Rw1G020100

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008085
Physical Location & Seq
Reverse (-)
43500109 .. 43524165
24057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020100.1

Sequence Viewer

Length: 8952 bp
ATGGAAGAAGAAGAGGAGAGGAAGGAGGTTGAAAATATTTCCAGGAAGGATACAAATAATCATGAGCTGGTTAGTGGTGTACAGGAAAATGTTGATCCATCTCCACAGGAAGCTACCGTTAATACTGATGGTAAAGCTGATGCAGGACGGAATAGCGTAACATTGCAGGTGACAGATTCTGTACCTAAAGTTTTGGATGAAGACCAATTCGAGCAGGTCAACTTGAAAGAACAAGATAAGAATGTTGGTGCATCTCATAGCAGTCATGTGGAATCAAATCGGTCATCAAATTCAGACAATGCCAGACAATCATATGGTGGGTTTGAAGTTGCCTCACAGGCTTTTACATCAGAATTCGATACTTCTATGGTTGATGAAATGCATGATGATCAGTCTACCTGGAGCCCACGTCAGGACAGTCACTTTGGTCACTCTAACTACACATCTATGTCGGCTGCTAGTTTTGATTCTTCTTCTTATTATGGGGATGCAGGTTATTCTCCTGTTAGTTCACCCCCAAAACCAAGGCAGAAACCTGTTATGCCCAATGTATCTCCGGAGTTACTACATTTGGTGGATTCTGCCATCATGGGAAAGCCTGAAAGTTTGGACAAACTGAAGAATATTGTTAGTGGTGTGGAGAGTTTTGGAACTGGGGAGGAAATGGAGAGCATAGCTTACTTGGTAGTTGATTCGCTTATTGCAACAATGGGTGGTGTTGAAAGTTATGAAGAAGATGAGGATAACAATCCTCCTAGTGTGATGCTAAACTCTCGAGCTGCCATTGTCGCAGGTGAACTTATTCCCTCGCTTCCTGGGTTTGGTGATAGTCATGCTATCATGTCCCCTCGCACACGAATGGTTAGGGGGCTGCTTGCAATATTACGGGCTTGTACAAGAAACAGAGCGATGTGCTCAATGGCTGGTTTATTAGGAGTTCTATTAAGGTCAGCAGAGAAGATTTTTATGCAGGATGTTAATTCAACGGAGCAAATGAGATGGGATGGAACTCCCTTATGTTACTGCATTCAACATTTAGCAGGGCATTCACTTAGTGTAGTTGATATGCACAGATGGTTTCAAGTCATTACTCGAACGCTTACCACAGTATGGGCAACCCGATTAATGCTTGCACTGGAGAAGGCAATGGGTGGAAAGGAGTCGAGGGGACCTGCATGTACTTTTGAGTTTGATGGTGAAAGTTCAGGTTTGCTTGGTCCAGGGGAAAGCCGTTGGCCATTTGCCAATGGGTATGCGTTTGCAACATGGATTTACATTGAATCATTTGCAGATACATTGAATGCAGCAACCGCTGCAGCAGCGATTGCTGCCGCTGCTGCTGCTAAATCAGGAAAATCGTCGGCAATGTCGGCTGCTGCTGCTGCCAGTGCACTTGCTGGTGAAGGCACAGCACACATGCCACGGTTGTTCAGTTTCTTATCTGCTGACAATCAGGGGTTAGAGGCATACTTCCACGCACAGTTTTTGGTGGTCGAATGTGGTAGTGGAAAGGGTAAGAAATCTTCATTACATTTTACGCATGCATTCAAGCCGCAATGCTGGTACTTCATTGGTCTAGAGCATACTTGCAAGCAGGGGCTGCTTGGGAAAGCAGACAGTGAATTAAGATTGTATATTGATGGTTCGCTGTACGAAACTCGACCTTTTGAGTTCCCCCGGATCTCTAAGCCACTTGCATTTTGCTGCATTGGGACAAATCCTCCTGCTACAATGGCTGGATTACAACGTCGTCGCCGTCAATGCCCTTTGTTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGTCCAGAAAGGATGTCACGTTTGGCTTCTAGGGGAGGGGACGCACTTCCTTCATTTGGTCATGGGGCAGGGCTGCCATGGCTAGCAACAAACGTGGAAGTGCAAAATATGGCAGAGGAAAGTTCACTTTTGGATGCAGAAATTGGAGGACTCATTCACCTTTTCTACCACCCCAGTTTGCTTAGCGGGCGGTTCTGTCCAGATGCTTCCCCAAGTGGTGCCTCAGGCATGCTTCGACGACCAGCAGAGGTTCTTGGGCAGGTCCATATTGCTACACGAATGCGGCCTGTAGCAGCTCTATGGGCCTTTTCCTATGGGGGTCCTATGTCTTTACTTCCTTTAGCAGTTAGCAATGTGGATAAAGATACCCTTGAACCACAACAAGGGAATCCCTCTTTGTCTTTGGCTACCACTGCTCTTGCTGCTCCGATATTCCGAATAATTAGCACTGCTATTCGACACCCTTGGAACAGTGAAGAGTTGTGTCGTACCAAAGGGCCTGAGGTTCTGTCAAGAATCTTGAACTATCTTTTGCAAACTTTGTCTTCACTTTATGCTGGAAAACAAAATGGTGTGGGCGATGAGGAGCTTGTTGCTTCCGTTTTATCACTATGTCAATCTCAGCAGAAGAACTATGCACTCAAGGTGCAGCTTTTCAGTACATTGCTATTGGATCTAAAAGTTTGGAGCTTATGTAACTATGGGCTACAAAAGAAGCTTCTTTCATCACTTGCAGACATGGTTTTTACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTTGACAGTTGCAGAAGATGCTATTGGACAATTCGTGAAAAGGATTCAGTGAATACTTTTTCTCTTTCACTTCATGAGGCAAGCCGACCTGTGGGTGAGGTGAATGCTTTGGTTGATGAACTCTTAGTCATTATTGAACTTCTTCTAGTAGCAGCACCTCCTTCATTGGCTTCAGATGACGTTCGTTGTTTACTGGGGTTCATGGTTGACTGCCCACAACCCAATCAGGTTGCAAGGGTTTTGCATCTGATTTATAGATTGGTGGTACAGCCAAATACATCAAGAGCTCAGACATTTGCAGAGGCATTTATAGCTTGTGGTGGGATAGAGACCCTTCTTGTTTTGTTGCAACGAGAAGCCAAAGCGGGTGACTACAGTGTTCCAGAATCCATGACCAAGAATGATGAAGTTTTGTCAGTCCAGCCACCTGAGCAAGATGGTAGTGTTGGGGGAGTTTCTGAAAAGAATCAGGATGATGAAGTAGAATCGTCAAAGGAAAAGGAAAATTTGCATGAGAAAGTTGTTGAATCCCAATCCCATGATGGTGTTAGCAGTCCGATTTCTGTTTCTCCTGAGTTAAACATTGCAAGAATGACTTCTGCTTCAGAAAGTACATTTATAAAGAATCTGGGTGGTATAGCTCTCTCAATTAGTGCTGATAATGCAAGGAATAATGTTTACAATATTGATAAAAGTGATGGGGTTGTTGCCCGAATCATCGGGCTCTTAGGTGCTTTAGTTGCTTCTGGGTACTTGAAAATTGGTTCAACTGCTTCCTCGGATATGACTAACAACCTTTTAGGAAGTGCACTGCATGATGGAGGGGGTGGCATGTTTGAAGATAAAGTTTCCCTTTTACTTTTTGCTTTACAGAAGGCTTTCCAAGCAGCACCAAACCGATTATTGACCAGTAATGTGTATGCAGCATTGTTGGGGGCGTCGATAAATGCCTCTTCAACTGATGAGGGGTTGAACTTTTATGATTCTGGTCATCAATTTGAACATTTGCAACTTCTTTTGGTTCTCTTGCGGTCACTTCCATATGCACCCAAGGCTTTTCAAACCCGAGCGCTACAGGATCTTCTGTTTTTGGCTTGCAGTCAGTCAGAAAATAGAAGCAGTCTTACAAACATGGAGGAATGGCCTGAATGGATTCTTGAGGTTCTCATCTCTAACTATGAGATGGGTGCAAGCAAACATTCTGATTCCGCAAGATCAGGAGACATAGAAGACCTCATACACAACTTCCTGATTATAATGTTAGAGCATTCCATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCTATAGTGGGTGGATCAAGCACCGGAGACCAACGGGTTAGGCGCGAGGAATCATTACCCATATTTAAAAGGAGGCTATTAGGTGGTTTGCTGGACTTCGCAGCTAGAGAACTCCAGGTTCAGACTCAAGTTATTGCTGCGGCATCTGCTAATGTGGCATCAGGGACTTCATCACCAAAAGATGCCAAGGCAGAAGCAGAAAATGTGGCTCAACTTTCTGTAGCATTAGTAGAGAATGCAATAGTGATACTAATGCTTGTTGAGGATCATTTACGGTTACAGTGCAAACTGTCTTCTGTTTCACGTGCAACAGATAGTTCTCCATCTCCCCTTTCTCTTGTATCTCCCCTCAATAACCAGTCAAATTCATCGAATACAGTTGGTGGAGATTCATTTGGGGCTTTGGGTGATCGCAAATCTTTATCTAGTGATTCTGGGGGACTTCCTCTTGATCTTCTTGCTTCAATGGCTGATGCAAATGGCCAAGTATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCGGCTGAGCCTTATGGGTCTGTTTCATGTGCTTTTGTATCATATGGAAGCTGTACTGCGGATCTAGCAATGGGGTGGAAGTATAGGAGCAGATTGTGGTATGGAGTAGGCATTCCTTCAAACACAGCTGCCTTTGGTGGTGGTGGCAGTGGTAGGGAATCTTGGATGGCTGCACTGGAGAAGGATGCAAATGGAAACTGGATTGAGCTTCCTTTGGTGAAAAAGTCTGTTGCAATGCTCCAAGCTTTACTATTAGATGACTCGGGACTTGGTGGTGGACTTGGCATAGGTGGTGGATCTGGTACTGGAATGGGAGGCATGGCAGCACTCTACCAGTTATTGGACAGTGACCAACCATTCTTATGCATGCTCCGAATGACACTTCTTTCGATGAGAGAAGAAGATGATGGTGAAGAGAGCATGCTTATGAGCAATGTAAGCATAGATGTTGGGAAATCAGATGGGAGGAAACCACGATCAGCATTGCTGTGGAGTGTGCTTTCACCTGTTCTAAACATGCCAATTTCTGATTCCAAGAGGCAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTATATCATGCTGTTGGCAGGGACGGAAAGCCTCTCCGTAAACTTTACCTTGAGGCCATTGTACCTCCATTTGTTGCTGTTTTGAGGAGGTGGCGGCCAATTTTGGCTGGAATTCATGAACTTGCAACTGCTGATGGTCTGAATCCTCTTATGGTTGAAGACCGTGCATTGGCTGCTGATGCCCTTCCAATAGAGGCTGCTCTTGCAATGATCTCTCCAGCTTGGGCCGCTGCTTTTGCATCACCACCTGCTGCAATGGCACTGGCAATGATAGCTGCTGGTGCCTCTGGTGGAGAAACTCCAGCTCCTCCAACAACTTCTCAACTTAGGCGTGATTCCTCATTGCTTGAGCGGAAAACTAATAAGCTTCACACATTTTCGAGCTTCCAAAAACCTTTAGAGCAACCTGAAAAAGCCCCAGCTCTACCAAAGGATAAGGCCGCTGCAAAAGCTGCTGCCTTGGCTGCAGCACGTGATCTTGAACGTAATAATAAAATCGGTTCTGGAAGGGGCCTTAGTGCTGTGGCAATGGCCACATCTGCACAGCGGAGGAGTGCTGGTGACATGGAGCGTGTGAAGAGATGGAATATTGCTGAAGCAATGGAAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACCAGATCAGTCTATGGAAAAGATTTTAATGCTTTATCGTATAAATTTATTGCTGTTCTTGTGGCAAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGTTCTCAAGTTGATCTAATAACTCGTCATCGTTTGGGCAAAGGAAGTCGTGCATGGCGCAAGCTCATGCATTGCTTGATTGAGATGAAGTGTCTTCTTGGGCCATCTGGAGACCAATTATGCAATCAATCACCTGTTTTCTGGAAGCTAGATTTTATGGAAAGTTCTTCTAGGATGAGACGATGTGTGAGGAGGAATTACGAAGGTTCTGACCATTTTGGTGCTGCTGCCAATTTTGAGGATCCTATTAAGACAAAAGAACAGGAAAATGTCATAAGTTCCTCAAATGCTCCTATTTTGGCAGCAGAAGCAATTGCCGTGGAGGCAGTAAACGAAGATGATGAACAAGGGGAGGTTGAGAATATGGATGGTAGACCCTATGGTATAGAAGAGAGTGGGGAGAATCATTCACGACTGTCTGAAACAGCTGAGAAAAGCCTGCTGGCACCTGCTGAATCTGATGATACTCAAGTTGCTGGTGAACCAGGCTTGGTCCAAAGTTCGTCACCAATTGCGGCTGGATATGTTCCTAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTCCTTCGTCAATGGTTCGCCCATTGAGGGTTATAAGTGGAACTTTTCAGGTAACAAGTAGAAGAATAAATTTCATAGTTGATAACAGTGATGTGAATGGTTCTTTGGATGAACTAGATTGCAAGGAAATGAGAGAAGAACATAAGGATCGTAGCTGGTCTATGTCATCCCTTCATCAAATATACAGCCGAAGATATCTCCTAAGAAGAAGTGCACTGGAGCTATTTTTGGTTGATCGTTCAAACTTCTTCTTTGATTTTGGGAGTACGGAAGGACGAAGAAACGCATATCGAGCTATTGTTCAAGCACGGCCTCCCCATTTGAATAATATATATCTTGCAACTCAGAGACCTGAACAACTTCTGAAGAGAACACAGCTTATGGAGCGTTGGGCTAGGTGGGAGATCAGCAATTTCGAATATCTAATGCAGCTCAATACCCTTGCGGGGCGTAGTTACAATGACATTACTCAGTATCCTGTTTTCCCATGGATCCTTTCTGATTACAGTTCGAAGACTTTGGATCTCGCAGACCCTTCTTCTTATCGAGACCTTTCAAAGCCTGTTGGTGCTTTGAATTCTGATCGTCTGGAAAAATTTCAAGAGAGATATTCCAGCTTCGAGGACCCAGTTATACCCAAATTCCATTATGGTTCTCATTATTCCAGCGCTGGAACAGTGCTATATTATCTTGTTAGAGTTGAACCGTTTACAACTCTGTCAATTCAACTGCAAGGCGGAAAGTTTGATCATGCAGATCGGATGTTTTCAGATATTACTTCTACTTGGAATGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCCGAGTTGTTCTACCTCCCTGAGATCTTAACCAATGAAAATTCAATCGATTTTGGTACAACACAAACAGGCGGAAAACTTGGTTCTGTCAAACTTCCACCATGGGCAGAAAACCCAATTGATTTCATTCATAAGCATCGGAAGGCTCTTGAAAGCGAGCACGTATCTGCACATTTGCATGAATGGATTGATCTTATATTTGGGTATAAGCAACGTGGTAAAGAAGCTATATTGGCAAATAATGTTTTCTTCTACATTACCTATGAAGGGACTGTTGATATTGATAAGATATCAGACCCAGTACAACAACGTGCAACACAAGACCAGATTGCATACTTTGGTCAAACGCCATCACAACTTCTTACCATCCCTCACTTGAAGAAGATGCCACTAGCAGATGTTCTTCATTTGCAGACCATCTTCCGGAACCCAAAAGAAGTCAAACAATATGCTGTTCCTGCTCCTGAGCGTTGCAATCTTCCTGCAGCTGGTATTCATGCATCTTCAGATACTGTCGTAATTGTTGATATGCATGCACCAGCAGCACATGTTGCACAGCACAAGTGGCAGCCGAACACTCCTGATGGTCAAGGTATGCCTTTCCTCTTTCAACACGGAAAGCCTGCAGCAAGCTCCACTGGTGGAGCATTTATGCGTATGTTCAAAGGGCCTGCTGGATCTGGTTCCGAGGATTGGCTTTTTCCTCAAGCTCTAGCATTTGCTACATCTGGAATCAGAAGCTCGGCTATTGTTTCCATAACATGTGACAAAGAAGTCATCACTGGTGGGCATGTGGACAACAGTATCAAGCTAGTTTCATCAGATGGAGCAAAAACCTTGGAGACAGCCTTTGGCCACTGCGCTCCAGTCACTTGTCTTGGACTTTCACCTGATAGCAACTACCTTGTGACGGGATCCAGAGATACTACTGTTTTACTTTGGAGAATACATAGAGCATTTACTTCTCGCCCAAGCAGCGTATCAGAGTCTTCTAGTGGGACACCAGGCACAACAAGCAATAGTAATTTATCACATATATTGGCAGACAAAAGCAGGAGGCGTCGTATTGAAGGCCCCATACATGTTCTTCGAGGCCACCAGAGGGAAATACTTTCTTGCTGTGTGAGCTCAGATCTTGGGATAGTTGTTTCATGCTCCCAATCATCAGATGTGCTCTTGCATTCCATAAGAAGAGGTCGGCTGATCAGAAGGCTGCCTGGTGTGGAGGCCCATGCTGTCTGCCTCTCATCTGAGGGAGTTGTATTGACTTGGAATAAAATGCTCAATACTTTGAGTACCTTTACTCTTAATGGATCTCTCATTGCCAGAGCTCAGTTACCGGTATCCGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATAGGAATAAACTTGTCTATAGAAAGTGATAGAACCTTCAGTGGCAGCTGGGATTCTAAGCTTAAGAACACAGAGTTTGAGGATCTTTCACTGGAGTCAGAGGGAACTGAAGAAATCAACAGATTGGACACTCCATCGCCTTCAATTTGCTTCCTGGATATTCACACACTGAAGGTTTTTCATATATTGAAGTTGGGAGAAGGAAGGGAGATCACATCTCTTGCTCTAAACACAGACAATACAAACCTTCTTGTGTCGACTGCAGATAAACAGTTGATAATTTTCACTGATCCAGCTTTGAGCTTGAAAGTGGTGGATCAGATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTAAGTCCCCTAATAAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

2983

Amino Acids

325.23

Weight (kDa)

5.54

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 683 - 989 3.5e-59 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1196 - 1308 1.3e-08 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2121 - 2218 1e-26 PH domain associated with Beige/BEACH
Beach PF02138 2246 - 2521 2.4e-121 Beige/BEACH domain
WD40_Prp19 PF24814 2639 - 2799 1.9e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 2642 - 2805 1.1e-10 WDR5 beta-propeller domain
NBCH_WD40 PF20426 2643 - 2853 5.2e-22 Neurobeachin beta propeller domain
Beta-prop_WDR3_1st PF25173 2645 - 2710 2.7e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2645 - 2783 3.9e-08 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2645 - 2715 2.2e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 2650 - 2721 8.5e-07 THOC3 beta-propeller domain
WD40 PF00400 2676 - 2708 2.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 3224, 3860, 6386
AarI CACCTGC 4 cut(s) 157, 782, 5296, 6247
AasI GACNNNNNNGTC 1 cut(s) 7955
Acc36I ACCTGC 8 cut(s) 157, 205, 482, 782, 1180, 2062, 5296, 6247
AccB1I GGYRCC 3 cut(s) 2030, 5321, 6235
AccB7I CCANNNNNTGG 2 cut(s) 1110, 4801
AccBSI CCGCTC 1 cut(s) 5392
AccI GTMKAC 3 cut(s) 395, 6163, 8834
AccII CGCG 1 cut(s) 3981
AccIII TCCGGA 2 cut(s) 556, 7605
AcoI YGGCCR 5 cut(s) 1235, 4417, 5135, 5571, 8035
AcvI CACGTG 2 cut(s) 4241, 5513
AcyI GRCGYC 2 cut(s) 3542, 8242
AdeI CACNNNGTG 1 cut(s) 1055
AfeI AGCGCT 2 cut(s) 3675, 7021
AflII CTTAAG 1 cut(s) 8639
AflIII ACRYGT 3 cut(s) 7729, 7943, 8263
AgeI ACCGGT 1 cut(s) 8521
AjiI CACGTC 1 cut(s) 410
AjuI GAANNNNNNNTTGG 6 cut(s) 2611, 2643, 4975, 5007, 6440, 6472
Alw21I GWGCWC 9 cut(s) 917, 1393, 2893, 3415, 6568, 7344, 8312, 8358, 8515
Alw26I GTCTC 8 cut(s) 2927, 3819, 3957, 5895, 5962, 6694, 6894, 8018
Alw44I GTGCAC 3 cut(s) 1389, 3411, 6564
AlwNI CAGNNNCTG 4 cut(s) 179, 1600, 4466, 7694
