832, 6289, 7336, 7635, 7876, 8761
Hin1I GRCGYC 6 cut(s) 1747, 2683, 3527, 6287, 8230, 8664
Hin6I GCGC 9 cut(s) 3479, 3659, 3865, 5830, 6287, 7334, 7633, 7874, 8759
HinP1I GCGC 9 cut(s) 3479, 3659, 3865, 5830, 6287, 7334, 7633, 7874, 8759
HincII GTYRAC 7 cut(s) 1745, 2806, 5767, 6219, 7194, 8185, 8793
HindII GTYRAC 7 cut(s) 1745, 2806, 5767, 6219, 7194, 8185, 8793
HindIII AAGCTT 2 cut(s) 2522, 5387
HpaI GTTAAC 1 cut(s) 7194
HpaII CCGG 8 cut(s) 551, 1214, 1750, 6896, 7184, 7588, 8174, 8828
Hpy99I CGWCG 8 cut(s) 1746, 1749, 2046, 3370, 3532, 4384, 8235, 8674
Hsp92I GRCGYC 6 cut(s) 1747, 2683, 3527, 6287, 8230, 8664
HspAI GCGC 9 cut(s) 3479, 3659, 3865, 5830, 6287, 7334, 7633, 7874, 8759
KasI GGCGCC 1 cut(s) 6286
KflI GGGWCCC 1 cut(s) 3023
Kpn2I TCCGGA 2 cut(s) 550, 7587
KpnI GGTACC 1 cut(s) 3420
KroI GCCGGC 1 cut(s) 1749
KroNI GCCGGC 1 cut(s) 1751
Ksp22I TGATCA 2 cut(s) 391, 5983
KspAI GTTAAC 1 cut(s) 7194
LguI GCTCTTC 1 cut(s) 4830
MbiI CCGCTC 3 cut(s) 1992, 5374, 5593
MfeI CAATTG 5 cut(s) 1317, 1803, 4161, 7281, 8490
MlsI TGGCCA 2 cut(s) 5555, 7752
MluNI TGGCCA 2 cut(s) 5555, 7752
Mly113I GGCGCC 1 cut(s) 6287
MlyI GAGTC 8 cut(s) 269, 1163, 2567, 2923, 4039, 5351, 7137, 8727
MmeI TCCRAC 5 cut(s) 2287, 3348, 3993, 5776, 6470
Mox20I TGGCCA 2 cut(s) 5555, 7752
Mph1103I ATGCAT 5 cut(s) 1540, 1961, 3637, 4811, 6622
MroI TCCGGA 2 cut(s) 550, 7587
MroNI GCCGGC 1 cut(s) 1749
MroXI GAANNNNTTC 8 cut(s) 3060, 3184, 3467, 3741, 6581, 6930, 7099, 7161
MscI TGGCCA 2 cut(s) 5555, 7752
MslI CAYNNNNRTG 6 cut(s) 2591, 4804, 4930, 5991, 6461, 7341
Msp20I TGGCCA 2 cut(s) 5555, 7752
MspCI CTTAAG 1 cut(s) 2447
MspI CCGG 8 cut(s) 551, 1214, 1750, 6896, 7184, 7588, 8174, 8828
MunI CAATTG 5 cut(s) 1317, 1803, 4161, 7281, 8490
MvaI CCWGG 9 cut(s) 403, 2177, 2429, 5635, 6291, 6383, 7754, 8388, 8690
MvnI CGCG 2 cut(s) 6372, 8262
NaeI GCCGGC 1 cut(s) 1751
NarI GGCGCC 1 cut(s) 6287
NciI CCSGG 3 cut(s) 1215, 7184, 8175
NcoI CCATGG 1 cut(s) 1883
NdeI CATATG 4 cut(s) 3594, 3631, 4486, 7612
NgoMIV GCCGGC 1 cut(s) 1749
NheI GCTAGC 2 cut(s) 1888, 7876
NmeAIII GCCGAG 2 cut(s) 3680, 6226
NsbI TGCGCA 1 cut(s) 7335
NsiI ATGCAT 5 cut(s) 1540, 1961, 3637, 4811, 6622
NspV TTCGAA 2 cut(s) 6575, 6750
PaeI GCATGC 3 cut(s) 1538, 2038, 4813
PaeR7I CTCGAG 2 cut(s) 3937, 5369
PagI TCATGA 2 cut(s) 64, 6934
PciI ACATGT 1 cut(s) 7925
PciSI GCTCTTC 1 cut(s) 4830
PcsI WCGNNNNNNNCGW 2 cut(s) 1349, 3961
PdiI GCCGGC 1 cut(s) 1751
PdmI GAANNNNTTC 8 cut(s) 3060, 3184, 3467, 3741, 6581, 6930, 7099, 7161
PflFI GACNNNGTC 1 cut(s) 6496
