RchiOBHm_Chr1g0351141

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008085
Physical Location & Seq
Reverse (-)
44341668 .. 44365354
23687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57693

Sequence Viewer

Length: 8955 bp
ATGGAAGAAGAAGAGGAGAGGAAGAAGGAGGTTGAAAATATTTCCAGGAAGGATACAAATAATCATGAGCTGGTTAGTGGTGTACAGGAAAATGTTGATCCATCTCCACAGGAAGCTACCGTTAATACTGATGGTAAAGCTGATGCAGGACGGAATAGTGTAACATTGCAGGTAACAGATTCTGTACCTAAAGTTTTGGATGAAGACCAATTCGAGCAGGTCAACTTGAAAGAACAAGATAAGAATGTTGGTGCATCTCATAGCAGTCATGTGGAATCAAATCGGTCATCAAATTCAGACAATGCCAGACAATCATATGGTGGGTTTGAAGTTGCCTCACAGGCTTTTACATCAGAATTCGATACTTCTATGGTTGATGAAATGCATGATGATCAGTCTACCTGGAGCCCACGTCAGGACAGTCAATTTGGTCACTCTAACTACACATCTATGTCGGCTGCTAGTTTTGATTCTTCTTCTTATTATGGGGATGCAGGTTATTCTCCTGTTAGTTCACCCCCAAAACCAAGGCAGAAACCTGTTATGCCCAATGTATCTCCGGAGTTACTACATTTGGTGGATTCTGCCATCATGGGAAAGCCTGAAAGTTTGGACAAACTGAAGAATATTGTTAGTGGTGTGGAGAGTTTTGGAACTGGGGAGGAAATGGAGAGCATTGCTTACTTGGTAGTTGATTCGCTTATTGCAACAATGGGTGGTGTTGAAAGTTATGAAGAAGATGAGGATAACAATCCTCCTAGCGTGATGCTAAACTCTCGAGCTGCCATTGTAGCAGGCGAACTTATTCCCTCGCTTCCTGGGTTTGGTGATAGTCATGCTATCATGTCCCCTCGCACACGAATGGTGAGGGGGCTGCTTGCAATATTACGGGCTTGTACAAGAAACAGAGCGATGTGCTCAATGGCTGGTTTATTAGGAGTTCTATTAAGGTCAGCAGAGAAGATTTTTATGCAGGATGTTAATTCAACGGAGCAAATGAGATGGGATGGAACTCCCTTATGTTACTGCATTCAACATTTAGCAGGGCATTCACTTAGTGTAGTTGATATGCACAGATGGTTTCAAGTCATTACTCGAACGCTTACCACAGTATGGGCAACCCGATTAATGCTTGCACTGGAGAAGGCAATGGGTGGAAAGGAGTCGAGGGGACCTGCATGTACTTTTGAGTTTGATGGTGAAAGTTCAGGTTTGCTTGGTCCAGGGGAAAGCCGTTGGCCATTTGCCAATGGGTATGCGTTTGCAACATGGATTTACATTGAATCATTTGCAGATACATTGAATGCAGCAACTGCTGCAGCAGCGATTGCTGCAGCTGCTGCTGCCAAATCAGGAAAGTCGTCGGCAATGTCGGCTGCTGCTGCTGCCAGTGCACTTGCTGGTGAAGGCACAGCACACATGCCACGGTTGTTCAGTTTCTTATCTGCTGACAATCAGGGGTTAGAGGCATACTTCCACGCACAGTTTTTGGTGGTCGAATGTGGTAGTGGAAAGGGTAAGAAATCTTCATTACATTTTACGCATGCATTCAAGCCGCAATGCTGGTACTTCATTGGTCTAGAGCATACTTGCAAGCAAGGGCTGCTTGGGAAAGCAGACAGTGAATTAAGATTGTATATTGATGGTTCGCTGTACGAAACTCGACCTTTTGAGTTCCCCCGGATCTCTAAGCCACTTGCATTTTGCTGCATTGGGACAAATCCTCCTGCTACAATGGCTGGATTACAACGTCGTCGCCGTCAATGCCCTTTGTTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGTCCAGAAAGGATGTCACGTTTGGCTTCTAGGGGAGGGGATGCACTTCCTTCTTTTGGTCATGGGGCAGGGCTGCCATGGCTAGCAACAAACATGGAAGTGCAAAATATGGCAGAGGAAAGTTCACTTTTGGATGCAGAAATTGGAGGACTCATTCACCTTTTCTACCACCCCAGTTTGCTCAGCGGGCGGTTCTGTCCAGATGCTTCCCCGAGTGGTGCCTCAGGCATGCTTCGACGACCAGCAGAGGTTCTTGGGCAGGTACATATTGCTACACGAGTGCGGCCTGTAGCAGCTCTATGGGCCTTTTCCTATGGGGGTCCTATGTCTTTACTTCCTTTAGCAGTTAGCAATGTGGATAAAGATACCCTTGAACCACAACAAGGGAATCCCTCTTTGTCTTTGGCTACCACTGCTCTTGCTGCTCCGATATTCCGAATAATTAGCACTGCTATTCGACACCCTTGGAACAGTGAAGAGTTGTGTCGTACCAAAGGGCCTGAGGTTCTGTCAAGAATCTTGAACTATCTTTTGCAAACTTTGTCTTCACTTTATGCTGGAAAACAAAATGGTGTGGGCGATGAGGAGCTTGTTGCGTCCGTTTTATCACTATGTCAATCTCAGCAGAAGAACTATGCACTCAAGGTGCAGCTTTTCAGTACATTGCTATTGGATCTAAAAGTTTGGAGCTTATGTAACTATGGGCTACAAAAGAAGCTTCTGTCATCACTTGCAGACATGGTTTTTACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTTGACAGTTGCAGAAGATGCTATTGGACAATTCGCGAAAAGGATTCAGTGAATACTTTTTCTCTTTCACTTCATGAGGCAAGCCGGCCTGTGGGTGAGGTGAATGCTTTGGTTGATGAACTCTTGGTCATTATTGAACTTCTTCTAGTAGCAGCACCTCCTTCATTGGCTTCAGATGACGTTCGTTGTTTACTGGGGTTCATGGTTGACTGCCCACAACCCAATCAGGTTGCAAGGGTCTTGCATCTGATTTATAGATTGGTGGTACAGCCAAATACATCAAGAGCTCAGACATTTGCAGAGGCATTTATAGCTTGTGGTGGGGTAGAGACCCTTCTTGTTTTGTTGCAACGAGAAGCCAAAGTGGGTGACTACAGTGTTCCAGAATCCATGACCAAGACTGATGAAGTTTTGTCAGTCCAGCCACCTGAGCAAGATGGTAGTGTTGGGGGAGTTTCTGAAAAGAATCAGGATGATGAAGTAGAATTGTCAAAGGAAAAGGAAAATTTGCATGAGAAAGTTGTTGAATCCCAATCCCATGATGGAGCTAGCAGTCCGATTTCTGTTTCTCCTGAGTTGAACATTGCAAGAATGACTTCTGCTTCAGAAAGTACATTTATAAAGAATCTGGGTGGTATAGCTCTCTCAATTAGTGCTGATAATGCAAGGAATAATGTTTACAATATTGATAAAAGTGATGGGGTTGTTGCCCGAATCATCGGGCTCTTAGGTGCTTTAGTTGCTTTTGGGTACTTGAAAATTGGTTCAACTGCTTCCTCGGATATGACTAACAACCTTTTAGGAAGTGCACTGCATGATGGAGGGGGTGGCATGTTTGAAGATAAAGTTTCCCTTTTACTTTTTGCTTTACAAAAGGCTTTCCAAGCAGCACCAAACCGATTATTGACCAGTAATGTGTATGCAGCATTGTTGGGGGCGTCGATAAATGCCTCTTCAACTGATGAGGGGTTGAACTTCTATGATTCTGGTCATCAATTTGAACATTTGCAACTTCTTTTGGTTCTCTTGCGGTCACTTCCATATGCACCCAAGGCTTTTCAAACCCGAGCGCTACAGGATCTTCTGTTTTTGGCTTGCAGTCAGTCAGAAAATAGAAGCAGTCTTACAAACATGGAGGAATGGCCTGAATGGATTCTTGAGGTTCTCATCTCTAACTATGAGATGGGTGCAAGCAAACATTCTGATTCTGCAAGATCAGGAGACATAGAAGACCTCATACACAACTTCCTGATTATAATGTTAGAGCATTCCATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCTATAGTGGGTGGATCAAGCACCGGAGACCAACGGGTTAGGCGCGAGGAATCATTACCCATATTTAAAAGGAGGCTATTAGGTGGTTTGCTGGACTTCGCAGCTAGAGAACTCCAGGTTCAGACTCAAGTTATTGCTGCGGCATCTGCTAATGTGGCATCAGGGACTTCATCACCAAAAGATGCCAAGGCAGAAGCAGAAAATGTGGCTCAACTTTCTGTAGCATTAGTAGAGAATGCAATAGTGATACTAATGCTTGTTGAGGATCATTTACGGTTACAGTGCAAACTGTCTTCTGTTTCACGTGCAACAGATAGTTCTCCATCTCCCCTTTCTCTTGTATCTCCCCTCAATAACCAGTCAAATTCATCGAATACAGTTGGTGGAGATTCATTTGGGGCTTTGGGTGATCGCAAATCCTTATCTAGTGATTCTGGGGGACTTCCTCTTGATCTTCTTGCTTCAATGGCTGATGCAAATGGTCAAGTATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCGGCTGAGCCTTATGGGTCTGTTTCATGTGCTTTTGTATCATATGGAAGCTGTACTGCGGATCTAGCAATGGGGTGGAAGTATAGGAGCAGATTGTGGTATGGAGTAGGCATTCCTTCAAACACAGCAGCCTTTGGTGGTGGTGGCAGCGGTAGGGAATCTTGGATGGCTGCACTAGAGAAGGATGCAAACGGAAACTGGATTGAGCTTCCTTTGGTGAAAAAGTCTGTTGCAATGCTCCAAGCTTTACTATTAGATGATTCGGGACTTGGTGGTGGACTTGGCATAGGTGGTGGATCTGGTACTGGAATGGGAGGCATGGCAGCACTCTATCAGTTGTTGGACAGTGACCAACCATTCTTATGCATGCTCCGAATGACACTTCTTTCGATGAGAGAAGAAGATGATGGTGAAGAGAGCATGCTTATGAGCAATGTAAGCATAGATGTTGGGAAATCAGATGGGAGGAAACCACGATCAGCATTGCTGTGGAGTGTGCTTTCACCTGTTCTAAACATGCCAATTTCTGATTCCAAGAGGCAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTATATCATGCTGTTGGCAGGGATGGAAAGCCTCTCCGTAAACTTTACCTTGAGGCCATTGTACCTCCATTTGTTGCTGTTTTGAGGAGGTGGCGGCCAATTTTGGCTGGAATTCATGAACTTGCAACTGCTGATGGTCTGAATCCTCTTATGGTTGAAGACCGTGCATTGGCTGCTGATGCCCTTCCAATAGAGGCTGCTCTTGCAATGATCTCTCCAGCTTGGGCCGCTGCTTTTGCATCACCACCTGCTGCAATGGCACTGGCAATGATAGCTGCTGGTGCCTCTGGTGGAGAAACTCCAGCTCCTCCGACAACTTCTCAACTTAGGCGTGATTCCTCATTGCTTGAGCGGAAAACTAATAAGCTTCACACATTTTCGAGCTTCCAAAAACCTTTAGAGCAACCTGAAAAAGCCCCAGCTCTACCAAAGGATAAGGCCGCTGCAAAAGCTGCTGCCTTGGCTGCAGCACGTGATCTTGAACGTAATAATAAAATCGGTTCTGGAAGGGGCCTTAGTGCTGTGGCAATGGCCACATCTGCACAGCGGAGGAGTGCTGGTGACATGGAGCGTGTGAAGAGATGGAATATTGCTGAAGCAATGGAAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACCAGATCAGTCTATGGAAAAGATTTTAATGCTTTATCGTATAAATTTATTGCTGTTCTTGTGGCAAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGTTCTCAAGTTGATCTAATAACTCGTCATCGTTTGGGCAAAGGAAGTCGTGCATGGCGCAAGCTCATGCATTGCTTGATTGAGATGAAGTGTCTTCTTGGGCCATCTGGAGACCAATTATGCAATCAATCACCTGTTTTCTGGAAGCTAGATTTTATGGAAAGTTCTTCTAGGATGAGACGATGTGTGAGGAGGAATTACGAAGGTTCTGACCATTTTGGTGCTGCTGCCAATTTTGAGGATCCTATTAAGACAAAAGAACAGGAAAATGTCATAAGTTCCTCAAATGCTCCTATTTTGGCAGCAGAAGCAATTGCCGTGGAGGCAGTAAACGAAGATGATGAACAAGGGGAGATTGAAAATATGGATGGTAGACCGTATGGTATGGAAGAGAGTGGAGAGAATCATTCACGACTGTCTGAAACAGCTGAGAAAAGCCTGCTGGCACCTGCTGAATCTGATGATACTCAAGTTGCTGGTGAACCAGGCTTGGTCCAAAGTTCGTCACCAATTGCGGCTGGATATGTTCCTAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTCCTTCGTCAATGGTTCGCCCATTGAGGGTTATAAGTGGAACTTTTCAGGTAACAAGTAGAAGAATAAATTTCATAGTTGATAACAGTGATGTGAATGGTTCACTGGATGAACTAGATTGCAAGGAAATGAGAGAAGAACATAAGGATCGTAGCTGGTCTATGTCATCCCTTCATCAAATATACAGCCGAAGATATCTCCTAAGAAGAAGTGCACTGGAGCTATTTTTGGTTGATCGTTCAAACTTCTTCTTTGATTTTGGGAGTACGGAAGGACGAAGAAACGCATATCGAGCTATTGTTCAAGCACGGCCTCCCCATTTGAATAATATATATCTTGCAACTCAGAGACCTGAACAACTTCTCAAGAGAACACAGCTTATGGAGCGTTGGGCTAGGTGGGAGATCAGCAATTTTGAATATCTCATGCAGCTCAATACCCTTGCGGGGCGTAGTTACAATGATATTACTCAGTATCCTGTTTTCCCATGGATCCTTTCTGATTACAGTTCGAAGACTTTGGATCTTGCAGACCCTTCTTCTTATCGAGACCTTTCAAAGCCTGTTGGTGCTTTGAATTCTGATCGTCTGGAAAAATTTCAAGAGAGATATTCCAGCTTCGAGGACCCAGTTATACCCAAATTCCATTATGGTTCTCATTATTCCAGCGCTGGAACAGTGCTATATTATCTTGTTAGAGTTGAACCGTTTACAACTCTGTCAATTCAACTGCAAGGCGGAAAGTTTGATCATGCAGATCGGATGTTTTCAGATATTGCTTCTACTTGGAATGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCCGAGTTGTTCTACCTCCCTGAGATCTTAACCAATGAAAATTCAATCGATTTTGGTACAACACAAACAGGCGGAAAACTTGGTTCTGTCAAACTTCCACCATGGGCAGAAAACCCAATTGATTTCATTCATAAGCATCGGAAGGCTCTTGAAAGCGAACACGTATCTGCACATTTGCATGAATGGATTGATCTTATATTTGGGTATAAGCAACGTGGCAAAGAAGCTATATTGGCAAATAATGTTTTCTTCTACATTACCTATGAAGGGACTGTTGATATTGATAAGATATCAGACCCAGTACAACAACGTGCAACACAAGACCAGATTGCATACTTTGGTCAAACGCCATCGCAACTTCTTACCATCCCTCACTTGAAGAAGATGCCACTAGCAGATGTTCTTCATTTGCAGACCATCTTCCGGAACCCAAAAGAAGTCAAACAATATGCTGTTCCTGCTCCTGAGCGTTGCAATCTTCCTGCAGCTGGTATTCATGCATCTTCAGATACTGTCGTAATTGTTGATATGCATGCACCAGCAGCACATGTTGCACAGCACAAGTGGCAGCCGAACACTCCTGACGGTCAAGGTATGCCTTTCCTCTTTCAACACGGAAAGCCTGCAGCAAGCTCCACTGGTGGAGCATTTATGCGTATGTTCAAAGGGCCTGCTGGATCTGGTTCTGAGGATTGGCTTTTTCCTCAAGCGCTAGCATTTGCTACGTCTGGAATCAGAAGCTCGGCTATAGTTTCCATAACATGTGACAAAGAAGTCATCACTGGTGGGCATGTGGACAACAGTATCAAGCTAGTTTCATCAGATGGAGCAAAAACCTTGGAGACAGCCTTTGGCCACTGCGCTCCAGTCACTTGTCTTGGACTTTCACCTGATAGCAACTACCTTGTGACGGGATCCAGAGATACTACTGTTTTACTTTGGAGAGTACATAGAGCATTTACTTCTCGCTCAAGCAGCGTATCGGAGTCTTCTAGTGGGACACCAGGCACAACCAGCAATAGTAATTTATCACATATATTGGCAGACAAAAGCAGGAGGCGTCGTATTGAAGGCCCCATACATGTTCTTCGAGGCCACCAGAGGGAAATACTTTCTTGCTGTGTGAGCTCAGATCTTGGGATAGTTGTTTCATGCTCCCAATCATCAGATGTGCTCTTGCATTCTATAAGAAGAGGTCGGCTGATCAGAAGGCTGCCTGGTGTGGAGGCCCATGCTGTCTGCCTCTCATCTGAGGGAGTTGTATTGACTTGGAATAAAACACTCAATACTTTGAGTACCTTTACTCTTAATGGATCTCTCATTGCCAGAGCTCAGTTACCGGTCTCTGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATAGGAATAAACTTGTCTATAGAAAGTGATAGAACCTTCAGCGGCAGCTGGGATTCTAAGCTTAAGAACACAGAGTTTGAGGATCTTTCACTGGAGTCGGAGGGAACTGAAGAAATCAACAGATTGGACACTCCATCGCCTTCAATTTGCTTCCTGGATATTCACACACTGAAGGTTTTTCATATATTGAAGTTGGGAGAAGGAAGGGAGATCACATCTCTTGCTCTAAACACAGACAATACAAACCTTCTGGTGTCGACTGCAGATAAACAGTTGATAATTTTCACTGATCCAGCTTTGAGCTTGAAAGTGGTGGATCAGATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTAAGTCCCCTAATAAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

2984

Amino Acids

325.35

Weight (kDa)

5.54

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 684 - 990 2.5e-58 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1175 - 1309 1.2e-08 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2122 - 2219 1e-26 PH domain associated with Beige/BEACH
Beach PF02138 2247 - 2522 1.9e-121 Beige/BEACH domain
WD40_Prp19 PF24814 2640 - 2801 1.3e-06 Prp19 WD40 domain
NBCH_WD40 PF20426 2644 - 2854 4.1e-22 Neurobeachin beta propeller domain
Beta-prop_WDR3_1st PF25173 2646 - 2712 1.9e-06 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 2646 - 2714 1.6e-06 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2646 - 2784 1.6e-08 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2646 - 2725 2.2e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 2651 - 2725 3.5e-07 THOC3 beta-propeller domain
WD40 PF00400 2677 - 2709 2.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 3227, 3863, 6389
AarI CACCTGC 2 cut(s) 5299, 6250
AasI GACNNNNNNGTC 1 cut(s) 7958
Acc36I ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
AccB1I GGYRCC 3 cut(s) 2033, 5324, 6238
AccB7I CCANNNNNTGG 1 cut(s) 1113
AccBSI CCGCTC 1 cut(s) 5395
AccI GTMKAC 3 cut(s) 398, 6166, 8837
AccII CGCG 2 cut(s) 2643, 3984
AccIII TCCGGA 2 cut(s) 559, 7608
AcoI YGGCCR 4 cut(s) 1238, 5138, 5574, 8038
AcuI CTGAAG 9 cut(s) 641, 2763, 3195, 5658, 7176, 7674, 8602, 8709, 8771
AcvI CACGTG 2 cut(s) 4244, 5516
AcyI GRCGYC 2 cut(s) 3545, 8245
AdeI CACNNNGTG 1 cut(s) 1058
AfeI AGCGCT 3 cut(s) 3678, 7024, 7896
AflII CTTAAG 1 cut(s) 8642
AflIII ACRYGT 4 cut(s) 7345, 7732, 7946, 8266
AgeI ACCGGT 1 cut(s) 8524
AjiI CACGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 4 cut(s) 2614, 2646, 4978, 5010
Alw21I GWGCWC 8 cut(s) 920, 1396, 2896, 3418, 6571, 8315, 8361, 8518
Alw26I GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
Alw44I GTGCAC 3 cut(s) 1392, 3414, 6567
AlwNI CAGNNNCTG 5 cut(s) 182, 1313, 1340, 4469, 7697
Ama87I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
Aor13HI TCCGGA 2 cut(s) 559, 7608
Aor51HI AGCGCT 3 cut(s) 3678, 7024, 7896
ApaLI GTGCAC 3 cut(s) 1392, 3414, 6567
ArsI GACNNNNNNTTYG 4 cut(s) 410, 442, 4834, 4866
AseI ATTAAT 1 cut(s) 1127
AsiGI ACCGGT 1 cut(s) 8524
Asp700I GAANNNNTTC 7 cut(s) 804, 2748, 3202, 3759, 6714, 6951, 7182
AspLEI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