Ama87I CYCGRG 4 cut(s) 774, 3669, 4723, 7184
Aor13HI TCCGGA 2 cut(s) 556, 7605
Aor51HI AGCGCT 2 cut(s) 3675, 7021
ApaLI GTGCAC 3 cut(s) 1389, 3411, 6564
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 4831, 4863
AseI ATTAAT 1 cut(s) 1124
AsiGI ACCGGT 1 cut(s) 8521
Asp700I GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179
AspLEI GCGC 6 cut(s) 3676, 3882, 3981, 5850, 7022, 8045
AsuC2I CCSGG 1 cut(s) 1678
AsuII TTCGAA 2 cut(s) 6768, 6863
AsuNHI GCTAGC 1 cut(s) 1894
AvaI CYCGRG 4 cut(s) 774, 3669, 4723, 7184
AvaII GGWCC 7 cut(s) 1169, 1217, 1814, 2074, 2132, 6283, 6976
AxyI CCTNAGG 2 cut(s) 2035, 2313
BaeGI GKGCMC 3 cut(s) 1393, 3415, 6568
BaeI ACNNNNGTAYC 8 cut(s) 6246, 6279, 7683, 7716, 7969, 8002, 8097, 8130
BalI TGGCCA 4 cut(s) 1237, 4419, 5573, 8037
BamHI GGATCC 3 cut(s) 6031, 6843, 8096
BanI GGYRCC 3 cut(s) 2030, 5321, 6235
BanII GRGCYC 5 cut(s) 407, 2893, 3330, 8312, 8515
BarI GAAGNNNNNNTAC 8 cut(s) 1507, 1539, 3712, 3744, 3825, 3857, 8244, 8276
BbrPI CACGTG 2 cut(s) 4241, 5513
BbsI GAAGAC 9 cut(s) 207, 2349, 3840, 4221, 5205, 5876, 6872, 7161, 8163
Bbv12I GWGCWC 9 cut(s) 917, 1393, 2893, 3415, 6568, 7344, 8312, 8358, 8515
BceAI ACGGC 4 cut(s) 1215, 1740, 6092, 6677
BciVI GTATCC 3 cut(s) 43, 6837, 8536
BclI TGATCA 3 cut(s) 388, 7099, 8385
BcnI CCSGG 1 cut(s) 1678
BcoDI GTCTC 8 cut(s) 2927, 3819, 3957, 5895, 5962, 6694, 6894, 8018
BfoI RGCGCY 2 cut(s) 3677, 7023
BfrI CTTAAG 1 cut(s) 8639
BfuAI ACCTGC 8 cut(s) 157, 205, 482, 782, 1180, 2062, 5296, 6247
BfuI GTATCC 3 cut(s) 43, 6837, 8536
BglI GCCNNNNNGGC 2 cut(s) 338, 6113
BglII AGATCT 2 cut(s) 7206, 8314
BlpI GCTNAGC 2 cut(s) 1994, 4467
Bme18I GGWCC 7 cut(s) 1169, 1217, 1814, 2074, 2132, 6283, 6976
BmeT110I CYCGRG 4 cut(s) 774, 3669, 4723, 7184
BmgBI CACGTC 1 cut(s) 410
BmrI ACTGGG 5 cut(s) 663, 1980, 2807, 6974, 7475
BmtI GCTAGC 1 cut(s) 1898
BmuI ACTGGG 5 cut(s) 663, 1980, 2807, 6974, 7475
BpiI GAAGAC 9 cut(s) 207, 2349, 3840, 4221, 5205, 5876, 6872, 7161, 8163
Bpu10I CCTNAGC 2 cut(s) 3033, 7647
Bpu1102I GCTNAGC 2 cut(s) 1994, 4467
Bpu14I TTCGAA 2 cut(s) 6768, 6863
BpuMI CCSGG 1 cut(s) 1678
Bsa29I ATCGAT 1 cut(s) 7230
BsaAI YACGTR 3 cut(s) 4241, 5513, 7345
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 3542, 8242
BsaI GGTCTC 5 cut(s) 2927, 3957, 5895, 6694, 6894
BsaWI WCCGGW 5 cut(s) 556, 3959, 7605, 8521, 8528
Bse118I RCCGGY 1 cut(s) 8521
Bse21I CCTNAGG 2 cut(s) 2035, 2313
Bse8I GATNNNNATC 1 cut(s) 747
BseAI TCCGGA 2 cut(s) 556, 7605
BseCI ATCGAT 1 cut(s) 7230
BseJI GATNNNNATC 1 cut(s) 747
BseRI GAGGAG 6 cut(s) 29, 2411, 5140, 5337, 5605, 5995
BseSI GKGCMC 3 cut(s) 1393, 3415, 6568
BseYI CCCAGC 2 cut(s) 5458, 8625
BsgI GTGCAG 5 cut(s) 2480, 3945, 4617, 5565, 7335
Bsh1236I CGCG 1 cut(s) 3981
BshNI GGYRCC 3 cut(s) 2030, 5321, 6235
BshTI ACCGGT 1 cut(s) 8521
BshVI ATCGAT 1 cut(s) 7230
