Rroxscaffold_4G00304030

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008085
Physical Location & Seq
Forward (+)
24648743 .. 24673182
24440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304030.1

Sequence Viewer

Length: 9060 bp
ATGGAAGAAGAAGAGGAGAGGAAGGAGGTTGAAAATATTTCCAGGAAGGATACAAATAATCATGAGCTGGTTAGTGGTGTACAGGAAAATGTTGATCCATCTCCACAGGAAGCTACCGTTAATACTGATGGTAAAGCTGATGCAGGACGGAATAGCGTAACATTGCAGGTAACAGATTCTGTACCTAAAGTTTTGGATGAAGACCAATTCGAGCAGGTCAACTTGAAAGAACAAGATAAGAATGTTGGTGCATCTCATAGCAGTCATGTGGAATCAAATCGGTCATCAAATTCAGACAATGCCAGACAATCATACGGTGGGTTTGAAGTTGCCTCACGGGCATTTACATCAGAATTCGATACTTCTATGGTTGATGAAATGCATGATGATCAGTCTACCTGGAGCCCACGTCAGGACAGTCACTTTGGTCACTCTAACTACACATCTATGTCGGCTGCTAGTTTTGATTCTTCTTCTTATTATGGGGATGCAGGTTATTCTCCTGTTAGTTCACCCCCAAAACCAAGGCAGAAACCTGTTATGCCCAATGTATCTCCGGAGTTACTACATTTGGTGGATTCTGCCATCATGGGAAAGCCTGAAAGTTTGGAGAAACTGAAGAATATTGTTAGTGGTGTGGAGAGTTTTGGAACTGGGGAGGAAATGGAGAGCATTGCTTACTTGGTAGTTGATTCGCTTATTGCAACAATGGGTGGTGTTGAAAGTTATGAAGAAGATGAGGATAACAATCCTCCTAGCGTGATGCTAAACTCTCGAGCTGCCATTGTCGCAGGCGAACTTATTCCCTCGCTTCCTGGGTTTGGTGATAGTCATGCTATCATGTCCCCTCGCACACGAATGGTTAGGGGGCTGCTTGCAATATTACGGGCTTGTACAAGAAACAGAGCGATGTGCTCAATGGCTGGTTTATTAGGAGTTCTATTAAGGTCAGCAGAGAAGATTTTTATGCAGGATGTTAATTCAACGGAGCAAATGAGATGGGATGGAACTCCCTTATGTTACTGCATTCAACATTTAGCAGGGCATTCACTTAGTGTAGTTGATATGCACAGATGGTTTCAAGTCATTACTCGAACGCTTACCACAGTATGGGCAACCCGATTAATGCTTGCACTGGAGAAGGCAATGGGTGGAAAGGAGTCGAGGGGACCTGCATGTACTTTTGAGTTTGATGGTGAAAGTTCAGGTTTGCTTGGTCCAGGGGAAAGCCGTTGGCCGTTTGCCAATGGGTATGCGTTTGCAACATGGATTTACATTGAATCATTTGCAGATACATTGAATGCAGCAACTGCTGCAGCAGCGATTGCTGCAGCTGCTGCTGCCAAATCAGGAAAATCGTCGGCAATGTCGGCTGCTGCCGCTGCCAGTGCACTTGCTGGTGAAGGCACAGCACACATGCCACGGTTGTTCAGTTTCTTATCTGCTGACAATCAGGGGTTAGAGGCATACTTCCACGCACAGTTTTTGGTGGTCGAATGTGGTAGTGGAAAGGGTAAGAAATCTTCGTTACATTTTACGCATGCATTCAAGCCGCAATGCTGGTATTTCATTGGTCTAGAGCATACTTGCAAGCAAGGGCTGCTTGGGAAAGCAGACAGTGAATTAAGATTGTATATTGATGGTTCGCTGTACGAAACTCGACCTTTTGAGTTCCCCCGGATCTCTAAGCCACTTGCATTTTGCTGCATTGGGACAAATCCTCCTGCTACAATGGCTGGATTACAACGTCGTCGCCGTCAATGCCCTTTGTTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGTCCAGAAAGGATGTCACGTTTGGCTTCTAGGGGAGGGGACGCACTTCCTTCTTTTGGTCATGGGGCAGGGCTGCCATGGCTGGCAACAAACGTGGAAGTGCAAAATATGGCAGAGGAAAGTTCACTTTTGGATGCAGAAATTGGAGGACTCATTCACCTTTTCTACCACCCCAGTTTGCTTAGCGGGCGGTTCTGTCCAGATGCTTCCCCGAGTGGTGCCTCAGGCATGCTTCGACGACCAGCAGAGGTTCTTGGGCAGGTCCATATTGCTACACGAATGCGGCCTGTAGCAGCTCTATGGGCCTTTTCCTATGGGGGTCCTATGTCTTTACTTCCTTTAGCAGTTAGCAATGTGGATAAAGATACCCTTGAACCACAACAAGGGAATCCCTCTTTGTCTTTGGCTACCACTGCTCTTGCTGCTCCGATATTCCGAATAATTAGCACTGCTATTCGACACCCTTGGAACAGTGAAGAGTTGTGTCGTACCAAAGGGCCTGAGGTTCTGTCAAGAATCTTGAACTATCTTTTGCAAACTTTGTCTTCACTTTATGCTGGAAAACAAAACGGTGTGGGCGATGAGGAGCTTGTTGCTTCCGTTTTATCACTATGTCAATCTCAGCAGAAGAACTATGCACTCAAGGTGCAGCTTTTCAGTACATTGCTATTGGATCTAAAAGTTTGGAGCTTATGTAACTATGGGCTACAAAAGAAGCTTCTTTCATCACTTGCAGACATGGTTTTTACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTTGACAGTTGCAGAAGATGCTATTGGACAATTCGCGAAAAGGATTCAGTGAATACTTTTTCTCTTTCACTTCATGAGGCAAGCCGGCCTGTGGGTGAGGTGAATGCTTTGGTTGATGAACTCTTAGTCATTATTGAACTTCTTCTAGTAGCAGCACCTCCTTCATTGGCTTCAGATGACGTTCGTTGTTTACTGGGGTTCATGGTTGACTGCCCACAACCCAATCAGGTTGCAAGGGTTTTGCATCTGATTTATAGATTGGTGGTACAGCCAAATACATCAAGAGCTCAGACATTTGCAGAGGCATTTATAGCTTGTGGTGGGATAGAGACCCTTCTTGTTTTGTTGCAACGAGAAGCCAAAGCGGGTGACTACAGTGTTCCAGAATCCATGACCAAGAATGATGAAGTTTTGTCAGTCCAGCCACCTGAGCAAGATGGTAGTGTTGGGGGAGTTTCTGAAAAGAATCAGGATGATGAAGTAGAATCGTTGAAGGAAAAGGAAAATTTGCATGAGAAAGTTGTTGAATCCCAATCCCATGATGGAGCTAGCGGTCCGATTTCTGTTTCTCCTGAGTTGAACATTGCAAGAATGACTTCTGCTTCAGAAAGTACATTTATAAAGAATCTGGGTGGTATAGCTCTCTCAATTAGTGCTGATAATGCAAGGAATAATGTTTACAATATTGATAAAAGTGATGGGGTTGTTGCCCGAATCATTGGGCTCTTAGGTGCTTTAGTTGCTTCTGGGTACTTGAAAATTGGTTCAACTGCTTCCTCGGATATGACTAACAACCTTTTAGGAAGTGCACTGCATGATGGAGGGGGTAGCATGTTTGAAGATAAAGTTTCCCTTTTACTTTTTGCTTTACAGAAGGCTTTCCAAGCAGCACCAAACCGATTGTTGACCAGTAATGTGTATGCAGCATTGTTGGGGGCATCGATAAATGCCTCTTCAACTGATGAGGGGTTGAACTTCTATGATTCTGGTCATCAATTTGAACATTTGCAACTTCTTTTAGTTCTCTTGCGGTCACTTCCCTATGCACCCAAGGCTTTTCAAACCCGAGCGCTACAGGTTCCTAAGGATCTTCTGTTTTTGGCTTGCAGTCGGTCAGAAAATAGAAGCAGTCTTACAAACATGGAGGAATGGCCTGAATGGATTCTTGAGGTTCTCATCTCCAACTATGAGATGGGTGCAAGCAAACATTCTGATTCCGCACGATCAGGAGACATAGAAGACCTCATACACAACTTCCTGATTATAATGTTAGAGCATTCCATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCTATAGTGGGTGGATCAAGCACCGGAGACCAACGGGTTAGGCGCGAGGAATCATTACCCATATTTAAAAGGAGGCTATTAGGTGGTTTGCTGGACTTCGCAGCTAGAGAACTCCAGGTTCAGACTCAAGTTATTGCTGCGGCATCTGCTAATGTGGCATCAGGGACTTCATCACCAAAAGATGCCAAGGCAGAAGCAGAAAATGTGGCTCAACTTTCTGTAGCATTAGTAGAGAATGCAATAGTGATACTAATGCTTGTTGAGGATCATTTACGGTTACAGTGCAAACTGTCTTCTGTTTCACGTGCAACAGATAGTTCTCCATCTCCCCTTTCTCTTGTATCTCCCCTCAATAACCAGTCAAATTCATCGAATACAGTTGGTGGAGATTCATTTGGGGCTTTGGGTGATCGCAAATCCTTATCTAGTGATTCTGGGGGACTTCCTCTTGATCTTCTTGCTTCAATGGCTGATGCAAATGGTCAAGTATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCGGCTGAGCCTTATGGGTCTGTTTCATGTGCTTTTGTATCATATGGAAGCTGTACTGCGGATCTAGCAATGGGGTGGAAGTATAGGAGCAGATTGTGGTATGGAGTAGGCATTCCTTCAAACACAGCAGCCTTTGGTGGTGGTGGCAGCGGTAGGGAATCTTGGATGGCTGCACTGGAGAAGGATGCAAATGGAAACTGGATTGAGCTTCCTTTGGTGAAAAAGTCTGTTGCAATGCTCCAAGCTTTACTATTAGATGATTCGGGACTTGGTGGTGGACTTGGCATAGGTGGTGGATCTGGTACTGGAATGGGAGGCATGGCAGCACTCTACCAGTTATTGGACAGTGACCAACCATTCTTATGCATGCTCCGAATGACACTTCTTTCGATGAGAGAAGAAGATGATGGTGAAGAGAGCATGCTTATGAGCAATGTAAGCATAGATGTTGGGAAATCAGATGGGAGGAAACCACGATCAGCATTGCTGTGGAGTGTGCTTTCACCTGTTCTAAACATGCCAATTTCTGATTCCAAGAGGCAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTATATCATGCTGTTGGCAGGGACGGAAAGCCTCTCCGTAAACTTTACCTTGAGGCCATTGTACCTCCATTTGTTGCTGTTTTGAGGAGGTGGCGGCCAATTTTGGCTGGAATTCATGAACTTGCAACTGCTGATGGTCTGAATCCTCTTATGGTTGAAGACCGTGCATTGGCTGCTGATGCCCTTCCAATAGAGGCTGCTCTTGCAATGATCTCTCCAGCTTGGGCCGCTGCTTTTGCATCACCACCTGCTGCAATGGCACTGGCAATGATAGCTGCTGGTGCCTCTGGTGGAGAAACTCCAGCTCCTCCGACAACTTCTCAACTTAGGCGTGATTCCTCATTGCTTGAGCGGAAAACTAATAAGCTTCACACATTTTCGAGCTTCCAAAAACCTTTAGAGCAACCTGAAAAAGCCCCAGCTCTACCAAAGGATAAGGCTGCTGCAAAAGCTGCTGCCTTGGCTGCAGCACGTGATCTTGAACGTAATAATAAAATCGGTTCTGGAAGGGGCCTTAGTGCTGTGGCAATGGCCACATCTGCACAGCGGAGGAGTGCTGGTGACATGGAGCGTGTGAAGAGATGGAATATTGCTGAAGCAATGGAAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACCAGATCAGTCTATGGAAAAGATTTTAATGCTTTATCGTATAAATTTATTGCTGTTCTTGTGGCAAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGTTCTCAAGTTGATCTAATAACTCGTCATCGTTTGGGCAAAGGAAGTCGTGCATGGCGAAAGCTCATGCATTGCTTGATTGAGATGAAGTGTCTTCTTGGGCCATCTGGAGACCAATTATGCAATCAATCACCTGTTTTCTGGAAGCTAGATTTTATGGAAAGTTCTTCTAGGATGAGACGATGTGTGAGGAGGAATTACGAAGGTTCTGACCATTTTGGTGCTGCTGCCAATTTTGAGGATCCTATTAAGACAAAAGAACAGGAAAATGTCATAAGTTCCTCAAATGCTCCTATTTTGGCAGCAGAAGCAATTGCCGTGGAGGCAGTAAACGAAGATGATGAACAAGGGGAGATTGAAAATATGGATGGTAGACCCTATGGTATAGAAGAGAGTGGGGAGAATCATTCACGACTGCCTGAAACAGCTGAGAAAAGCCTGCTGGCACCTGCTGAATCTGATGATACTCAAGTTGCTGGTGAACCAGGCTTGGTCCAAAGTTCGTCACCAATTGCGGCTGGATATGTTCCTAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTCCTTCGTCAATGGTAACAAGTAGAAGAATAAATTTCATAGTTGATAACAGTGATGTGAATGGTTCATTGGATGAACTAGATTGCAAGGAAATGAGAGAAGAACATAAGGATCGTAGCTGGTCTATGTCATCCCTTCATCAAATATACAGCCGAAGATATCTCCTAAGAAGAAGTGCTCTGGAGCTATTTTTGGTTGATCGTTCAAACTTCTTCTTTGATTTTGGGAGACCTGAACAACTTCTGAAGAGAACACAACTTATGGAGCGTTGGGCTAGGTGGGAGATCAGCAATTTCGAATATCTAATGCAGCTCAATACCCTTGCGGGGCGTAGTTACAATGACATTACTCAGTATCCTGTTTTCCCATGGATCCTTTCTGATTACAGTTCAAAGACTTTGGATCTCGCAGACCCTTCTTCTTATCGAGACCTTTCAAAGCCTGTTGGTGCTTTGAATTCTGATCGTCTGGAAAAATTTCAAGAGAGATATTCCAGCTTTGAGGACCCAGTTATACCCAAATTCCATTATGGTTCTCATTATTCCAGCGCTGGAACAGTGCTATATTATCTTGTTAGAGTTGAACCGTTTACAACTCTGTCAATTCAACTGCAAGGCGGAAAGTTTGATCATGCGGATCGGATGTTTTCAGATATTGCTTCTACTTGGAATGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCCGAGTTGTTCTACCTCCCTGAGATCTTAACCAATGAAAATTCAATCGATTTTGGTACAACACAAACAGGCGGAAAACTTGGTTCTGTCAAACTTCCACCATGGGCAGAAAACCCACTTGATTTCGTTCATAAGCATCGGAAGGCTCTTGAAAGCGAACACGTATCTGCACATTTGCATGAATGGATTGATCTTATATTTGGGTATAAGCAACGTGGTAAAGAAGCTATATTGGCAAATAATGTTTTCTTCTACATTACCTATGAAGGGACTGTTGATATTGATAAGATATCAGACCCAGTACAACAACGTGCAACACAAGACCAGATTGCATACTTTGGTCAAACGCCATCGCAACTTCTTACCATCCCTCACTTGAAGAAGATGCCACTAGCAGATGTTCTTCATTTGCAGACCATCTTCCGGAACCCAAAAGAAGTCAAACAATATGCTGTTCCTGCTCCTGAGCGTTGCAATCTTCCTGCAGCTGGTATTCATGCATCTTCAGATACTGTCGTAATTGTTGATACGCATGCACCAGCAGCACATGTTGCACAGCACAAGTGGCAGCCGAACACTCCTGACGGTCAAGGTATGCCTTTCCTCTTTCAACACGGAAAGCCTGCAGCAAGCTCCACTGGTGGAGCATTTATGCGTATGTTCAAAGGGCCTGCTGGATCTGGTTCTGAGGATTGGCTTTTTCCTCAAGCGCTAGCATTTGCTACATCTGGAATCAGAAGCTCAACTATAGTTTCCATAACATGTGACAAAGAAGTCATCACTGGTGGGCATGTGGACAACAGTATCAAGCTAGTTTCATCAGATGGAGCAAAAACCTTGGAGACAGCCTTTGGCCACTGCGCTCCAGTCACTTGTCTTGGACTTTCACCTGATAGCAACTACCTTGTGACGGGATCCAGAGATACTACTGTTTTACTTTGGAGAATACATAGAGCATTTACTTCTCGCTCAAGCAGCGTATCAGAGTCTTCTAGTGGGACACCAGGCACAACCAGCAATAGTAATTTATCACATATATTGGCAGACAAAAGCAGGAGGCGTCGTATTGAAGGCCCCATACATGTACTTCGAGGCCACCAGAGGGAAATACTTTCTTGCTGTGTGAGCTCAGATCTTGGGATAGTTGTTTCATGCTCCCAATCATCTGATGTGCTCTTGCATTCTATAAGAAGAGGTCGGCTGATCAGAAGGCTGCCTGGTGTGGAGGCCCATGCTGTCTGCCTCTCATCTGAGGGAGTTGTATTGACTTGGAATAAAACACTCAATACTTTGAGTACCTTTACTCTTAATGGATCTCTCATTGCCAGAGCTCAGTTACCGGTCTCTGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATAGGAATAAACTCGTCTATAGAAACTGATAGAACCTTCAGCGGCAGCTGGGATTCTAAGCTTAAGAACACAGAGTTTGAGGATCTTTCACTGGAGTCAGAGGGAACTGAAGAAATCAACAGATTGGACACTCCATCGCCTTCAATTTGCTTCCTGGATATTCATACACTGAAGAACATAATAGAACTGTCCGGTTGGGTCTTGTCCACATTATTAAGTTTTTCTGCAAAAGAGATTATGTCCCCTATATCTTGTCCAATACGTTTTTCATATATTGAAGTTGGGAGAAGGAAGGAGATCACATCTCTTGCTCTAAACACAGACAATACAAACCTTCTGGTGTCGACTGCAGATAAACAGTTGATAATTTTCACTGATCCAGCTAATAACCATACTTGCTCCTCATTGGTTGCAGTTGAGCTTGAAAGTGGTGGATCAGATGCTCAAGCTTGGTTGGGAAGGCAGGAGAACCCTATATTGCATACTCAGAGGTCACGGGCGCGGTGCATTTTGTGCCATGGGTCGCTATGTGTCACCCCGAGTCACTTTCTAGGTCGCCATGTGCCATGGGTCTTATTGGCTACTGTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

3019

Amino Acids

329.09

Weight (kDa)

5.57

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 683 - 989 3.5e-59 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1173 - 1311 4.6e-07 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2126 - 2200 8.1e-18 PH domain associated with Beige/BEACH
Beach PF02138 2209 - 2484 2.1e-121 Beige/BEACH domain
Beta-prop_WDR5 PF25175 2604 - 2768 7.1e-11 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 2606 - 2673 1.5e-06 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 2606 - 2688 7.6e-07 WDHD1 first WD40 domain
NBCH_WD40 PF20426 2607 - 2816 7.3e-22 Neurobeachin beta propeller domain
Beta-prop_WDR3_2nd PF25172 2608 - 2746 1.4e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 2610 - 2763 1.5e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 2613 - 2687 4.6e-07 THOC3 beta-propeller domain
WD40 PF00400 2639 - 2671 2.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3224, 3869
AarI CACCTGC 2 cut(s) 5305, 6256
AasI GACNNNNNNGTC 1 cut(s) 7844
Acc36I ACCTGC 7 cut(s) 157, 205, 482, 1180, 2062, 5305, 6256
AccB1I GGYRCC 3 cut(s) 2030, 5330, 6244
AccB7I CCANNNNNTGG 2 cut(s) 1110, 4810
AccBSI CCGCTC 1 cut(s) 5401
AccI GTMKAC 3 cut(s) 395, 6172, 8810
AccII CGCG 3 cut(s) 2640, 3990, 8968
AccIII TCCGGA 2 cut(s) 556, 7494
AcoI YGGCCR 4 cut(s) 1235, 5144, 5580, 7924
AcvI CACGTG 2 cut(s) 4250, 5522
AcyI GRCGYC 1 cut(s) 8131
AdeI CACNNNGTG 1 cut(s) 1055
AfeI AGCGCT 3 cut(s) 3675, 6910, 7782
AflII CTTAAG 1 cut(s) 8528
AflIII ACRYGT 4 cut(s) 7231, 7618, 7832, 8152
AgeI ACCGGT 1 cut(s) 8410
AjiI CACGTC 1 cut(s) 410
AjuI GAANNNNNNNTTGG 8 cut(s) 2611, 2643, 4984, 5016, 6413, 6445, 8716, 8748
Alw21I GWGCWC 8 cut(s) 917, 1393, 2893, 3415, 6541, 8201, 8247, 8404
Alw26I GTCTC 9 cut(s) 2927, 3828, 3966, 5904, 5971, 6583, 6783, 7907, 8419
Alw44I GTGCAC 2 cut(s) 1389, 3411
AlwNI CAGNNNCTG 5 cut(s) 179, 1310, 1337, 4475, 7583
