FvH4_7g12350

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008085
Physical Location & Seq
Reverse (-)
11189673 .. 11212012
22340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12350.t4

Sequence Viewer

Length: 9000 bp
ATGGAAGAAGAAGAGGAGAGAAAGGAGGTTGAAAATATTTCCAGCAAGGATACAGGTAATCATGAGCTGGTTAGTGGTGTACAGGAAAATGTTGATCCATCTCCCCCGGAAACTACTGGTGATACGGATGGTAAAGCTGATGCAGGACGGAATAGCATAACATTGCAAACAACTGATTCTGTTCCTAAGGTTTTGGATCAGGAAACTGCCGGTAATACTGATGGTAAAGCTGATGCAGGACGGAATAGCGTAACATTGCAAGTAACTGATCCTCTACATAAAGTTTTGGATGAGGACCAGTTCGAGCAGGTCAACTTGAAAGATCAAGATAAGACTGTTGGTGCATCTATAGGCAGTCATGTGGAATCAAATCGGACATCAAATTCAGACAATGCTAGACAATCATATGGTGGGTTTGAAGTTGCCTCACAGGCTTTGACTTCAGAATTTGATTCTTCTATGGTTGATGAGTTGCATGATGATCAGTCTGCCTGGAGCCCACGTCAAGACAGTCAATTTGGTCACTCTATCTACACATCCATGTCAGCTGGTAGTTTTGATTCTTCTTATTACGGGGATGCAGGTTATTCTCCGGTAGGTTCACCCCCGAAATCAAGGCAGAAACCTATTATGCCGAATGTATCTCCGGAGTTGCTACATTTGGTGGATTCTGCCATCATGGGAAAGCCTGAAAGTTTGGACAAACTGAAGAATATTGTCAGTGGTGTGGAGAGTTTCGGAACTGGGGAGGAAATGGAGAGCATTGCTTACTTGGTAGTTGATTCACTTATTGCAACAATGGGTGGTGTTGAAAGTTTTGAAGAAGATGAGGATAACAATCCTCCTAGCGTGATGCTAAACTCTCGGGCTGCCATTGTCGCAGGCGAACTTATTCCTTCGCTTCCTGGGTTCGGTGATAGTCATGCTATCATGTCCCCTCGCACACGAATGGTAAGGGGGCTACTTGCTATATTACGGGCTTGTACAAGAAACAGAGCGATGTGCTCGATGGCTGGTTTATTAGGAGTTCTTCTAAGGACAGCAGAGAAGATTTTTATGCAGGATGTTAATTCAACCGAGCAAATGAGATGGGATGGAACTCCTTTATGTTACTGCATTCAACACTTAGCAGGGCATTCACTTAGTGTTGTTGATATGCACAGATGGTTTCAAGTCATTACTCGGACGCTTACCACAATATGGGCAACCCGATTAATGCTTGCTCTGGAGAAGGCTATGGGTGGAAAGGAGTCGAGGGGACCAGCATGTACATTTGAGTTTGATGGTGAAAGCTCAGGTTTGCTTGGTCCAGGGGAGAGTCGTTGGCCATTTACCAATGGTTATGCTTTCGCAACATGGATTTACATTGAATCATTTGCAGATACATTGAATGCAGCAACTGCTGCAGCAGCAATTGCTGCAGCTGCTGCTGCCAAATCAGGTAAATCGTCAGCAATGTCGGCTGCTGCTGCTGCCAGTGCACTTGCTGGTGAAGGCACAGCACACATGCCGCGGTTGTTCAGTTTCTTATCTGCTGATAATCAGGGGTTAGAGGCATACTTCCATGCACAGTTTTTGGTGGTCGAATGTGGTAGTGGAAAGGGTAAGAAATCTTCGTTACATTTCACACATGCATTCAAGCCACAATGCTGGTACTTCATCGGTCTAGAGCATACTTGTAAGCAGGGGATTCTTGGGAAAGCAGAAAGTGAATTAAGATTGTATATTGATGGCTCGCTGTATGAAACTCGACCTTTTGAGTTCCCTCGGATCTCTAAGCCGCTTGCATTTTGCTGCATTGGGACAAACCCTCCTGCTACAATGGCTGGTTTACAACGTCGTCGCCGTCAATGCCCTTTATTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGGCCAGAAAGGATGTCACGTTTGGCTTCTAGGGGAGGGGATGCTCTTCCTTCTTTTGGTCATGGGGCAGGGCTGCCATGGCTAGCAACAAATTTGGAAGTGCAAAATATGGCAGAGGAAAGTTCACTTTTGGATGCAGAAATTGGCGGACTCATTCACCTATTCTACCACCCCAGTTTGCTTAGTGGGCGGTTCTGTCCAGATGCTTCCCCAAGTGGTGCCTCAGGAATGCTTCGACGACCAGCAGAGGTTCTTGGGCAGGTCCATATTGCTACACGAATGCGTCCTGTAGCAGCTCTGTGGGCCTTTTCCTATGGGGGTCCCATGTCTTTACTTCCTTTAGCAGTCAGCAATGTGGATAAAGTTACCCTTGAACCACAACAAGGGAATCCCTCTTTGTCTTTGGCTACCACTGCTCTTGCTGCTCCGATATTCAGAATAATTAGCACTGCTATTCAATACCCTTGGAACAATGAAGAGTTGTGTCGTACCAGAGGGCCTGAGGTTCTGTCAAGAATCTTGAACTATCTTTTGCTAACTTTATCTTCACTTTATGCTGGAAAACAAAATGGTGTCAGTGATGAGGAACTTGTTGCTTCTGTTTTATCACTATGTCAATCTCAGCAGAAGAACTATTCACTCAAGGTGCAGCTTTTCAGCACATTGCTGTTGGATCTAAAAGTTTGGAGCTTATGTAACTATGGGATACAAAAGAAGCTTCTTTCATCACTTGCAGACATGGTTTTTACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTTGACAGTTGCAGAAGATGCTATTGGACAATTCATGAAAAGGATTCAGTGAATACTTTTTCTCCTTCACGTAGTGAGGCAAGCCGGCCTGTGGGCGAGGTGAATGCTTTGGTTGATGAACTCTTAGTTATTATTGAACTTCTTCTAGTAGCAGCACCTCCTTCATTGGCTTCAGATGATGTTCGTTGTTTACTGGGGTTCATGGTTGATTGCCCACAACCAAATCAGGTGGCAAGGGTTTTGCATCTGATTTATAGATTGGTAGTACAGCCAAATACATCAAGAGCTCAGACATTTGCAGAGGCATTTATAGCTTCTGGTGGGATAGAGACCCTTCTTGTTTTGTTGCAACGAGAAGCCAAAGCAGGTGACTATAGTGTTCCAGAATCCATGACTAATAATGATGAAGTTTTGTCAGTCCAGCCACCTGAGCAAGATGGTAGTGTTGGAGGAGTTTCTGAGAAAAATCAGGATGATGAATTAGAAACATCAAAGGAAAAGGAAAATTCGCGGAAACTTGTTACATTCCAATCCCCTGAGGGAGCTAGCAGTCCGGTTTCTGTTTCTCCTGAGTTGAACATTGCAAGAATGACTTCTGCTTCAGAAAGCACATTTATAAAGAATCTGGGTGGTATAGATCTCTCAATTAGTGCTGATAATGCAAGGAATAATGTTTACAATATCGATAAAAGTGATGACGTTGTTGCCCGAATTATCGGGCTCTTAGGTGCTTTAGTTGCTTCTGGGTACTTGAAAATTGGTTCAACTGCTTCCTCAGATATGAGTAACAACATTATAGGTAACACACTGCCTGATGGAGGGGGTAGCATGTTTGAAGATAAAGTTTCCCTTTTGCTTTTTGCTTTACAGAAGGCTTTCCAAGCAGCACCGAACCGATTGTTGACCAGTAATGTGTATGCAGCTTTGTTGGGGGCGTCGATAAATGCCTCTTCAGCTGATGAGGCGTTGAACTTCTATGATTCCGGTCATCAATTTGAACATGTGCAACTTCTGTTGGTTCTCTTGCGGTCACTACCATTTGCACCCAAGGCACTGCAGACCCGAGCACTACAGGATCTTCTGTTTTTGGCTTGCAGTCAATCAGAAAATAGAAGCAGTCTTACAAACATGGAGGAATGGCCTGAATGGATTCTTGAGGTTCTCATCTCTAGCTATGAGATGGGTGCAAGCAAACATTCTGATTCCGCAAGGGACATAGAAGACCTCGTACACAACTTCCTGATTATAATGTTAGAACATTCCATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCTATAGTGGGTGGATCAAGCACCGGAGACCAACGGGTTAGGCGCGAGGAATCATTGCCCATCTTTAAAAGGAGGTTATTAGGTGGTTTGCTTGACTTCGCTGCTAGAGAACTCCAGTATCAGACTCAAGTTATTGCTGCGGCATCTGCGAATCTTGCATCAGAGTCTTTATCGCCAAAAGATGCCAAGGCAGAAGCAGAGAATGTGGCTCAACTCTCTGTAGCATTAGTAGAAAATGCTATAGTGATACTAATGCTGGTCGAGGATCATTTACGGTTACAGTGCAAACTGTCATCTGCTTCACGTGCAGCAGATAGTTCTCCATCTCCCCTTTCTCTTGTATCTCCCCTCAATAACCGATCAAATTCTTCAAATACAGTTGGTGGAGATTCCTTGGGAGCGTCGGGTGATTGTAGCTCCTTATCTGGTGATTCTGGGGGACTTCCTGTTGATCTTCTTGCTTCAATGGCCGATGCAAATGGTCAAGTATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCGGCTGAGCCTTATGGCTCTGTTTCTTGTGCTTTTGTATCATATGGAAGCTGTACTACGGATCTAGCAATGGGGTGGAAGTATAGGAGCAGATTATGGTATGGAGTAGGCATTCCTTCAAACACTGCAGCCTTTGGTGGCGGTGGCAGTGGTAGGGAATCATGGATGGCTGCACTGGAGAAGGATGCAAATGGAAACTGGATTGAACTTCCTTTGGTGAAAAAGTCTGTTGCAATGCTCCAAGCTTTACTATTAGATGATTCGGGACTTGGTGGGGGACTCGGCATAGGTGGTGGATCTGGTACTGGAATGGGAGGCATGGCAGCACTCTACCAGTTATTGGACAGTGACCAACCATTCCTATGCATGCTTAGAATGACACTTCTTTCTATGAGGGAAGAAGATAATGGTGAAGAGAGCATACTTATGACCAATGTAAGTATAGATGATGGGAAATCAGAAGGAAGGAAACCGCGATCAGCATTGCTATGGAGTGTGCTTTCACCTGTTCTAAACATGCCAATTTCTGATTCCAAGAGGCAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTATATCATGCTGTTGGAAGGGATGGAAAGCCTCTCCGTAAACTGTACCTTGAGGCCATTGTACCTCCATTTGTTGCTATTTTGAGGAGGTGGCGGCCACTTTTGGCTGGAATTCATGAACTCGCAACTGCTGACGGTAAGAATCCTCTTATGGTTGAAGACCGTGCGTTGGCTGCTGATGCCCTGCCAATTGAGGCTGCTCTTGCAATGATCTCTCCAGCTTGGGCTGCTGCTTTTGCATCTCCACCTGCTGCAATGGCACTGGCAATGATAGCTGCTGGTGCCTCTGGAGGAGAAACTCCAGTTCCTCCGACAACTTCTCAACTCAGGCGTGACTCTTCATTGCTTGAGCGGAAAACTACTAAGCTTCAAACATTTTCAAGCTTTCAAAAACCTTTAGAGCAACCGGACAAAGCACCAGCTCTACCAAAGGATAAGGCCGCTGCAAAGGCTGCTGCCTTGGCTGCAGCACGTGATCTTGAACGTAATAATAAAATTGGTTCTGGAAGGGGTCTCAGTGCTGTGGCAATGGCCACATCTGCACAGCGGAGGAGTGCTGGTGACATGGAGCGTGTGAAGAGATGGAATATTGCTGAAGCTATGGGAGTTGCGTGGATGGAATGTTTGCAGCCAGTTGATACCAAATCAGTCTATGGAAAAGATTTTAATGCTTTATCATATAAATTTATTGCTGTTCTTGTGGCTAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGTTCTCAAGTTGATCTAATAACTCGTCATCGTTTGGGCAAAGGAAGTCGTGCATGGCGCAAGCTCATGCATTGCTTGATTGAGATGAAGTGTCTTTTTGGGCCATCGGGAGACCAATTGTGCAATCAATCACCTGTTTTCTGGAAGCTAGATTTTATGGAAAGTTCTTCTAGGATGAGACGATGCGTGAGGAGGAATTACGAAGGTTCTGATCATTTTGGTGCTGCTGCCGATTTTGAGGATCATATTAAGACAAAAGAACAGGAAAATGTCATAAGCTCCTCAAATGCTCCTATATTGGCAGCCGAAGCGATTGCCATAGAGGCAGTAAACGAAGATGATGAACAAGGGGAAATTGAGAATATGGATGATAGAGCCTATGGTATTGAAGAGAGTGTGGAGAATCAGTCACGACTGTCTGAAACAGCTGATAAAAACCTGCAGGCACCTGCTGAATCTGATGATACTCAAGTTGCTGGTGAACCAGGCTTGGTCCAAAGTTCGTCACCAATTGCGGCTGGATATGTCCCTAGTGAACTTGATGAAAGAATTCTTCTTGAGCTTCCTTCATCAATGGTTCGGCCATTGAGGGTTATAAGTGGAACATTTCAGGTAACAAGTAGAAGAATAAATTTCATAGTTGATAACAGTGATATGAATGGTTCATTGGATGAACTAGATTGCAAGGATACGAGAGAAGAACATAAAGATCGTAGCTGGTGTATGTCATCCCTTCATCAAATATACAGCCGAAGATATCTCCTAAGAAGAAGTGCTCTGGAGCTATTTTTGGTTGATCGTTCAAACTTCTTCTTTGATTTTGGGAGTACTGAAGGACGAAGAAATGCATATCGAGCAATTGTTCAAGCACGGCCTCCCCATTTGAATAATATATATCTTGCAACTCAGAGACCTGAACAACTTCTGAAGAGAACACAGCTTATGGAGCGTTGGGCTAGGTGGGAGATCAGCAATTTCGAATATCTAATGCAGCTCAATACCCTTGCAGGGCGTAGTTACAATGATATTACTCAGTATCCTGTTTTCCCATGGATCCTTTCTGATTACAGTTCAAAGAGTTTGGATCTTGCAGACCCTTCTTCGTATCGAGACCTTTCAAAGCCTGTTGGTGCTTTGAATTCTAATCGTCTAGAAAAATTTCAAGAGAGATATTCCAGCTTCGAGGACCCAGTCATACCCAAATTCCATTATGGTTCTCATTATTCCAGTGCTGGAACAGTGCTATATTATCTTGTTAGAGTTGAACCGTTTACGACTCTGTCAATTCAACTGCAAGGGGGAAAGTTCGATCATGCAGATCGGATGTTTTCAGATATTGCTTCTACATGGAATGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCTGAGTTGTTCTACCTCCCTGAGATCTTAACCAATGAAAATTCAATCGATTTTGGTACAACACAAACAGGAGGAAAACTTGGTTCTGTCAAAATTCCACCATGGGCAGAAAACCCAATTGATTTCATTCATAAGCACCGGAAGGCTCTTGAAAGTGACCATGTGTCTGCGCATTTGCATGAATGGATTGATCTTATATTTGGTTATAAGCAACGTGGAAAAGAAGCTATATCGGCAAATAATGTTTTCTTCTACATTACCTATGAAGGGACAGTTGATATTGATAAGATATCAGACCCAGTACAACAACGTGCAACACAAGACCAGATTGCATACTTTGGTCAAACGCCATCACAACTTCTTACCATCCCTCACGTGAAGAAGATGCCACTAGCAGATGTACTTCATTTACAGACCATCTTCCGGAACCCAAAAGAAGTCAAACAATATACTGTTCCTGCTCCTGAGCGTTGCAATCTTCCTGCAGCTGGCATTCATGCATCTTCAGATAGTGTCATAATTGTTGATATGCATGCACCGGCAGCACATGTTGCTCTGCACAAGTGGCAGCCGAACACACCTGACGGTCAAGGTATGCCTTTCCTCTTTCAACACGGAAAGGCTGCAGCAAGCTCCACTGGTGGAGCATTTATGCGTATGTTCAAAGGGCCTGCTGGATCTGGTTCTGAGGATTGGCTTTTTCCTCAAGCACTAGCATTTGCTACATCTGGAATCAGAAGCTCATCTATAGTTTCCATAACATGTGACAAAGAAATCATTACTGATGGAGCAAAAACCTTGGAGACAGCCTTTGGCCACTGCGCTCCAGTCACTTGTCTTGGACTTTCACCTGATAGCAACTACCTTGTGACGGGATCTCGGGATACTACAGTTTTACTGTGGAGAATACATAGAGCATTTACTTCTCGCTCGAGCAGCGTATCAGAATCTTCTAGTGGGACAGGTACATCAGGCACAACCAGCAATAGTAATTTATCACATATATTGGCAGATAAAAGCAGGAGGCGTCGTATTGAAGGTCCCATACATGTTCTTCGAGGCCACCAGAGGGAAATACTCTCTTGCTGTGTGAGCTCAGATCTTGGAATAGTTGTTTCATGCTCCCAATCATCAGATGTGCTCTTGCATTCTATAAGAAGAGGTCGGCTGATCAGAAGGCTACCTGGTGTGGAGGCCCATGCAGTCTGCCTCTCTTCTGAGGGAGTTGTGTTGACTTGGAATAAAACACTCAACACTTTGAGTACCTATACTCTAAACGGGTCTCTCATTGCCAGAGCTCAGTTATCGGTCTCTGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATAGGAATAAACTCGTCTATGGATACTGATAGATCCTTCAGCAGCAGCTGGGATTCTAAGCTTAAAAACACAGACTTTGAAGATCTTTCTCGGGAGTCAGAGAAAACTGAGGAAATCAAAAGACTGGACACTCCATCACCTTCAGTTTGCTTCCTGGATATCCATACACTGGAGGTTTTTCATATATTGAAGTTGGGAGAAGGAAGGGAGATCACATCGCTTGCTCTAAACGCAGATAATACCAACCTTCTGGTGTCGACTGCAGATAAACAGTTGCTAATTTTCACTGACCCAGCTTTGAGCTTGAAAGTGGTGGATCAAATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTAAGTCCCCTAATAAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

3000

Amino Acids

326.76

Weight (kDa)

5.42

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 713 - 801 5.7e-08 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 805 - 978 1.1e-37 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1163 - 1294 2.1e-09 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2107 - 2204 3.8e-26 PH domain associated with Beige/BEACH
Beach PF02138 2232 - 2508 2e-121 Beige/BEACH domain
Beta-prop_WDR5 PF25175 2626 - 2793 8.7e-11 WDR5 beta-propeller domain
Beta-prop_WDR5 PF25175 2629 - 2699 1.5e-06 WDR5 beta-propeller domain
NBCH_WD40 PF20426 2630 - 2841 1.1e-21 Neurobeachin beta propeller domain
Beta-prop_WDR3_1st PF25173 2631 - 2696 2.9e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2631 - 2771 3.3e-09 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2631 - 2716 7.5e-07 WDHD1 first WD40 domain
WD40_Prp19 PF24814 2634 - 2841 1.3e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 2636 - 2708 6.6e-07 THOC3 beta-propeller domain
WD40 PF00400 2662 - 2694 2.6e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 3311, 3941, 6467, 7470
AarI CACCTGC 3 cut(s) 3050, 5377, 6328
Acc16I TGCGCA 1 cut(s) 7434
Acc36I ACCTGC 7 cut(s) 298, 572, 2152, 3050, 5377, 6318, 6328
AccB1I GGYRCC 3 cut(s) 2120, 5402, 6316
AccB7I CCANNNNNTGG 3 cut(s) 1200, 4882, 8794
AccBSI CCGCTC 1 cut(s) 5473
AccI GTMKAC 1 cut(s) 8882
AccII CGCG 4 cut(s) 1513, 3205, 4062, 5017
AccIII TCCGGA 2 cut(s) 646, 7686
AcoI YGGCCR 6 cut(s) 1325, 4485, 5216, 5652, 6452, 8077
AcvI CACGTG 3 cut(s) 4322, 5594, 7639
AcyI GRCGYC 2 cut(s) 3629, 8290
AdeI CACNNNGTG 2 cut(s) 1145, 2768
AflIII ACRYGT 4 cut(s) 3694, 7810, 8024, 8311
AhdI GACNNNNNGTC 1 cut(s) 7426
AjiI CACGTC 1 cut(s) 503
AjnI CCWGG 6 cut(s) 491, 904, 1309, 6355, 8446, 8778
AjuI GAANNNNNNNTTGG 6 cut(s) 2701, 2733, 5056, 5088, 6521, 6553
Alw21I GWGCWC 8 cut(s) 1007, 1483, 2983, 3763, 6649, 8360, 8406, 8563
Alw44I GTGCAC 1 cut(s) 1479
AlwNI CAGNNNCTG 4 cut(s) 1400, 1427, 4547, 8673
Ama87I CYCGRG 5 cut(s) 864, 3756, 8142, 8194, 8715
Aor13HI TCCGGA 2 cut(s) 646, 7686
ApaLI GTGCAC 1 cut(s) 1479
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AseI ATTAAT 1 cut(s) 1214
Asp700I GAANNNNTTC 9 cut(s) 891, 2835, 3286, 3569, 3843, 6420, 6792, 7029, 7260
AspLEI GCGC 5 cut(s) 3963, 4062, 5931, 7435, 8087
AsuC2I CCSGG 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 6849