BsiHKAI GWGCWC 9 cut(s) 917, 1393, 2893, 3415, 6568, 7344, 8312, 8358, 8515
BsiHKCI CYCGRG 4 cut(s) 774, 3669, 4723, 7184
BsiSI CCGG 6 cut(s) 557, 1678, 3960, 7606, 8522, 8529
BsmAI GTCTC 8 cut(s) 2927, 3819, 3957, 5895, 5962, 6694, 6894, 8018
BsmBI CGTCTC 1 cut(s) 5962
Bso31I GGTCTC 5 cut(s) 2927, 3957, 5895, 6694, 6894
BsoBI CYCGRG 4 cut(s) 774, 3669, 4723, 7184
Bsp119I TTCGAA 2 cut(s) 6768, 6863
Bsp13I TCCGGA 2 cut(s) 556, 7605
Bsp1407I TGTACA 2 cut(s) 79, 893
Bsp1720I GCTNAGC 2 cut(s) 1994, 4467
Bsp19I CCATGG 3 cut(s) 1889, 6839, 7283
BspDI ATCGAT 1 cut(s) 7230
BspEI TCCGGA 2 cut(s) 556, 7605
BspFNI CGCG 1 cut(s) 3981
BspHI TCATGA 3 cut(s) 61, 2677, 5155
BspMAI CTGCAG 7 cut(s) 1318, 4432, 4459, 5509, 7669, 7810, 8842
BspMI ACCTGC 8 cut(s) 157, 205, 482, 782, 1180, 2062, 5296, 6247
BspOI GCTAGC 1 cut(s) 1898
BspT104I TTCGAA 2 cut(s) 6768, 6863
BspT107I GGYRCC 3 cut(s) 2030, 5321, 6235
BspTI CTTAAG 1 cut(s) 8639
BspTNI GGTCTC 5 cut(s) 2927, 3957, 5895, 6694, 6894
BsrBI CCGCTC 1 cut(s) 5392
BsrFI RCCGGY 1 cut(s) 8521
BsrGI TGTACA 2 cut(s) 79, 893
BssAI RCCGGY 1 cut(s) 8521
BssNI GRCGYC 2 cut(s) 3542, 8242
BssT1I CCWWGG 9 cut(s) 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019
Bst6I CTCTTC 8 cut(s) 6, 2283, 3562, 4869, 5612, 6174, 6713, 8368
BstACI GRCGYC 2 cut(s) 3542, 8242
BstAFI CTTAAG 1 cut(s) 8639
BstAPI GCANNNNNTGC 9 cut(s) 1313, 1325, 1600, 2622, 3877, 5213, 5492, 5750, 7733
BstAUI TGTACA 2 cut(s) 79, 893
BstBAI YACGTR 3 cut(s) 4241, 5513, 7345
BstBI TTCGAA 2 cut(s) 6768, 6863
BstDSI CCRYGG 5 cut(s) 1421, 1889, 6108, 6839, 7283
BstFNI CGCG 1 cut(s) 3981
BstH2I RGCGCY 2 cut(s) 3677, 7023
BstHHI GCGC 6 cut(s) 3676, 3882, 3981, 5850, 7022, 8045
BstMAI GTCTC 8 cut(s) 2927, 3819, 3957, 5895, 5962, 6694, 6894, 8018
BstSLI GKGCMC 3 cut(s) 1393, 3415, 6568
BstUI CGCG 1 cut(s) 3981
BstV2I GAAGAC 9 cut(s) 207, 2349, 3840, 4221, 5205, 5876, 6872, 7161, 8163
BstXI CCANNNNNNTGG 1 cut(s) 3890
Bsu15I ATCGAT 1 cut(s) 7230
Bsu36I CCTNAGG 2 cut(s) 2035, 2313
BsuI GTATCC 3 cut(s) 43, 6837, 8536
BsuTUI ATCGAT 1 cut(s) 7230
BtgI CCRYGG 5 cut(s) 1421, 1889, 6108, 6839, 7283
BtgZI GCGATG 3 cut(s) 923, 2406, 8697
BtrI CACGTC 1 cut(s) 410
BtsI GCAGTG 6 cut(s) 2223, 2259, 3413, 4440, 4615, 8038
BveI ACCTGC 8 cut(s) 157, 205, 482, 782, 1180, 2062, 5296, 6247
CaiI CAGNNNCTG 4 cut(s) 179, 1600, 4466, 7694
CciI TCATGA 3 cut(s) 61, 2677, 5155
CfoI GCGC 6 cut(s) 3676, 3882, 3981, 5850, 7022, 8045
Cfr10I RCCGGY 1 cut(s) 8521
ClaI ATCGAT 1 cut(s) 7230
CseI GACGC 3 cut(s) 1862, 3531, 8231
CspAI ACCGGT 1 cut(s) 8521
CspCI CAANNNNNGTGG 6 cut(s) 1887, 1922, 2212, 2247, 6090, 6125
DraI TTTAAA 1 cut(s) 4003
DraIII CACNNNGTG 1 cut(s) 1055
DrdI GACNNNNNNGTC 1 cut(s) 7955
DseDI GACNNNNNNGTC 1 cut(s) 7955
EaeI YGGCCR 5 cut(s) 1235, 4417, 5135, 5571, 8035