AsuC2I CCSGG 1 cut(s) 1681
AsuII TTCGAA 1 cut(s) 6866
AsuNHI GCTAGC 3 cut(s) 1897, 3155, 7897
AvaI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
AvaII GGWCC 6 cut(s) 1172, 1220, 1817, 2135, 6286, 6979
AxyI CCTNAGG 2 cut(s) 2038, 2316
BaeGI GKGCMC 3 cut(s) 1396, 3418, 6571
BaeI ACNNNNGTAYC 8 cut(s) 6249, 6282, 7686, 7719, 7972, 8005, 8100, 8133
BalI TGGCCA 3 cut(s) 1240, 5576, 8040
BamHI GGATCC 3 cut(s) 6034, 6846, 8099
BanI GGYRCC 3 cut(s) 2033, 5324, 6238
BanII GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
BauI CACGAG 1 cut(s) 2091
BbrPI CACGTG 2 cut(s) 4244, 5516
BbsI GAAGAC 9 cut(s) 210, 2352, 3843, 4224, 5208, 5879, 6875, 7164, 8166
Bbv12I GWGCWC 8 cut(s) 920, 1396, 2896, 3418, 6571, 8315, 8361, 8518
BceAI ACGGC 4 cut(s) 1218, 1743, 6095, 6680
BciVI GTATCC 2 cut(s) 46, 6840
BclI TGATCA 3 cut(s) 391, 7102, 8388
BcnI CCSGG 1 cut(s) 1681
BcoDI GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
BfoI RGCGCY 3 cut(s) 3680, 7026, 7898
BfrI CTTAAG 1 cut(s) 8642
BfuAI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
BfuI GTATCC 2 cut(s) 46, 6840
BglI GCCNNNNNGGC 2 cut(s) 341, 6116
BglII AGATCT 2 cut(s) 7209, 8317
BlpI GCTNAGC 2 cut(s) 1997, 4470
Bme18I GGWCC 6 cut(s) 1172, 1220, 1817, 2135, 6286, 6979
BmeT110I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
BmgBI CACGTC 1 cut(s) 413
BmrI ACTGGG 5 cut(s) 666, 1983, 2810, 6977, 7478
BmtI GCTAGC 3 cut(s) 1901, 3159, 7901
BmuI ACTGGG 5 cut(s) 666, 1983, 2810, 6977, 7478
BpiI GAAGAC 9 cut(s) 210, 2352, 3843, 4224, 5208, 5879, 6875, 7164, 8166
BpmI CTGGAG 9 cut(s) 424, 1160, 4037, 5244, 5328, 5922, 6593, 8034, 8693
Bpu10I CCTNAGC 2 cut(s) 3036, 7650
Bpu1102I GCTNAGC 2 cut(s) 1997, 4470
Bpu14I TTCGAA 1 cut(s) 6866
BpuMI CCSGG 1 cut(s) 1681
Bsa29I ATCGAT 1 cut(s) 7233
BsaAI YACGTR 3 cut(s) 4244, 5516, 7348
BsaBI GATNNNNATC 1 cut(s) 750
BsaHI GRCGYC 2 cut(s) 3545, 8245
BsaI GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
BsaWI WCCGGW 4 cut(s) 559, 3962, 7608, 8524
Bse118I RCCGGY 2 cut(s) 2691, 8524
Bse21I CCTNAGG 2 cut(s) 2038, 2316
Bse8I GATNNNNATC 1 cut(s) 750
BseAI TCCGGA 2 cut(s) 559, 7608
BseCI ATCGAT 1 cut(s) 7233
BseJI GATNNNNATC 1 cut(s) 750
BseRI GAGGAG 6 cut(s) 29, 2414, 5143, 5340, 5608, 5998
BseSI GKGCMC 3 cut(s) 1396, 3418, 6571
BseYI CCCAGC 2 cut(s) 5461, 8628
BsgI GTGCAG 5 cut(s) 2483, 3948, 4620, 5568, 7338
Bsh1236I CGCG 2 cut(s) 2643, 3984
BshNI GGYRCC 3 cut(s) 2033, 5324, 6238
BshTI ACCGGT 1 cut(s) 8524
BshVI ATCGAT 1 cut(s) 7233
BsiHKAI GWGCWC 8 cut(s) 920, 1396, 2896, 3418, 6571, 8315, 8361, 8518
BsiHKCI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
BsiSI CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
BslFI GGGAC 9 cut(s) 832, 1185, 1729, 4117, 4392, 4743, 7468, 8197, 8922
BsmAI GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
BsmBI CGTCTC 1 cut(s) 5965
BsmFI GGGAC 9 cut(s) 832, 1185, 1729, 4117, 4392, 4743, 7468, 8197, 8922