AsuNHI GCTAGC 2 cut(s) 1984, 3239
AvaI CYCGRG 5 cut(s) 864, 3756, 8142, 8194, 8715
AvaII GGWCC 8 cut(s) 295, 1259, 1307, 2164, 2222, 6364, 7057, 8303
AxyI CCTNAGG 4 cut(s) 186, 2125, 2403, 3231
BaeGI GKGCMC 1 cut(s) 1483
BaeI ACNNNNGTAYC 6 cut(s) 4118, 4151, 6327, 6360, 8139, 8172
BalI TGGCCA 3 cut(s) 1327, 5654, 8079
BamHI GGATCC 1 cut(s) 6924
BanI GGYRCC 3 cut(s) 2120, 5402, 6316
BanII GRGCYC 5 cut(s) 500, 2983, 3417, 8360, 8563
BbrPI CACGTG 3 cut(s) 4322, 5594, 7639
BbsI GAAGAC 3 cut(s) 3921, 5286, 7242
Bbv12I GWGCWC 8 cut(s) 1007, 1483, 2983, 3763, 6649, 8360, 8406, 8563
BceAI ACGGC 2 cut(s) 1830, 6758
BcgI CGANNNNNNTGC 4 cut(s) 2780, 2814, 6167, 6201
BciT130I CCWGG 6 cut(s) 493, 906, 1311, 6357, 8448, 8780
BciVI GTATCC 6 cut(s) 43, 2601, 6553, 6918, 8140, 8641
BclI TGATCA 3 cut(s) 481, 6082, 8433
BcnI CCSGG 1 cut(s) 107
BfuAI ACCTGC 7 cut(s) 298, 572, 2152, 3050, 5377, 6318, 6328
BfuI GTATCC 6 cut(s) 43, 2601, 6553, 6918, 8140, 8641
BglI GCCNNNNNGGC 2 cut(s) 431, 6194
BglII AGATCT 4 cut(s) 3331, 7287, 8362, 8707
BlpI GCTNAGC 1 cut(s) 4548
BmcAI AGTACT 1 cut(s) 6700
Bme1390I CCNGG 7 cut(s) 107, 493, 906, 1311, 6357, 8448, 8780
Bme18I GGWCC 8 cut(s) 295, 1259, 1307, 2164, 2222, 6364, 7057, 8303
BmeRI GACNNNNNGTC 1 cut(s) 7426
BmeT110I CYCGRG 5 cut(s) 864, 3756, 8142, 8194, 8715
BmgBI CACGTC 1 cut(s) 503
BmrFI CCNGG 7 cut(s) 107, 493, 906, 1311, 6357, 8448, 8780
BmrI ACTGGG 5 cut(s) 753, 2070, 2897, 7055, 7556
BmtI GCTAGC 2 cut(s) 1988, 3243
BmuI ACTGGG 5 cut(s) 753, 2070, 2897, 7055, 7556
BpiI GAAGAC 3 cut(s) 3921, 5286, 7242
Bpu10I CCTNAGC 3 cut(s) 1294, 3123, 7728
Bpu1102I GCTNAGC 1 cut(s) 4548
Bpu14I TTCGAA 1 cut(s) 6849
BpuMI CCSGG 1 cut(s) 107
Bsa29I ATCGAT 2 cut(s) 3378, 7311
BsaAI YACGTR 4 cut(s) 2765, 4322, 5594, 7639
BsaBI GATNNNNATC 1 cut(s) 837
BsaHI GRCGYC 2 cut(s) 3629, 8290
BsaI GGTCTC 8 cut(s) 3017, 4038, 5639, 5976, 6775, 6975, 8550, 8578
BsaWI WCCGGW 8 cut(s) 592, 646, 3247, 3677, 4040, 5527, 7401, 7686
Bse118I RCCGGY 3 cut(s) 209, 2778, 7801
Bse21I CCTNAGG 4 cut(s) 186, 2125, 2403, 3231
Bse8I GATNNNNATC 1 cut(s) 837
BseAI TCCGGA 2 cut(s) 646, 7686
BseBI CCWGG 6 cut(s) 493, 906, 1311, 6357, 8448, 8780
BseCI ATCGAT 2 cut(s) 3378, 7311
BseJI GATNNNNATC 1 cut(s) 837
BseRI GAGGAG 7 cut(s) 29, 3159, 5221, 5427, 5686, 6076, 6142
BseSI GKGCMC 1 cut(s) 1483
BseYI CCCAGC 2 cut(s) 8673, 8917
BsgI GTGCAG 6 cut(s) 2570, 4026, 4344, 4698, 5646, 7805
Bsh1236I CGCG 4 cut(s) 1513, 3205, 4062, 5017
BshNI GGYRCC 3 cut(s) 2120, 5402, 6316
BshVI ATCGAT 2 cut(s) 3378, 7311
BsiHKAI GWGCWC 8 cut(s) 1007, 1483, 2983, 3763, 6649, 8360, 8406, 8563
BsiHKCI CYCGRG 5 cut(s) 864, 3756, 8142, 8194, 8715
BsmBI CGTCTC 1 cut(s) 6043
Bso31I GGTCTC 8 cut(s) 3017, 4038, 5639, 5976, 6775, 6975, 8550, 8578
BsoBI CYCGRG 5 cut(s) 864, 3756, 8142, 8194, 8715
Bsp119I TTCGAA 1 cut(s) 6849
Bsp13I TCCGGA 2 cut(s) 646, 7686
Bsp1407I TGTACA 3 cut(s) 79, 983, 1268
Bsp1720I GCTNAGC 1 cut(s) 4548