Ama87I CYCGRG 5 cut(s) 774, 2023, 3669, 7073, 9004
Aor13HI TCCGGA 2 cut(s) 556, 7494
Aor51HI AGCGCT 3 cut(s) 3675, 6910, 7782
ApaLI GTGCAC 2 cut(s) 1389, 3411
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 4840, 4872
AseI ATTAAT 1 cut(s) 1124
AsiGI ACCGGT 1 cut(s) 8410
Asp700I GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3765, 6600, 6837, 7068
AspLEI GCGC 7 cut(s) 3676, 3891, 3990, 6911, 7783, 7934, 8968
AsuC2I CCSGG 1 cut(s) 1678
AsuII TTCGAA 1 cut(s) 6657
AsuNHI GCTAGC 2 cut(s) 3152, 7783
AvaI CYCGRG 5 cut(s) 774, 2023, 3669, 7073, 9004
AvaII GGWCC 8 cut(s) 1169, 1217, 1814, 2074, 2132, 3158, 6292, 6865
AxyI CCTNAGG 3 cut(s) 2035, 2313, 3687
BaeGI GKGCMC 2 cut(s) 1393, 3415
BaeI ACNNNNGTAYC 8 cut(s) 6255, 6288, 7572, 7605, 7858, 7891, 7986, 8019
BalI TGGCCA 2 cut(s) 5582, 7926
BamHI GGATCC 3 cut(s) 6040, 6732, 7985
BanI GGYRCC 3 cut(s) 2030, 5330, 6244
BanII GRGCYC 5 cut(s) 407, 2893, 3330, 8201, 8404
BarI GAAGNNNNNNTAC 8 cut(s) 1507, 1539, 3721, 3753, 3834, 3866, 8133, 8165
BbrPI CACGTG 2 cut(s) 4250, 5522
BbsI GAAGAC 8 cut(s) 207, 2349, 3849, 4230, 5214, 5885, 7050, 8052
Bbv12I GWGCWC 8 cut(s) 917, 1393, 2893, 3415, 6541, 8201, 8247, 8404
BceAI ACGGC 4 cut(s) 1215, 1222, 1740, 6101
BciVI GTATCC 2 cut(s) 43, 6726
BclI TGATCA 3 cut(s) 388, 6988, 8274
BcnI CCSGG 1 cut(s) 1678
BcoDI GTCTC 9 cut(s) 2927, 3828, 3966, 5904, 5971, 6583, 6783, 7907, 8419
BfoI RGCGCY 3 cut(s) 3677, 6912, 7784
BfrI CTTAAG 1 cut(s) 8528
BfuAI ACCTGC 7 cut(s) 157, 205, 482, 1180, 2062, 5305, 6256
BfuI GTATCC 2 cut(s) 43, 6726
BglI GCCNNNNNGGC 2 cut(s) 338, 6122
BglII AGATCT 2 cut(s) 7095, 8203
BlpI GCTNAGC 2 cut(s) 1994, 4476
Bme18I GGWCC 8 cut(s) 1169, 1217, 1814, 2074, 2132, 3158, 6292, 6865
BmeT110I CYCGRG 5 cut(s) 774, 2023, 3669, 7073, 9004
BmgBI CACGTC 1 cut(s) 410
BmrI ACTGGG 5 cut(s) 663, 1980, 2807, 6863, 7364
BmtI GCTAGC 2 cut(s) 3156, 7787
BmuI ACTGGG 5 cut(s) 663, 1980, 2807, 6863, 7364
BpiI GAAGAC 8 cut(s) 207, 2349, 3849, 4230, 5214, 5885, 7050, 8052
Bpu10I CCTNAGC 2 cut(s) 3033, 7536
Bpu1102I GCTNAGC 2 cut(s) 1994, 4476
Bpu14I TTCGAA 1 cut(s) 6657
BpuMI CCSGG 1 cut(s) 1678
Bsa29I ATCGAT 2 cut(s) 3545, 7119
BsaAI YACGTR 3 cut(s) 4250, 5522, 7234
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 8131
BsaI GGTCTC 6 cut(s) 2927, 3966, 5904, 6583, 6783, 8419
BsaWI WCCGGW 5 cut(s) 556, 3968, 7494, 8410, 8657
Bse118I RCCGGY 2 cut(s) 2688, 8410
Bse21I CCTNAGG 3 cut(s) 2035, 2313, 3687
Bse8I GATNNNNATC 1 cut(s) 747
BseAI TCCGGA 2 cut(s) 556, 7494
BseCI ATCGAT 2 cut(s) 3545, 7119
BseJI GATNNNNATC 1 cut(s) 747
BseRI GAGGAG 7 cut(s) 29, 2411, 5149, 5346, 5614, 6004, 8857
BseSI GKGCMC 2 cut(s) 1393, 3415
BseYI CCCAGC 2 cut(s) 5467, 8514
BsgI GTGCAG 5 cut(s) 2480, 3954, 4626, 5574, 7224
Bsh1236I CGCG 3 cut(s) 2640, 3990, 8968
BshNI GGYRCC 3 cut(s) 2030, 5330, 6244