BsmI GAATGC 9 cut(s) 1029, 1048, 1309, 1547, 2716, 3874, 4180, 4575, 8365
Bso31I GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
BsoBI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
Bsp119I TTCGAA 1 cut(s) 6866
Bsp13I TCCGGA 2 cut(s) 559, 7608
Bsp1407I TGTACA 2 cut(s) 82, 896
Bsp1720I GCTNAGC 2 cut(s) 1997, 4470
Bsp19I CCATGG 3 cut(s) 1892, 6842, 7286
Bsp68I TCGCGA 1 cut(s) 2643
BspDI ATCGAT 1 cut(s) 7233
BspEI TCCGGA 2 cut(s) 559, 7608
BspFNI CGCG 2 cut(s) 2643, 3984
BspHI TCATGA 3 cut(s) 64, 2680, 5158
BspMAI CTGCAG 8 cut(s) 1321, 1336, 4435, 4462, 5512, 7672, 7813, 8845
BspMI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
BspOI GCTAGC 3 cut(s) 1901, 3159, 7901
BspT104I TTCGAA 1 cut(s) 6866
BspT107I GGYRCC 3 cut(s) 2033, 5324, 6238
BspTI CTTAAG 1 cut(s) 8642
BspTNI GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
BsrBI CCGCTC 1 cut(s) 5395
BsrFI RCCGGY 2 cut(s) 2691, 8524
BsrGI TGTACA 2 cut(s) 82, 896
BssAI RCCGGY 2 cut(s) 2691, 8524
BssNI GRCGYC 2 cut(s) 3545, 8245
BssSI CACGAG 1 cut(s) 2091
BssT1I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Bst2BI CACGAG 1 cut(s) 2091
Bst6I CTCTTC 7 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 8371
BstACI GRCGYC 2 cut(s) 3545, 8245
BstAFI CTTAAG 1 cut(s) 8642
BstAUI TGTACA 2 cut(s) 82, 896
BstBAI YACGTR 3 cut(s) 4244, 5516, 7348
BstBI TTCGAA 1 cut(s) 6866
BstDSI CCRYGG 5 cut(s) 1424, 1892, 6111, 6842, 7286
BstFNI CGCG 2 cut(s) 2643, 3984
BstH2I RGCGCY 3 cut(s) 3680, 7026, 7898
BstHHI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
BstMAI GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
BstSLI GKGCMC 3 cut(s) 1396, 3418, 6571
BstUI CGCG 2 cut(s) 2643, 3984
BstV2I GAAGAC 9 cut(s) 210, 2352, 3843, 4224, 5208, 5879, 6875, 7164, 8166
BstXI CCANNNNNNTGG 1 cut(s) 3893
Bsu15I ATCGAT 1 cut(s) 7233
Bsu36I CCTNAGG 2 cut(s) 2038, 2316
BsuI GTATCC 2 cut(s) 46, 6840
BsuTUI ATCGAT 1 cut(s) 7233
BtgI CCRYGG 5 cut(s) 1424, 1892, 6111, 6842, 7286
BtgZI GCGATG 4 cut(s) 926, 2409, 7521, 8700
BtrI CACGTC 1 cut(s) 413
BtsI GCAGTG 5 cut(s) 2226, 2262, 3416, 4443, 8041
BtuMI TCGCGA 1 cut(s) 2643
BveI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
CaiI CAGNNNCTG 5 cut(s) 182, 1313, 1340, 4469, 7697
CciI TCATGA 3 cut(s) 64, 2680, 5158
CfoI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
Cfr10I RCCGGY 2 cut(s) 2691, 8524
ClaI ATCGAT 1 cut(s) 7233
CseI GACGC 3 cut(s) 2400, 3534, 8234
CspAI ACCGGT 1 cut(s) 8524
CspCI CAANNNNNGTGG 4 cut(s) 2215, 2250, 6093, 6128
DraI TTTAAA 1 cut(s) 4006
DraIII CACNNNGTG 1 cut(s) 1058
DrdI GACNNNNNNGTC 1 cut(s) 7958
DseDI GACNNNNNNGTC 1 cut(s) 7958
EaeI YGGCCR 4 cut(s) 1238, 5138, 5574, 8038
Eam1104I CTCTTC 7 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 8371
EarI CTCTTC 7 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 8371
EciI GGCGGA 2 cut(s) 7107, 7272
Ecl136II GAGCTC 3 cut(s) 2894, 8313, 8516
Eco130I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Eco24I GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