Eam1104I CTCTTC 8 cut(s) 6, 2283, 3562, 4869, 5612, 6174, 6713, 8368
EarI CTCTTC 8 cut(s) 6, 2283, 3562, 4869, 5612, 6174, 6713, 8368
EciI GGCGGA 2 cut(s) 7104, 7269
Ecl136II GAGCTC 3 cut(s) 2891, 8310, 8513
Eco130I CCWWGG 9 cut(s) 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019
Eco24I GRGCYC 5 cut(s) 407, 2893, 3330, 8312, 8515
Eco31I GGTCTC 5 cut(s) 2927, 3957, 5895, 6694, 6894
Eco32I GATATC 2 cut(s) 6548, 7473
Eco47I GGWCC 7 cut(s) 1169, 1217, 1814, 2074, 2132, 6283, 6976
Eco47III AGCGCT 2 cut(s) 3675, 7021
Eco53kI GAGCTC 3 cut(s) 2891, 8310, 8513
Eco72I CACGTG 2 cut(s) 4241, 5513
Eco81I CCTNAGG 2 cut(s) 2035, 2313
Eco88I CYCGRG 4 cut(s) 774, 3669, 4723, 7184
EcoICRI GAGCTC 3 cut(s) 2891, 8310, 8513
EcoO109I RGGNCCY 8 cut(s) 1169, 1784, 2132, 2309, 5551, 6976, 7850, 8255
EcoRI GAATTC 3 cut(s) 353, 5151, 6928
EcoRV GATATC 2 cut(s) 6548, 7473
EcoT14I CCWWGG 9 cut(s) 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019
EcoT22I ATGCAT 6 cut(s) 384, 1546, 4829, 5862, 7684, 7716
EcoT38I GRGCYC 5 cut(s) 407, 2893, 3330, 8312, 8515
ErhI CCWWGG 9 cut(s) 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019
Esp3I CGTCTC 1 cut(s) 5962
FauI CCCGC 3 cut(s) 1991, 2962, 6790
FauNDI CATATG 3 cut(s) 313, 3646, 4504
FbaI TGATCA 3 cut(s) 388, 7099, 8385
FblI GTMKAC 3 cut(s) 395, 6163, 8834
FriOI GRGCYC 5 cut(s) 407, 2893, 3330, 8312, 8515
GlaI GCGC 6 cut(s) 3675, 3881, 3980, 5849, 7021, 8044
GsaI CCCAGC 2 cut(s) 5462, 8629
HaeII RGCGCY 2 cut(s) 3677, 7023
HapII CCGG 6 cut(s) 557, 1678, 3960, 7606, 8522, 8529
HgaI GACGC 3 cut(s) 1862, 3531, 8231
HhaI GCGC 6 cut(s) 3676, 3882, 3981, 5850, 7022, 8045
Hin1I GRCGYC 2 cut(s) 3542, 8242
Hin6I GCGC 6 cut(s) 3674, 3880, 3979, 5848, 7020, 8043
HinP1I GCGC 6 cut(s) 3674, 3880, 3979, 5848, 7020, 8043
HincII GTYRAC 4 cut(s) 220, 2812, 5785, 8835
HindII GTYRAC 4 cut(s) 220, 2812, 5785, 8835
HindIII AAGCTT 5 cut(s) 2528, 4704, 5405, 8636, 8906
HpaII CCGG 6 cut(s) 557, 1678, 3960, 7606, 8522, 8529
Hpy99I CGWCG 6 cut(s) 1363, 1752, 1755, 2052, 3547, 8247
Hsp92I GRCGYC 2 cut(s) 3542, 8242
HspAI GCGC 6 cut(s) 3674, 3880, 3979, 5848, 7020, 8043
Kpn2I TCCGGA 2 cut(s) 556, 7605
Ksp22I TGATCA 3 cut(s) 388, 7099, 8385
MbiI CCGCTC 1 cut(s) 5392
MfeI CAATTG 4 cut(s) 1809, 6102, 6300, 7299
MlsI TGGCCA 4 cut(s) 1237, 4419, 5573, 8037
MluNI TGGCCA 4 cut(s) 1237, 4419, 5573, 8037
MlyI GAGTC 7 cut(s) 1169, 1956, 2573, 4054, 4715, 8177, 8681
MmeI TCCRAC 2 cut(s) 5375, 5794
Mox20I TGGCCA 4 cut(s) 1237, 4419, 5573, 8037
Mph1103I ATGCAT 6 cut(s) 384, 1546, 4829, 5862, 7684, 7716
MroI TCCGGA 2 cut(s) 556, 7605
MroXI GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179
MscI TGGCCA 4 cut(s) 1237, 4419, 5573, 8037
MslI CAYNNNNRTG 9 cut(s) 446, 857, 2597, 3147, 4822, 4886, 4948, 6009, 7359
Msp20I TGGCCA 4 cut(s) 1237, 4419, 5573, 8037
MspCI CTTAAG 1 cut(s) 8639