Bsp19I CCATGG 3 cut(s) 1979, 6920, 7364
BspDI ATCGAT 2 cut(s) 3378, 7311
BspEI TCCGGA 2 cut(s) 646, 7686
BspFNI CGCG 4 cut(s) 1513, 3205, 4062, 5017
BspHI TCATGA 3 cut(s) 61, 2728, 5236
BspMI ACCTGC 7 cut(s) 298, 572, 2152, 3050, 5377, 6318, 6328
BspOI GCTAGC 2 cut(s) 1988, 3243
BspQI GCTCTTC 1 cut(s) 1953
BspT104I TTCGAA 1 cut(s) 6849
BspT107I GGYRCC 3 cut(s) 2120, 5402, 6316
BspTNI GGTCTC 8 cut(s) 3017, 4038, 5639, 5976, 6775, 6975, 8550, 8578
BsrBI CCGCTC 1 cut(s) 5473
BsrFI RCCGGY 3 cut(s) 209, 2778, 7801
BsrGI TGTACA 3 cut(s) 79, 983, 1268
BssAI RCCGGY 3 cut(s) 209, 2778, 7801
BssNI GRCGYC 2 cut(s) 3629, 8290
BssT1I CCWWGG 9 cut(s) 1979, 2366, 3741, 4203, 4410, 5580, 6920, 7364, 8061
Bst2UI CCWGG 6 cut(s) 493, 906, 1311, 6357, 8448, 8780
BstACI GRCGYC 2 cut(s) 3629, 8290
BstAPI GCANNNNNTGC 8 cut(s) 1400, 1403, 1415, 1418, 1427, 2712, 5573, 7814
BstAUI TGTACA 3 cut(s) 79, 983, 1268
BstBAI YACGTR 4 cut(s) 2765, 4322, 5594, 7639
BstBI TTCGAA 1 cut(s) 6849
BstDSI CCRYGG 4 cut(s) 1511, 1979, 6920, 7364
BstENI CCTNNNNNAGG 1 cut(s) 3510
BstFNI CGCG 4 cut(s) 1513, 3205, 4062, 5017
BstHHI GCGC 5 cut(s) 3963, 4062, 5931, 7435, 8087
BstNI CCWGG 6 cut(s) 493, 906, 1311, 6357, 8448, 8780
BstSCI CCNGG 7 cut(s) 105, 491, 904, 1309, 6355, 8446, 8778
BstSLI GKGCMC 1 cut(s) 1483
BstUI CGCG 4 cut(s) 1513, 3205, 4062, 5017
BstV2I GAAGAC 3 cut(s) 3921, 5286, 7242
BstXI CCANNNNNNTGG 3 cut(s) 1650, 3971, 8875
Bsu15I ATCGAT 2 cut(s) 3378, 7311
Bsu36I CCTNAGG 4 cut(s) 186, 2125, 2403, 3231
BsuI GTATCC 6 cut(s) 43, 2601, 6553, 6918, 8140, 8641
BsuTUI ATCGAT 2 cut(s) 3378, 7311
BtgI CCRYGG 4 cut(s) 1511, 1979, 6920, 7364
BtgZI GCGATG 2 cut(s) 1013, 8826
BtrI CACGTC 1 cut(s) 503
BtsI GCAGTG 8 cut(s) 2313, 2349, 3500, 3746, 4521, 4665, 4696, 8080
BveI ACCTGC 7 cut(s) 298, 572, 2152, 3050, 5377, 6318, 6328
CaiI CAGNNNCTG 4 cut(s) 1400, 1427, 4547, 8673
CciI TCATGA 3 cut(s) 61, 2728, 5236
CfoI GCGC 5 cut(s) 3963, 4062, 5931, 7435, 8087
Cfr10I RCCGGY 3 cut(s) 209, 2778, 7801
Cfr42I CCGCGG 1 cut(s) 1514
ClaI ATCGAT 2 cut(s) 3378, 7311
CseI GACGC 5 cut(s) 1195, 2174, 3618, 4407, 8279
CsiI ACCWGGT 1 cut(s) 8446
CspCI CAANNNNNGTGG 4 cut(s) 2302, 2337, 2904, 2939
DraI TTTAAA 1 cut(s) 4084
DraIII CACNNNGTG 2 cut(s) 1145, 2768
DriI GACNNNNNGTC 1 cut(s) 7426
EaeI YGGCCR 6 cut(s) 1325, 4485, 5216, 5652, 6452, 8077
Eam1105I GACNNNNNGTC 1 cut(s) 7426
EciI GGCGGA 1 cut(s) 2064
Ecl136II GAGCTC 3 cut(s) 2981, 8358, 8561
Eco130I CCWWGG 9 cut(s) 1979, 2366, 3741, 4203, 4410, 5580, 6920, 7364, 8061
Eco24I GRGCYC 5 cut(s) 500, 2983, 3417, 8360, 8563
Eco31I GGTCTC 8 cut(s) 3017, 4038, 5639, 5976, 6775, 6975, 8550, 8578
Eco32I GATATC 3 cut(s) 6629, 7554, 8785
Eco47I GGWCC 8 cut(s) 295, 1259, 1307, 2164, 2222, 6364, 7057, 8303
Eco53kI GAGCTC 3 cut(s) 2981, 8358, 8561
Eco72I CACGTG 3 cut(s) 4322, 5594, 7639
Eco81I CCTNAGG 4 cut(s) 186, 2125, 2403, 3231
Eco88I CYCGRG 5 cut(s) 864, 3756, 8142, 8194, 8715
EcoICRI GAGCTC 3 cut(s) 2981, 8358, 8561