Eco31I GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
Eco32I GATATC 2 cut(s) 6551, 7476
Eco47I GGWCC 6 cut(s) 1172, 1220, 1817, 2135, 6286, 6979
Eco47III AGCGCT 3 cut(s) 3678, 7024, 7896
Eco53kI GAGCTC 3 cut(s) 2894, 8313, 8516
Eco57I CTGAAG 9 cut(s) 641, 2763, 3195, 5658, 7176, 7674, 8602, 8709, 8771
Eco72I CACGTG 2 cut(s) 4244, 5516
Eco81I CCTNAGG 2 cut(s) 2038, 2316
Eco88I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
EcoICRI GAGCTC 3 cut(s) 2894, 8313, 8516
EcoO109I RGGNCCY 8 cut(s) 1172, 1787, 2135, 2312, 5554, 6979, 7853, 8258
EcoRI GAATTC 3 cut(s) 356, 5154, 6931
EcoRV GATATC 2 cut(s) 6551, 7476
EcoT14I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
EcoT22I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
EcoT38I GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
ErhI CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Esp3I CGTCTC 1 cut(s) 5965
FaqI GGGAC 9 cut(s) 832, 1185, 1729, 4117, 4392, 4743, 7468, 8197, 8922
FauI CCCGC 2 cut(s) 1994, 6793
FauNDI CATATG 3 cut(s) 316, 3649, 4507
FbaI TGATCA 3 cut(s) 391, 7102, 8388
FblI GTMKAC 3 cut(s) 398, 6166, 8837
FriOI GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
GlaI GCGC 7 cut(s) 3678, 3884, 3983, 5852, 7024, 7896, 8047
GsaI CCCAGC 2 cut(s) 5465, 8632
GsuI CTGGAG 9 cut(s) 424, 1160, 4037, 5244, 5328, 5922, 6593, 8034, 8693
HaeII RGCGCY 3 cut(s) 3680, 7026, 7898
HapII CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
HgaI GACGC 3 cut(s) 2400, 3534, 8234
HhaI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
Hin1I GRCGYC 2 cut(s) 3545, 8245
Hin6I GCGC 7 cut(s) 3677, 3883, 3982, 5851, 7023, 7895, 8046
HinP1I GCGC 7 cut(s) 3677, 3883, 3982, 5851, 7023, 7895, 8046
HincII GTYRAC 4 cut(s) 223, 2815, 5788, 8838
HindII GTYRAC 4 cut(s) 223, 2815, 5788, 8838
HindIII AAGCTT 5 cut(s) 2531, 4707, 5408, 8639, 8909
HpaII CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
Hpy99I CGWCG 6 cut(s) 1366, 1755, 1758, 2055, 3550, 8250
Hsp92I GRCGYC 2 cut(s) 3545, 8245
HspAI GCGC 7 cut(s) 3677, 3883, 3982, 5851, 7023, 7895, 8046
Kpn2I TCCGGA 2 cut(s) 559, 7608
KroI GCCGGC 1 cut(s) 2691
KroNI GCCGGC 1 cut(s) 2693
Ksp22I TGATCA 3 cut(s) 391, 7102, 8388
MbiI CCGCTC 1 cut(s) 5395
MfeI CAATTG 4 cut(s) 1812, 6105, 6303, 7302
MlsI TGGCCA 3 cut(s) 1240, 5576, 8040
MluNI TGGCCA 3 cut(s) 1240, 5576, 8040
MlyI GAGTC 6 cut(s) 1172, 1959, 2576, 4057, 8180, 8684
MmeI TCCRAC 4 cut(s) 4785, 5378, 5797, 8658
Mox20I TGGCCA 3 cut(s) 1240, 5576, 8040
Mph1103I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
MroI TCCGGA 2 cut(s) 559, 7608
MroNI GCCGGC 1 cut(s) 2691
MroXI GAANNNNTTC 7 cut(s) 804, 2748, 3202, 3759, 6714, 6951, 7182
MscI TGGCCA 3 cut(s) 1240, 5576, 8040
MslI CAYNNNNRTG 9 cut(s) 449, 860, 1913, 2600, 4825, 4889, 4951, 6012, 7362
Msp20I TGGCCA 3 cut(s) 1240, 5576, 8040
MspCI CTTAAG 1 cut(s) 8642
MspI CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
MunI CAATTG 4 cut(s) 1812, 6105, 6303, 7302