BshTI ACCGGT 1 cut(s) 8410
BshVI ATCGAT 2 cut(s) 3545, 7119
BsiHKAI GWGCWC 8 cut(s) 917, 1393, 2893, 3415, 6541, 8201, 8247, 8404
BsiHKCI CYCGRG 5 cut(s) 774, 2023, 3669, 7073, 9004
BsiSI CCGG 7 cut(s) 557, 1678, 2689, 3969, 7495, 8411, 8658
BsmAI GTCTC 9 cut(s) 2927, 3828, 3966, 5904, 5971, 6583, 6783, 7907, 8419
BsmBI CGTCTC 1 cut(s) 5971
Bso31I GGTCTC 6 cut(s) 2927, 3966, 5904, 6583, 6783, 8419
BsoBI CYCGRG 5 cut(s) 774, 2023, 3669, 7073, 9004
Bsp119I TTCGAA 1 cut(s) 6657
Bsp13I TCCGGA 2 cut(s) 556, 7494
Bsp1407I TGTACA 2 cut(s) 79, 893
Bsp1720I GCTNAGC 2 cut(s) 1994, 4476
Bsp19I CCATGG 5 cut(s) 1889, 6728, 7172, 8983, 9032
Bsp68I TCGCGA 1 cut(s) 2640
BspDI ATCGAT 2 cut(s) 3545, 7119
BspEI TCCGGA 2 cut(s) 556, 7494
BspFNI CGCG 3 cut(s) 2640, 3990, 8968
BspHI TCATGA 3 cut(s) 61, 2677, 5164
BspMAI CTGCAG 8 cut(s) 1318, 1333, 4441, 4468, 5518, 7558, 7699, 8818
BspMI ACCTGC 7 cut(s) 157, 205, 482, 1180, 2062, 5305, 6256
BspOI GCTAGC 2 cut(s) 3156, 7787
BspT104I TTCGAA 1 cut(s) 6657
BspT107I GGYRCC 3 cut(s) 2030, 5330, 6244
BspTI CTTAAG 1 cut(s) 8528
BspTNI GGTCTC 6 cut(s) 2927, 3966, 5904, 6583, 6783, 8419
BsrBI CCGCTC 1 cut(s) 5401
BsrFI RCCGGY 2 cut(s) 2688, 8410
BsrGI TGTACA 2 cut(s) 79, 893
BssAI RCCGGY 2 cut(s) 2688, 8410
BssNI GRCGYC 1 cut(s) 8131
Bst6I CTCTTC 8 cut(s) 6, 2283, 3562, 4878, 5621, 6183, 6602, 8257
BstACI GRCGYC 1 cut(s) 8131
BstAFI CTTAAG 1 cut(s) 8528
BstAUI TGTACA 2 cut(s) 79, 893
BstBAI YACGTR 3 cut(s) 4250, 5522, 7234
BstBI TTCGAA 1 cut(s) 6657
BstDSI CCRYGG 7 cut(s) 1421, 1889, 6117, 6728, 7172, 8983, 9032
BstFNI CGCG 3 cut(s) 2640, 3990, 8968
BstH2I RGCGCY 3 cut(s) 3677, 6912, 7784
BstHHI GCGC 7 cut(s) 3676, 3891, 3990, 6911, 7783, 7934, 8968
BstMAI GTCTC 9 cut(s) 2927, 3828, 3966, 5904, 5971, 6583, 6783, 7907, 8419
BstSLI GKGCMC 2 cut(s) 1393, 3415
BstUI CGCG 3 cut(s) 2640, 3990, 8968
BstV2I GAAGAC 8 cut(s) 207, 2349, 3849, 4230, 5214, 5885, 7050, 8052
BstXI CCANNNNNNTGG 1 cut(s) 3899
Bsu15I ATCGAT 2 cut(s) 3545, 7119
Bsu36I CCTNAGG 3 cut(s) 2035, 2313, 3687
BsuI GTATCC 2 cut(s) 43, 6726
BsuTUI ATCGAT 2 cut(s) 3545, 7119
BtgI CCRYGG 7 cut(s) 1421, 1889, 6117, 6728, 7172, 8983, 9032
BtgZI GCGATG 4 cut(s) 923, 2406, 7407, 8586
BtrI CACGTC 1 cut(s) 410
BtsI GCAGTG 5 cut(s) 2223, 2259, 3413, 4449, 7927
BtuMI TCGCGA 1 cut(s) 2640
BveI ACCTGC 7 cut(s) 157, 205, 482, 1180, 2062, 5305, 6256
CaiI CAGNNNCTG 5 cut(s) 179, 1310, 1337, 4475, 7583
CciI TCATGA 3 cut(s) 61, 2677, 5164
CfoI GCGC 7 cut(s) 3676, 3891, 3990, 6911, 7783, 7934, 8968
Cfr10I RCCGGY 2 cut(s) 2688, 8410
ClaI ATCGAT 2 cut(s) 3545, 7119
CpoI CGGWCCG 1 cut(s) 3158
CseI GACGC 2 cut(s) 1862, 8120
CspAI ACCGGT 1 cut(s) 8410
CspCI CAANNNNNGTGG 6 cut(s) 1887, 1922, 2212, 2247, 6099, 6134
CspI CGGWCCG 1 cut(s) 3158
DraI TTTAAA 1 cut(s) 4012
DraIII CACNNNGTG 1 cut(s) 1055
DrdI GACNNNNNNGTC 1 cut(s) 7844