MspI CCGG 6 cut(s) 557, 1678, 3960, 7606, 8522, 8529
MunI CAATTG 4 cut(s) 1809, 6102, 6300, 7299
MvnI CGCG 1 cut(s) 3981
NciI CCSGG 1 cut(s) 1678
NcoI CCATGG 3 cut(s) 1889, 6839, 7283
NdeI CATATG 3 cut(s) 313, 3646, 4504
NheI GCTAGC 1 cut(s) 1894
NmeAIII GCCGAG 1 cut(s) 7904
NsiI ATGCAT 6 cut(s) 384, 1546, 4829, 5862, 7684, 7716
NspV TTCGAA 2 cut(s) 6768, 6863
PaeI GCATGC 5 cut(s) 1544, 2044, 4831, 4885, 7718
PaeR7I CTCGAG 1 cut(s) 774
PagI TCATGA 3 cut(s) 61, 2677, 5155
PaqCI CACCTGC 4 cut(s) 157, 782, 5296, 6247
PciI ACATGT 3 cut(s) 7729, 7943, 8263
PcsI WCGNNNNNNNCGW 1 cut(s) 1753
PdmI GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179
PflMI CCANNNNNTGG 2 cut(s) 1110, 4801
PfoI TCCNGGA 2 cut(s) 41, 8730
PinAI ACCGGT 1 cut(s) 8521
PleI GAGTC 7 cut(s) 1168, 1956, 2572, 4054, 4715, 8176, 8680
PmaCI CACGTG 2 cut(s) 4241, 5513
PmlI CACGTG 2 cut(s) 4241, 5513
PpsI GAGTC 7 cut(s) 1168, 1956, 2572, 4054, 4715, 8176, 8680
Ppu21I YACGTR 3 cut(s) 4241, 5513, 7345
PpuMI RGGWCCY 3 cut(s) 1169, 2132, 6976
PscI ACATGT 3 cut(s) 7729, 7943, 8263
PshBI ATTAAT 1 cut(s) 1124
PsiI TTATAA 3 cut(s) 3224, 3860, 6386
Psp124BI GAGCTC 3 cut(s) 2893, 8312, 8515
Psp5II RGGWCCY 3 cut(s) 1169, 2132, 6976
PspCI CACGTG 2 cut(s) 4241, 5513
PspFI CCCAGC 2 cut(s) 5458, 8625
PspPPI RGGWCCY 3 cut(s) 1169, 2132, 6976
PstI CTGCAG 7 cut(s) 1318, 4432, 4459, 5509, 7669, 7810, 8842
PstNI CAGNNNCTG 4 cut(s) 179, 1600, 4466, 7694
PvuII CAGCTG 4 cut(s) 4589, 6218, 7670, 8625
RseI CAYNNNNRTG 9 cut(s) 446, 857, 2597, 3147, 4822, 4886, 4948, 6009, 7359
SacI GAGCTC 3 cut(s) 2893, 8312, 8515
SalI GTCGAC 1 cut(s) 8833
SchI GAGTC 7 cut(s) 1169, 1956, 2573, 4054, 4715, 8177, 8681
Sfr274I CTCGAG 1 cut(s) 774
SfuI TTCGAA 2 cut(s) 6768, 6863
SinI GGWCC 7 cut(s) 1169, 1217, 1814, 2074, 2132, 6283, 6976
SlaI CTCGAG 1 cut(s) 774
SmiMI CAYNNNNRTG 9 cut(s) 446, 857, 2597, 3147, 4822, 4886, 4948, 6009, 7359
SphI GCATGC 5 cut(s) 1544, 2044, 4831, 4885, 7718
SspI AATATT 5 cut(s) 37, 625, 882, 3289, 5629
SstI GAGCTC 3 cut(s) 2893, 8312, 8515
StyI CCWWGG 9 cut(s) 524, 1889, 2276, 3654, 4122, 5499, 6839, 7283, 8019
TaqII GACCGA 1 cut(s) 270
TatI WGTACW 7 cut(s) 79, 893, 1178, 2471, 3215, 4514, 7483
TauI GCSGC 9 cut(s) 1334, 1555, 2098, 4079, 4466, 5137, 5270, 5483, 6308
TspGWI ACGGA 7 cut(s) 163, 1001, 2401, 5066, 5079, 6635, 7812
Van91I CCANNNNNTGG 2 cut(s) 1110, 4801
Vha464I CTTAAG 1 cut(s) 8639
VneI GTGCAC 3 cut(s) 1389, 3411, 6564
VpaK11BI GGWCC 7 cut(s) 1169, 1217, 1814, 2074, 2132, 6283, 6976
VspI ATTAAT 1 cut(s) 1124
XbaI TCTAGA 1 cut(s) 1576
XcmI CCANNNNNNNNNTGG 1 cut(s) 3143
XhoI CTCGAG 1 cut(s) 774
XmiI GTMKAC 3 cut(s) 395, 6163, 8834
XmnI GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3756, 6711, 6948, 7179
Zsp2I ATGCAT 6 cut(s) 384, 1546, 4829, 5862, 7684, 7716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.