Rorug01G0216800

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008085
Physical Location & Seq
Forward (+)
31004987 .. 31010633
5647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216800.1

Sequence Viewer

Length: 4152 bp
ATGGCTCTGTTCCGAGGACACAAGGCCTCCCTTTCCAAATATACTACCTCTCCTTATCCATGTAGCTATCACGTGTTCTTGAGCTTCAGAGGTGAAGACACCCGAAAGAACTTCACTGATCACCTCTACACGGCTCTGGTCAATGCTGGATTTCATACTTTCCGGGATGACCCTGAACTCGAGAGAGGGGAAAATATCAAGGAAAAGCTTGAGAATGCCATTCAACAGTCACGAAGTTCTGTGATTGTGTTTTCAAAAGACTACACCTCTTCCAGATGGTGTCTGGACGAGCTTGTCATGATCCTTGAACGCAAGAGGACCTCCGATCATGTCGTGTTACCGGTTTTCTACGACCTTAATCCATCTCAACTGAGGAAGAAGGCAGAAAGCCTTGTGAGGAGGCACAGTGGAGTTCTTGCAAAAGCATTTGCCAGACTTGAAAAAAAGAAAAAAAAGCAATCGCCGGAGAAACTGAGTAGGTGGACGGAAGCACTTGTTGAAGCTGCAGATCTAGCAGGCCTGGTGTTAGAAAATCAAGATGATGGGCACGAGTCAAAGTTCATCCGAGAGATTGTTAGAGAGATTCAAGACAAGCTAGGACGTGTGCCCCTAAGTGATGTCCAGAAGGAATTAGAGGATAAGTTGTTATCTGTTAACCCTGTTCTTGATGACGCCGAGGGGAAGCAATTGAAATTCCAAACGACTGTGAAGCCATGGCTACATAATCTTAAAGAGGCTGTCTATGAGGCTGAGGACCTGTTGCAGGAGATCAAAACAGAAGCCTCGAGGCCAAAGATAGAACACGAAGACGAATATGGGAGTAGCACGTGTGAGGTACAAGAGCCCATCTCTACTCCATCTCATGCTTTTGACTCAGCTTTAATATACTCCAGGGTAGAGGAAGTTCTTGAAAGACTAGACGAAATTTCGAAGCAGACAAAAGATGTCCTGGATTCGGAAGTAACCGCTGGACAGAGAGTATCACAAACACTACCATCAACTTCTTTGGTAGAAAAGTCTGTGTGTGGAAGAGATGAAGAGAAAGAAACATTGGTTAAATTATTGCTATCAGATGATAAAATAGGTGTGATTCCTATTGTGGGTATGGGTGGGATTGGAAAGACCACCCTTGCCCAGTTTGTATACAATGATGTTAGAGTGAAGCAACATTTTCACCTCCAAGCATGGGTTTGCGTTTCAAAAGAATTTGATGCCCTTAGGATCTCACAACACATTTATGAGTCCCTCACCTCAAAAGCTTGCCAAATCACGAACCTAGATCTGCTTCAATCAAACCTGCATGACAATTTGATGGGGAAAAGGTTCTTCTTTGTTCTTGATGACATCTGGAACAAAAATTATAACCAGTTGGAATTCTTAAGACGTCCCCTTGAGTTTGGAGCACACGGAAGCAAGATTCTTATCACAACACGCGATGAAGATGTTTCACGTATGATGGGTAGCCTTGAAGCTCACTGTCTCATGCCAATGTCTGAGCAAGATAGCTGGTCATTATTTAAAAATCATGCCTTCAAAAATGCAGCTGTTGGTGCACACTCACATCTTGAAGAAATCGGTAGACAAATTGTTCGAAAGTGCAATGGTCTTCCTTTGGCTATTAAATCCCTTGGGGGTCTCTTATGTTCTAAATTGTTAGTGGACGAATGGGAAAGTATATTGAACAGTGACATGTGGGAGTTCTCGCCGGATGAGAGTGACATTCTGCCTTCTCTTTGGTTGAGCTATATGAATCTGCCTTCACATCTCAAGCGTTGTTTTGCACATTGTTCGATATTTTCCAAGAACTATAAGTTCAGAACATCAGAATTGGTTTACTTGTGGAAGGCTGAAGATCTCTTGCAACCTAAAAAAAACAAAACAGCAGAAGAAATCGGACAAGACTACTTCAATGATCTAATCTCCAGGTCATTTTTTCAGCTTTCATCAAGTCCCTATGGAACTACTTTCATCATGCATGACCTTATCAATGATTTAGCAAGCTTTGTATCCGGAGAATTTTGTCTTAGGTGGGAGGGAAGTGATTCACCCGACATTTTGAGCAGGACTCGTCATTTTTCATATAAGAGATATTATGATCATACTGATAACATTAGGATATTTGAGGATTTACAGCAAGCTAAATATTTGCGTACCTTTCTGATGAACGTAACTTCAAGCAAAGGATTAGATGAGCTGCTACCAAGATTACAGTGTCTAAGAATGCTCAATTTATCAGGGCGTATAGGGGAATTGCCTGATTCTATTAACAACTTGAAGCTTCTTAGGCACTTGGACTTGTCTTACAGTTTCATCAAAAAGTTGCCTGATACAATTTGTACTTTGTATAACTTGCAAGTATTGTTGTTGTCAAACTGTTGGGCCCTTACTGAACTGCCAGCCAACTTGGGAAGATTGATCAACTTGAGCCATCTGGATACTACAGGTATAATGTTAAAAAAGATGCCACCGGATATGGGTAACTTGAAAGACCTCCAGATGCTACCCGAGTTTGTTCTAGACAAAAGTACCGCAGGGGATAATTTGCCAGAGTTAAAGAAGCTTCAAAATTTGCGTGGAGGACTTTGTATCTCAAGGCTTGTGCATAGCAGCGGTTTGGAGGCCTACATACTGAGGGACAAGAAGTTTCTTAAGGAACTGGTTTTGGATTATTGGAGAGGATGGGATGTAAGTGAAGAAGAAGCAGAGTCTTACGATTTGGTGGAGGCAAAATGGGATTCAAGTGAAAAAAGCAATACTACTGTAGAACAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAAAGGCTTACAATTAAAAGTTATGGAGGCAAAATGTTTCCAGGTTGGTCGGAATATTATTCTTCCTCTGCTCTTGTTTCTCTTAAACTTGTTAATTGTCAGAATTGTATCTCCTTGCCACCATTGGGACAGCTACCTTCCCTCAGAGAACTTTTTATTTCTGGGTTGAGTGGGTGGCAAGAATGGTCTGATGTTGGAGGTGGCAATAATGAATGCGGGGTTTTTCCTAATCTTGTTCAACTTGAAGTATATGAGTGTCCCAATCTTACCGGGAGATTAGCGTCAGACAATCTCCCATCTCTTGTGTCTTTGACGGTATGGAGTTGCCCAGAATTCGAATGTTTTCCGGAAGATGGATTCCCGTCAAAGTTAAAATCACTTGACATCATCGGCTGTACAAAAGTGAATGCAAAGAGAGTGCAGAATCTGAACAAGGGTCTCCGAACACTCACCTCTCTTGAAGAATTGTCACTTGATTTTGACTGCGACGAAAAAGTAGATTGGTTTGCGGAGGAGCAGGAGGGGCTGTTTCCCAGCACTCTCACACATCTCAAGATCTGCCGTCTGAATTGTGAGACCATCGACGGCGCCAAGTGGTTTTGCCATCTCAACTCTCTTCGAGAATTGTTCATTAGGAATTGCCCTGCTCTGCGGTGCTTGCCAGATAGTGGGCTACCCTCTTCTCTTTCTCGTCTAAAAATCATTGAATGTCCTTTGCTTGAGAAACGGTGCCAAAGAGAGACGGGTGAAGACTGGCCCAAGATTGCTCACATCAATTCTAGGGTCATGCTTGAACTCATGATCGATGGGTTTGACAAGGACATGCAATATGAAGGAGAAACAGACCATTTCCATTTGCTACGCTGGGTAATGTGTCTTCTTTCTGCCCTGTTTCTTGATATGCAGCAGTTTCTTGATATGTTAAGACAGAGATGGGCCAAGCTTCTCTTCTTATCTGAACTTGCAGACTGTTCTTTATCTACTCCACTCATTCACACAGACACTTCTAGAGTTTCCAAGCAGAATGAAAATCACAGAGAGATGAGAGCCAATTTTGGGTCAGTGCGATATCAGCTCCCTGGATTTTACAAGTTTACAACTATATGCAGTGCTGCCGCTAAAGCATCTCATAATACTTGTAGCTGTTGGACTCTCATAAATTTGAGCATGTCACAGCAAGGAAATTCTTTGGCAGACTATCAACTCACTGACCCTTTAGGACATTCTGGAGGGCCACGAGAAGTGTCTTTACTATTGTTACTTCACCCTCACATAGCTGGGAAAACTTTTGCAGTGATGTCAAGATTACTATCAGCGGCTTCAAATGTCAAGGAGCAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