DseDI GACNNNNNNGTC 1 cut(s) 7844
EaeI YGGCCR 4 cut(s) 1235, 5144, 5580, 7924
Eam1104I CTCTTC 8 cut(s) 6, 2283, 3562, 4878, 5621, 6183, 6602, 8257
EarI CTCTTC 8 cut(s) 6, 2283, 3562, 4878, 5621, 6183, 6602, 8257
EciI GGCGGA 2 cut(s) 6993, 7158
Ecl136II GAGCTC 3 cut(s) 2891, 8199, 8402
Eco24I GRGCYC 5 cut(s) 407, 2893, 3330, 8201, 8404
Eco31I GGTCTC 6 cut(s) 2927, 3966, 5904, 6583, 6783, 8419
Eco32I GATATC 2 cut(s) 6521, 7362
Eco47I GGWCC 8 cut(s) 1169, 1217, 1814, 2074, 2132, 3158, 6292, 6865
Eco47III AGCGCT 3 cut(s) 3675, 6910, 7782
Eco53kI GAGCTC 3 cut(s) 2891, 8199, 8402
Eco72I CACGTG 2 cut(s) 4250, 5522
Eco81I CCTNAGG 3 cut(s) 2035, 2313, 3687
Eco88I CYCGRG 5 cut(s) 774, 2023, 3669, 7073, 9004
EcoICRI GAGCTC 3 cut(s) 2891, 8199, 8402
EcoO109I RGGNCCY 8 cut(s) 1169, 1784, 2132, 2309, 5560, 6865, 7739, 8144
EcoRI GAATTC 3 cut(s) 353, 5160, 6817
EcoRV GATATC 2 cut(s) 6521, 7362
EcoT22I ATGCAT 5 cut(s) 384, 1546, 4838, 5871, 7573
EcoT38I GRGCYC 5 cut(s) 407, 2893, 3330, 8201, 8404
Esp3I CGTCTC 1 cut(s) 5971
FauI CCCGC 3 cut(s) 1991, 2962, 6679
FauNDI CATATG 1 cut(s) 4513
FbaI TGATCA 3 cut(s) 388, 6988, 8274
FblI GTMKAC 3 cut(s) 395, 6172, 8810
FriOI GRGCYC 5 cut(s) 407, 2893, 3330, 8201, 8404
GlaI GCGC 7 cut(s) 3675, 3890, 3989, 6910, 7782, 7933, 8967
GsaI CCCAGC 2 cut(s) 5471, 8518
HaeII RGCGCY 3 cut(s) 3677, 6912, 7784
HapII CCGG 7 cut(s) 557, 1678, 2689, 3969, 7495, 8411, 8658
HgaI GACGC 2 cut(s) 1862, 8120
HhaI GCGC 7 cut(s) 3676, 3891, 3990, 6911, 7783, 7934, 8968
Hin1I GRCGYC 1 cut(s) 8131
Hin6I GCGC 7 cut(s) 3674, 3889, 3988, 6909, 7781, 7932, 8966
HinP1I GCGC 7 cut(s) 3674, 3889, 3988, 6909, 7781, 7932, 8966
HincII GTYRAC 5 cut(s) 220, 2812, 3510, 5794, 8811
HindII GTYRAC 5 cut(s) 220, 2812, 3510, 5794, 8811
HindIII AAGCTT 5 cut(s) 2528, 4713, 5414, 8525, 8913
HpaII CCGG 7 cut(s) 557, 1678, 2689, 3969, 7495, 8411, 8658
Hpy99I CGWCG 5 cut(s) 1363, 1752, 1755, 2052, 8136
Hsp92I GRCGYC 1 cut(s) 8131
HspAI GCGC 7 cut(s) 3674, 3889, 3988, 6909, 7781, 7932, 8966
Kpn2I TCCGGA 2 cut(s) 556, 7494
KroI GCCGGC 1 cut(s) 2688
KroNI GCCGGC 1 cut(s) 2690
Ksp22I TGATCA 3 cut(s) 388, 6988, 8274
MbiI CCGCTC 1 cut(s) 5401
MfeI CAATTG 3 cut(s) 1809, 6111, 6309
MlsI TGGCCA 2 cut(s) 5582, 7926
MluNI TGGCCA 2 cut(s) 5582, 7926
MlyI GAGTC 7 cut(s) 1169, 1956, 2573, 4063, 8066, 8570, 9016
MmeI TCCRAC 3 cut(s) 3810, 5384, 5803
Mox20I TGGCCA 2 cut(s) 5582, 7926
Mph1103I ATGCAT 5 cut(s) 384, 1546, 4838, 5871, 7573
MroI TCCGGA 2 cut(s) 556, 7494
MroNI GCCGGC 1 cut(s) 2688
MroXI GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3765, 6600, 6837, 7068
MscI TGGCCA 2 cut(s) 5582, 7926
MslI CAYNNNNRTG 8 cut(s) 446, 857, 2597, 4831, 4895, 4957, 6018, 7248
Msp20I TGGCCA 2 cut(s) 5582, 7926
MspCI CTTAAG 1 cut(s) 8528
MspI CCGG 7 cut(s) 557, 1678, 2689, 3969, 7495, 8411, 8658
MunI CAATTG 3 cut(s) 1809, 6111, 6309