PflMI CCANNNNNTGG 2 cut(s) 1104, 4783
PfoI TCCNGGA 3 cut(s) 401, 7182, 8688
PleI GAGTC 8 cut(s) 269, 1162, 2566, 2923, 4039, 5351, 7136, 8727
PluTI GGCGCC 1 cut(s) 6290
PmaCI CACGTG 2 cut(s) 271, 4226
PmlI CACGTG 2 cut(s) 271, 4226
PpsI GAGTC 8 cut(s) 269, 1162, 2566, 2923, 4039, 5351, 7136, 8727
Ppu21I YACGTR 2 cut(s) 271, 4226
PpuMI RGGWCCY 4 cut(s) 2126, 3023, 3820, 8243
PscI ACATGT 1 cut(s) 7925
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 6792
Psp124BI GAGCTC 3 cut(s) 4035, 8300, 8503
Psp1406I AACGTT 1 cut(s) 2891
Psp5II RGGWCCY 4 cut(s) 2126, 3023, 3820, 8243
Psp6I CCWGG 9 cut(s) 401, 2175, 2427, 5633, 6289, 6381, 7752, 8386, 8688
PspCI CACGTG 2 cut(s) 271, 4226
PspFI CCCAGC 4 cut(s) 1165, 6779, 7518, 8598
PspGI CCWGG 9 cut(s) 401, 2175, 2427, 5633, 6289, 6381, 7752, 8386, 8688
PspPPI RGGWCCY 4 cut(s) 2126, 3023, 3820, 8243
PspXI VCTCGAGB 2 cut(s) 3937, 5369
PstI CTGCAG 8 cut(s) 1315, 3196, 4063, 4414, 4441, 5491, 6216, 7651
PstNI CAGNNNCTG 3 cut(s) 1370, 4067, 4448
PsyI GACNNNGTC 1 cut(s) 6496
PvuII CAGCTG 5 cut(s) 1367, 2051, 4448, 7522, 7838
RseI CAYNNNNRTG 6 cut(s) 2591, 4804, 4930, 5991, 6461, 7341
SacI GAGCTC 3 cut(s) 4035, 8300, 8503
SalI GTCGAC 1 cut(s) 1743
SapI GCTCTTC 1 cut(s) 4830
ScaI AGTACT 3 cut(s) 1028, 3202, 6601
SchI GAGTC 8 cut(s) 269, 1163, 2567, 2923, 4039, 5351, 7137, 8727
SfoI GGCGCC 1 cut(s) 6288
Sfr274I CTCGAG 2 cut(s) 3937, 5369
SfuI TTCGAA 2 cut(s) 6575, 6750
SgrDI CGTCGACG 1 cut(s) 1743
SinI GGWCC 8 cut(s) 1211, 2126, 2479, 3023, 3820, 7486, 7832, 8243
SlaI CTCGAG 2 cut(s) 3937, 5369
SmiMI CAYNNNNRTG 6 cut(s) 2591, 4804, 4930, 5991, 6461, 7341
SphI GCATGC 3 cut(s) 1538, 2038, 4813
SspDI GGCGCC 1 cut(s) 6286
SspI AATATT 2 cut(s) 619, 2238
SstI GAGCTC 3 cut(s) 4035, 8300, 8503
TauI GCSGC 7 cut(s) 711, 1334, 1549, 1687, 5119, 7655, 8265
TspGWI ACGGA 6 cut(s) 865, 3570, 5048, 5691, 7808, 8783
Tth111I GACNNNGTC 1 cut(s) 6496
Van91I CCANNNNNTGG 2 cut(s) 1104, 4783
Vha464I CTTAAG 1 cut(s) 2447
VneI GTGCAC 2 cut(s) 3396, 4227
VpaK11BI GGWCC 8 cut(s) 1211, 2126, 2479, 3023, 3820, 7486, 7832, 8243
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 3132
XbaI TCTAGA 2 cut(s) 2599, 7312
XcmI CCANNNNNNNNNTGG 3 cut(s) 910, 2686, 6436
XhoI CTCGAG 2 cut(s) 3937, 5369
XmiI GTMKAC 3 cut(s) 1744, 5673, 5702
XmnI GAANNNNTTC 8 cut(s) 3060, 3184, 3467, 3741, 6581, 6930, 7099, 7161
ZraI GACGTC 2 cut(s) 2684, 8665
ZrmI AGTACT 3 cut(s) 1028, 3202, 6601
Zsp2I ATGCAT 5 cut(s) 1540, 1961, 3637, 4811, 6622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.