EcoNI CCTNNNNNAGG 1 cut(s) 3510
EcoO109I RGGNCCY 6 cut(s) 1874, 2222, 2399, 7057, 7931, 8303
EcoRI GAATTC 3 cut(s) 5232, 6420, 7009
EcoRII CCWGG 6 cut(s) 491, 904, 1309, 6355, 8446, 8778
EcoRV GATATC 3 cut(s) 6629, 7554, 8785
EcoT14I CCWWGG 9 cut(s) 1979, 2366, 3741, 4203, 4410, 5580, 6920, 7364, 8061
EcoT22I ATGCAT 6 cut(s) 1636, 4910, 5943, 6721, 7765, 7797
EcoT38I GRGCYC 5 cut(s) 500, 2983, 3417, 8360, 8563
ErhI CCWWGG 9 cut(s) 1979, 2366, 3741, 4203, 4410, 5580, 6920, 7364, 8061
Esp3I CGTCTC 1 cut(s) 6043
FalI AAGNNNNNCTT 6 cut(s) 2256, 2288, 3271, 3303, 3528, 3560
FauNDI CATATG 2 cut(s) 406, 4585
FbaI TGATCA 3 cut(s) 481, 6082, 8433
FblI GTMKAC 1 cut(s) 8882
FriOI GRGCYC 5 cut(s) 500, 2983, 3417, 8360, 8563
FspI TGCGCA 1 cut(s) 7434
GlaI GCGC 5 cut(s) 3962, 4061, 5930, 7434, 8086
GsaI CCCAGC 2 cut(s) 8677, 8921
HgaI GACGC 5 cut(s) 1195, 2174, 3618, 4407, 8279
HhaI GCGC 5 cut(s) 3963, 4062, 5931, 7435, 8087
Hin1I GRCGYC 2 cut(s) 3629, 8290
Hin6I GCGC 5 cut(s) 3961, 4060, 5929, 7433, 8085
HinP1I GCGC 5 cut(s) 3961, 4060, 5929, 7433, 8085
HincII GTYRAC 5 cut(s) 313, 3597, 5866, 8496, 8883
HindII GTYRAC 5 cut(s) 313, 3597, 5866, 8496, 8883
HindIII AAGCTT 6 cut(s) 2618, 4785, 5486, 5503, 8684, 8954
Hpy99I CGWCG 6 cut(s) 1842, 1845, 2142, 3634, 4423, 8295
Hsp92I GRCGYC 2 cut(s) 3629, 8290
HspAI GCGC 5 cut(s) 3961, 4060, 5929, 7433, 8085
KflI GGGWCCC 1 cut(s) 2222
Kpn2I TCCGGA 2 cut(s) 646, 7686
KroI GCCGGC 1 cut(s) 2778
KroNI GCCGGC 1 cut(s) 2780
Ksp22I TGATCA 3 cut(s) 481, 6082, 8433
KspI CCGCGG 1 cut(s) 1514
LguI GCTCTTC 1 cut(s) 1953
MabI ACCWGGT 1 cut(s) 8446
MbiI CCGCTC 1 cut(s) 5473
MfeI CAATTG 7 cut(s) 1413, 1899, 5310, 5987, 6381, 6729, 7380
MlsI TGGCCA 3 cut(s) 1327, 5654, 8079
MluNI TGGCCA 3 cut(s) 1327, 5654, 8079
MmeI TCCRAC 5 cut(s) 2553, 3121, 5116, 5456, 5875
Mox20I TGGCCA 3 cut(s) 1327, 5654, 8079
Mph1103I ATGCAT 6 cut(s) 1636, 4910, 5943, 6721, 7765, 7797
MroI TCCGGA 2 cut(s) 646, 7686
MroNI GCCGGC 1 cut(s) 2778
MroXI GAANNNNTTC 9 cut(s) 891, 2835, 3286, 3569, 3843, 6420, 6792, 7029, 7260
MscI TGGCCA 3 cut(s) 1327, 5654, 8079
MseI TTAA 9 cut(s) 1068, 1214, 1715, 1890, 4083, 5787, 6120, 7292, 8688
MslI CAYNNNNRTG 8 cut(s) 539, 947, 2687, 4903, 4967, 5029, 6090, 7440
Msp20I TGGCCA 3 cut(s) 1327, 5654, 8079
MspR9I CCNGG 7 cut(s) 107, 493, 906, 1311, 6357, 8448, 8780
MunI CAATTG 7 cut(s) 1413, 1899, 5310, 5987, 6381, 6729, 7380
MvaI CCWGG 6 cut(s) 493, 906, 1311, 6357, 8448, 8780
MvnI CGCG 4 cut(s) 1513, 3205, 4062, 5017
NaeI GCCGGC 1 cut(s) 2780
NciI CCSGG 1 cut(s) 107
NcoI CCATGG 3 cut(s) 1979, 6920, 7364
NdeI CATATG 2 cut(s) 406, 4585
NgoMIV GCCGGC 1 cut(s) 2778
NheI GCTAGC 2 cut(s) 1984, 3239
NmeAIII GCCGAG 1 cut(s) 4803
NsbI TGCGCA 1 cut(s) 7434
NsiI ATGCAT 6 cut(s) 1636, 4910, 5943, 6721, 7765, 7797
NspV TTCGAA 1 cut(s) 6849
PaeI GCATGC 2 cut(s) 4912, 7799
PaeR7I CTCGAG 1 cut(s) 8194
PagI TCATGA 3 cut(s) 61, 2728, 5236
PaqCI CACCTGC 3 cut(s) 3050, 5377, 6328