MvnI CGCG 3 cut(s) 2640, 3990, 8968
NaeI GCCGGC 1 cut(s) 2690
NciI CCSGG 1 cut(s) 1678
NcoI CCATGG 5 cut(s) 1889, 6728, 7172, 8983, 9032
NdeI CATATG 1 cut(s) 4513
NgoMIV GCCGGC 1 cut(s) 2688
NheI GCTAGC 2 cut(s) 3152, 7783
NruI TCGCGA 1 cut(s) 2640
NsiI ATGCAT 5 cut(s) 384, 1546, 4838, 5871, 7573
NspV TTCGAA 1 cut(s) 6657
PaeI GCATGC 5 cut(s) 1544, 2044, 4840, 4894, 7607
PaeR7I CTCGAG 1 cut(s) 774
PagI TCATGA 3 cut(s) 61, 2677, 5164
PaqCI CACCTGC 2 cut(s) 5305, 6256
PciI ACATGT 3 cut(s) 7618, 7832, 8152
PcsI WCGNNNNNNNCGW 3 cut(s) 1753, 2388, 5854
PdiI GCCGGC 1 cut(s) 2690
PdmI GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3765, 6600, 6837, 7068
PflMI CCANNNNNTGG 2 cut(s) 1110, 4810
PfoI TCCNGGA 2 cut(s) 41, 8619
PinAI ACCGGT 1 cut(s) 8410
PleI GAGTC 7 cut(s) 1168, 1956, 2572, 4063, 8065, 8569, 9015
PmaCI CACGTG 2 cut(s) 4250, 5522
PmlI CACGTG 2 cut(s) 4250, 5522
PpsI GAGTC 7 cut(s) 1168, 1956, 2572, 4063, 8065, 8569, 9015
Ppu21I YACGTR 3 cut(s) 4250, 5522, 7234
PpuMI RGGWCCY 3 cut(s) 1169, 2132, 6865
PscI ACATGT 3 cut(s) 7618, 7832, 8152
PshBI ATTAAT 1 cut(s) 1124
PsiI TTATAA 2 cut(s) 3224, 3869
Psp124BI GAGCTC 3 cut(s) 2893, 8201, 8404
Psp5II RGGWCCY 3 cut(s) 1169, 2132, 6865
PspCI CACGTG 2 cut(s) 4250, 5522
PspFI CCCAGC 2 cut(s) 5467, 8514
PspPPI RGGWCCY 3 cut(s) 1169, 2132, 6865
PstI CTGCAG 8 cut(s) 1318, 1333, 4441, 4468, 5518, 7558, 7699, 8818
PstNI CAGNNNCTG 5 cut(s) 179, 1310, 1337, 4475, 7583
PvuII CAGCTG 4 cut(s) 1334, 6227, 7559, 8514
RruI TCGCGA 1 cut(s) 2640
RseI CAYNNNNRTG 8 cut(s) 446, 857, 2597, 4831, 4895, 4957, 6018, 7248
Rsr2I CGGWCCG 1 cut(s) 3158
RsrII CGGWCCG 1 cut(s) 3158
SacI GAGCTC 3 cut(s) 2893, 8201, 8404
SalI GTCGAC 1 cut(s) 8809
SchI GAGTC 7 cut(s) 1169, 1956, 2573, 4063, 8066, 8570, 9016
Sfr274I CTCGAG 1 cut(s) 774
SfuI TTCGAA 1 cut(s) 6657
SinI GGWCC 8 cut(s) 1169, 1217, 1814, 2074, 2132, 3158, 6292, 6865
SlaI CTCGAG 1 cut(s) 774
SmiMI CAYNNNNRTG 8 cut(s) 446, 857, 2597, 4831, 4895, 4957, 6018, 7248
SphI GCATGC 5 cut(s) 1544, 2044, 4840, 4894, 7607
SspI AATATT 5 cut(s) 37, 625, 882, 3289, 5638
SstI GAGCTC 3 cut(s) 2893, 8201, 8404
TaqII GACCGA 2 cut(s) 270, 3705
TatI WGTACW 8 cut(s) 79, 893, 1178, 2471, 3215, 4523, 7372, 8155
TauI GCSGC 9 cut(s) 1382, 1555, 2098, 4088, 4475, 5146, 5279, 6317, 8511
TspGWI ACGGA 6 cut(s) 163, 1001, 2401, 5075, 5088, 7701
Van91I CCANNNNNTGG 2 cut(s) 1110, 4810
Vha464I CTTAAG 1 cut(s) 8528
VneI GTGCAC 2 cut(s) 1389, 3411
VpaK11BI GGWCC 8 cut(s) 1169, 1217, 1814, 2074, 2132, 3158, 6292, 6865
VspI ATTAAT 1 cut(s) 1124
XbaI TCTAGA 1 cut(s) 1576
XcmI CCANNNNNNNNNTGG 2 cut(s) 3143, 3793
XhoI CTCGAG 1 cut(s) 774
XmiI GTMKAC 3 cut(s) 395, 6172, 8810
XmnI GAANNNNTTC 8 cut(s) 801, 2745, 3199, 3482, 3765, 6600, 6837, 7068
Zsp2I ATGCAT 5 cut(s) 384, 1546, 4838, 5871, 7573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.