Mva1269I GAATGC 9 cut(s) 1029, 1048, 1309, 1547, 2716, 3874, 4180, 4575, 8365
MvnI CGCG 2 cut(s) 2643, 3984
NaeI GCCGGC 1 cut(s) 2693
NciI CCSGG 1 cut(s) 1681
NcoI CCATGG 3 cut(s) 1892, 6842, 7286
NdeI CATATG 3 cut(s) 316, 3649, 4507
NgoMIV GCCGGC 1 cut(s) 2691
NheI GCTAGC 3 cut(s) 1897, 3155, 7897
NmeAIII GCCGAG 1 cut(s) 7907
NruI TCGCGA 1 cut(s) 2643
NsiI ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
NspV TTCGAA 1 cut(s) 6866
PaeI GCATGC 5 cut(s) 1547, 2047, 4834, 4888, 7721
PaeR7I CTCGAG 1 cut(s) 777
PagI TCATGA 3 cut(s) 64, 2680, 5158
PaqCI CACCTGC 2 cut(s) 5299, 6250
PciI ACATGT 3 cut(s) 7732, 7946, 8266
PcsI WCGNNNNNNNCGW 1 cut(s) 1756
PctI GAATGC 9 cut(s) 1029, 1048, 1309, 1547, 2716, 3874, 4180, 4575, 8365
PdiI GCCGGC 1 cut(s) 2693
PdmI GAANNNNTTC 7 cut(s) 804, 2748, 3202, 3759, 6714, 6951, 7182
PflMI CCANNNNNTGG 1 cut(s) 1113
PfoI TCCNGGA 2 cut(s) 44, 8733
PinAI ACCGGT 1 cut(s) 8524
PleI GAGTC 6 cut(s) 1171, 1959, 2575, 4057, 8179, 8683
PmaCI CACGTG 2 cut(s) 4244, 5516
PmlI CACGTG 2 cut(s) 4244, 5516
PpsI GAGTC 6 cut(s) 1171, 1959, 2575, 4057, 8179, 8683
Ppu21I YACGTR 3 cut(s) 4244, 5516, 7348
PpuMI RGGWCCY 3 cut(s) 1172, 2135, 6979
PscI ACATGT 3 cut(s) 7732, 7946, 8266
PshBI ATTAAT 1 cut(s) 1127
PsiI TTATAA 3 cut(s) 3227, 3863, 6389
Psp124BI GAGCTC 3 cut(s) 2896, 8315, 8518
Psp5II RGGWCCY 3 cut(s) 1172, 2135, 6979
PspCI CACGTG 2 cut(s) 4244, 5516
PspFI CCCAGC 2 cut(s) 5461, 8628
PspPPI RGGWCCY 3 cut(s) 1172, 2135, 6979
PstI CTGCAG 8 cut(s) 1321, 1336, 4435, 4462, 5512, 7672, 7813, 8845
PstNI CAGNNNCTG 5 cut(s) 182, 1313, 1340, 4469, 7697
PvuII CAGCTG 4 cut(s) 1337, 6221, 7673, 8628
RruI TCGCGA 1 cut(s) 2643
RseI CAYNNNNRTG 9 cut(s) 449, 860, 1913, 2600, 4825, 4889, 4951, 6012, 7362
SacI GAGCTC 3 cut(s) 2896, 8315, 8518
SalI GTCGAC 1 cut(s) 8836
SchI GAGTC 6 cut(s) 1172, 1959, 2576, 4057, 8180, 8684
Sfr274I CTCGAG 1 cut(s) 777
SfuI TTCGAA 1 cut(s) 6866
SinI GGWCC 6 cut(s) 1172, 1220, 1817, 2135, 6286, 6979
SlaI CTCGAG 1 cut(s) 777
SmiMI CAYNNNNRTG 9 cut(s) 449, 860, 1913, 2600, 4825, 4889, 4951, 6012, 7362
SphI GCATGC 5 cut(s) 1547, 2047, 4834, 4888, 7721
SspI AATATT 5 cut(s) 40, 628, 885, 3292, 5632
SstI GAGCTC 3 cut(s) 2896, 8315, 8518
StyI CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
TaqII GACCGA 1 cut(s) 273
TatI WGTACW 8 cut(s) 82, 896, 1181, 2474, 3218, 4517, 7486, 8131
TauI GCSGC 9 cut(s) 1558, 2101, 4082, 4469, 5140, 5273, 5486, 6311, 8625
TspGWI ACGGA 7 cut(s) 166, 1004, 2404, 4671, 5069, 6638, 7815
Van91I CCANNNNNTGG 1 cut(s) 1113
Vha464I CTTAAG 1 cut(s) 8642
VneI GTGCAC 3 cut(s) 1392, 3414, 6567
VpaK11BI GGWCC 6 cut(s) 1172, 1220, 1817, 2135, 6286, 6979
VspI ATTAAT 1 cut(s) 1127
XbaI TCTAGA 1 cut(s) 1579
XcmI CCANNNNNNNNNTGG 1 cut(s) 3146
XhoI CTCGAG 1 cut(s) 777
XmiI GTMKAC 3 cut(s) 398, 6166, 8837
XmnI GAANNNNTTC 7 cut(s) 804, 2748, 3202, 3759, 6714, 6951, 7182
Zsp2I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.