PciI ACATGT 4 cut(s) 3694, 7810, 8024, 8311
PciSI GCTCTTC 1 cut(s) 1953
PcsI WCGNNNNNNNCGW 1 cut(s) 1843
PdiI GCCGGC 1 cut(s) 2780
PdmI GAANNNNTTC 9 cut(s) 891, 2835, 3286, 3569, 3843, 6420, 6792, 7029, 7260
PflFI GACNNNGTC 2 cut(s) 7061, 7150
PflMI CCANNNNNTGG 3 cut(s) 1200, 4882, 8794
PfoI TCCNGGA 1 cut(s) 8778
PmaCI CACGTG 3 cut(s) 4322, 5594, 7639
PmlI CACGTG 3 cut(s) 4322, 5594, 7639
Ppu21I YACGTR 4 cut(s) 2765, 4322, 5594, 7639
PpuMI RGGWCCY 3 cut(s) 2222, 7057, 8303
PscI ACATGT 4 cut(s) 3694, 7810, 8024, 8311
PshBI ATTAAT 1 cut(s) 1214
PsiI TTATAA 4 cut(s) 3311, 3941, 6467, 7470
Psp124BI GAGCTC 3 cut(s) 2983, 8360, 8563
Psp5II RGGWCCY 3 cut(s) 2222, 7057, 8303
Psp6I CCWGG 6 cut(s) 491, 904, 1309, 6355, 8446, 8778
PspCI CACGTG 3 cut(s) 4322, 5594, 7639
PspFI CCCAGC 2 cut(s) 8673, 8917
PspGI CCWGG 6 cut(s) 491, 904, 1309, 6355, 8446, 8778
PspPPI RGGWCCY 3 cut(s) 2222, 7057, 8303
PspXI VCTCGAGB 1 cut(s) 8194
PstNI CAGNNNCTG 4 cut(s) 1400, 1427, 4547, 8673
PsyI GACNNNGTC 2 cut(s) 7061, 7150
PvuII CAGCTG 6 cut(s) 548, 1424, 3650, 6299, 7751, 8673
RseI CAYNNNNRTG 8 cut(s) 539, 947, 2687, 4903, 4967, 5029, 6090, 7440
SacI GAGCTC 3 cut(s) 2983, 8360, 8563
SacII CCGCGG 1 cut(s) 1514
SalI GTCGAC 1 cut(s) 8881
SapI GCTCTTC 1 cut(s) 1953
SaqAI TTAA 9 cut(s) 1068, 1214, 1715, 1890, 4083, 5787, 6120, 7292, 8688
SbfI CCTGCAGG 1 cut(s) 6315
ScaI AGTACT 1 cut(s) 6700
ScrFI CCNGG 7 cut(s) 107, 493, 906, 1311, 6357, 8448, 8780
SdaI CCTGCAGG 1 cut(s) 6315
SexAI ACCWGGT 1 cut(s) 8446
Sfr274I CTCGAG 1 cut(s) 8194
Sfr303I CCGCGG 1 cut(s) 1514
SfuI TTCGAA 1 cut(s) 6849
SgrBI CCGCGG 1 cut(s) 1514
SinI GGWCC 8 cut(s) 295, 1259, 1307, 2164, 2222, 6364, 7057, 8303
SlaI CTCGAG 1 cut(s) 8194
SmiMI CAYNNNNRTG 8 cut(s) 539, 947, 2687, 4903, 4967, 5029, 6090, 7440
SphI GCATGC 2 cut(s) 4912, 7799
Sse8387I CCTGCAGG 1 cut(s) 6315
SspI AATATT 3 cut(s) 37, 715, 5710
SstI GAGCTC 3 cut(s) 2983, 8360, 8563
StyD4I CCNGG 7 cut(s) 105, 491, 904, 1309, 6355, 8446, 8778
StyI CCWWGG 9 cut(s) 1979, 2366, 3741, 4203, 4410, 5580, 6920, 7364, 8061
TaqII GACCGA 2 cut(s) 1652, 8560
TatI WGTACW 8 cut(s) 79, 983, 1268, 2959, 4595, 6698, 7564, 7663
TauI GCSGC 7 cut(s) 1513, 1783, 4160, 4547, 5218, 5564, 6389
Tru1I TTAA 9 cut(s) 1068, 1214, 1715, 1890, 4083, 5787, 6120, 7292, 8688
Tru9I TTAA 9 cut(s) 1068, 1214, 1715, 1890, 4083, 5787, 6120, 7292, 8688
TspGWI ACGGA 6 cut(s) 140, 163, 256, 4616, 5147, 7893
Tth111I GACNNNGTC 2 cut(s) 7061, 7150
Van91I CCANNNNNTGG 3 cut(s) 1200, 4882, 8794
VneI GTGCAC 1 cut(s) 1479
VpaK11BI GGWCC 8 cut(s) 295, 1259, 1307, 2164, 2222, 6364, 7057, 8303
VspI ATTAAT 1 cut(s) 1214
XagI CCTNNNNNAGG 1 cut(s) 3510
XbaI TCTAGA 2 cut(s) 1666, 7021
XhoI CTCGAG 1 cut(s) 8194
XmiI GTMKAC 1 cut(s) 8882
XmnI GAANNNNTTC 9 cut(s) 891, 2835, 3286, 3569, 3843, 6420, 6792, 7029, 7260
ZrmI AGTACT 1 cut(s) 6700
Zsp2I ATGCAT 6 cut(s) 1636, 4910, 5943, 6721, 7765, 7797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.