1383

Amino Acids

157.8

Weight (kDa)

5.9

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 208 6.7e-44 TIR domain
TIR_2 PF13676 25 - 124 4.6e-17 TIR domain
Rx_N PF18052 209 - 268 1.1e-11 Rx N-terminal domain
NB-ARC PF00931 345 - 514 1.4e-36 NB-ARC domain
WHD_DRP PF23559 598 - 666 1.2e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 731 - 1043 1.2e-19 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 849 - 991 3.4e-26 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 1062 - 1173 6.2e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1362
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 1387
AbsI CCTCGAGG 1 cut(s) 784
Acc36I ACCTGC 1 cut(s) 1305
AccB1I GGYRCC 2 cut(s) 3395, 3537
AccB7I CCANNNNNTGG 1 cut(s) 3476
AccI GTMKAC 2 cut(s) 1143, 1579
AccII CGCG 1 cut(s) 1434
AccIII TCCGGA 2 cut(s) 2009, 3154
AciI CCGC 8 cut(s) 966, 2529, 2610, 3024, 3317, 3460, 3924, 4124
AclWI GGATC 2 cut(s) 295, 1229
AcsI RAATTY 9 cut(s) 692, 924, 1205, 1373, 2015, 2566, 3140, 3967, 3991
AcuI CTGAAG 2 cut(s) 70, 1869
AcvI CACGTG 2 cut(s) 73, 828
AcyI GRCGYC 3 cut(s) 672, 1384, 3396
AfaI GTAC 5 cut(s) 837, 2152, 2338, 2527, 3205
AflII CTTAAG 2 cut(s) 1378, 2648
AflIII ACRYGT 4 cut(s) 72, 601, 827, 1689
AgeI ACCGGT 1 cut(s) 340
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 7 cut(s) 519, 890, 948, 1922, 2805, 2848, 3886
AjuI GAANNNNNNNTTGG 4 cut(s) 1034, 1066, 3740, 3772
Alw21I GWGCWC 2 cut(s) 1405, 1555
Alw26I GTCTC 5 cut(s) 1484, 1640, 3251, 3377, 3542
Alw44I GTGCAC 1 cut(s) 1551
AlwI GGATC 2 cut(s) 295, 1229
AlwNI CAGNNNCTG 1 cut(s) 3235
Ama87I CYCGRG 3 cut(s) 179, 784, 2504
Aor13HI TCCGGA 2 cut(s) 2009, 3154
AoxI GGCC 8 cut(s) 24, 517, 788, 2379, 2619, 3563, 3744, 4040
ApaI GGGCCC 1 cut(s) 2383
ApaLI GTGCAC 1 cut(s) 1551
ApeKI GCWGC 6 cut(s) 503, 1541, 2194, 2607, 3712, 3920
ApoI RAATTY 9 cut(s) 692, 924, 1205, 1373, 2015, 2566, 3140, 3967, 3991
ArsI GACNNNNNNTTYG 2 cut(s) 1572, 1604
AsiGI ACCGGT 1 cut(s) 340
Asp700I GAANNNNTTC 3 cut(s) 1322, 2041, 3150
AspLEI GCGC 1 cut(s) 3398
AspS9I GGNCC 7 cut(s) 318, 754, 2379, 2380, 3564, 3744, 4040
AsuC2I CCSGG 2 cut(s) 164, 3079
AsuHPI GGTGA 9 cut(s) 104, 113, 1166, 1240, 2037, 2789, 3250, 3566, 4064
AsuII TTCGAA 3 cut(s) 929, 1591, 3144
AvaI CYCGRG 3 cut(s) 179, 784, 2504
AvaII GGWCC 2 cut(s) 318, 754
AxyI CCTNAGG 1 cut(s) 1217
BaeGI GKGCMC 4 cut(s) 549, 609, 1555, 2383
BaeI ACNNNNGTAYC 2 cut(s) 2509, 2542
BanI GGYRCC 2 cut(s) 3395, 3537
BanII GRGCYC 2 cut(s) 846, 2383
BarI GAAGNNNNNNTAC 4 cut(s) 3669, 3701, 4041, 4073
BauI CACGAG 2 cut(s) 548, 4044
BbrPI CACGTG 2 cut(s) 73, 828
BbsI GAAGAC 5 cut(s) 102, 813, 1598, 3564, 3677
Bbv12I GWGCWC 2 cut(s) 1405, 1555
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 6 cut(s) 490, 1553, 2181, 2619, 3724, 3907
BceAI ACGGC 3 cut(s) 147, 3354, 3409
BcgI CGANNNNNNTGC 2 cut(s) 1770, 1804
BciT130I CCWGG 7 cut(s) 521, 892, 950, 1924, 2807, 2850, 3888
BciVI GTATCC 2 cut(s) 2017, 2428
BclI TGATCA 3 cut(s) 118, 2095, 2415
BcnI CCSGG 2 cut(s) 164, 3079
BcoDI GTCTC 5 cut(s) 1484, 1640, 3251, 3377, 3542
BfaI CTAG 7 cut(s) 512, 596, 917, 1277, 2516, 3588, 3816
BfmI CTRYAG 3 cut(s) 504, 2439, 2760
BfoI RGCGCY 1 cut(s) 3399
BfrI CTTAAG 2 cut(s) 1378, 2648
BfuAI ACCTGC 1 cut(s) 1305
BfuI GTATCC 2 cut(s) 2017, 2428
BglII AGATCT 4 cut(s) 508, 1279, 1852, 3363
BisI GCNGC 8 cut(s) 504, 1542, 2195, 2608, 3713, 3921, 3924, 4125
BlsI GCNGC 8 cut(s) 505, 1543, 2196, 2609, 3714, 3922, 3925, 4126
Bme1390I CCNGG 9 cut(s) 164, 521, 892, 950, 1924, 2807, 2850, 3079, 3888
Bme18I GGWCC 2 cut(s) 318, 754
BmeT110I CYCGRG 3 cut(s) 179, 784, 2504
BmgBI CACGTC 1 cut(s) 602
BmgT120I GGNCC 7 cut(s) 318, 754, 2379, 2380, 3564, 3744, 4040
BmiI GGNNCC 3 cut(s) 2381, 3397, 3539
BmrFI CCNGG 9 cut(s) 164, 521, 892, 950, 1924, 2807, 2850, 3079, 3888
BmrI ACTGGG 1 cut(s) 1129
BmsI GCATC 4 cut(s) 1201, 2451, 2487, 3941
BmuI ACTGGG 1 cut(s) 1129
BpiI GAAGAC 5 cut(s) 102, 813, 1598, 3564, 3677
BplI GAGNNNNNCTC 4 cut(s) 833, 865, 2050, 2082
BpmI CTGGAG 4 cut(s) 874, 1906, 2477, 4056
Bpu10I CCTNAGC 1 cut(s) 750
Bpu14I TTCGAA 3 cut(s) 929, 1591, 3144
BpuEI CTTGAG 9 cut(s) 100, 230, 1412, 1751, 2443, 2575, 2801, 3344, 3548
BpuMI CCSGG 2 cut(s) 164, 3079
Bsa29I ATCGAT 1 cut(s) 3612
BsaAI YACGTR 3 cut(s) 73, 828, 1451
BsaBI GATNNNNATC 2 cut(s) 1421, 4117
BsaHI GRCGYC 3 cut(s) 672, 1384, 3396
BsaI GGTCTC 3 cut(s) 1640, 3251, 3377
BsaJI CCNNGG 6 cut(s) 13, 675, 713, 891, 1627, 3886
BsaWI WCCGGW 4 cut(s) 340, 2009, 2467, 3154
BsaXI ACNNNNNCTCC 8 cut(s) 11, 34, 41, 64, 391, 421, 3320, 3350
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 4 cut(s) 1135, 1366, 2661, 3566
Bse21I CCTNAGG 1 cut(s) 1217
Bse3DI GCAATG 1 cut(s) 1606
Bse8I GATNNNNATC 2 cut(s) 1421, 4117
BseAI TCCGGA 2 cut(s) 2009, 3154
BseBI CCWGG 7 cut(s) 521, 892, 950, 1924, 2807, 2850, 3888
BseCI ATCGAT 1 cut(s) 3612
BseDI CCNNGG 6 cut(s) 13, 675, 713, 891, 1627, 3886
BseGI GGATG 5 cut(s) 172, 561, 1714, 2684, 2689
BseJI GATNNNNATC 2 cut(s) 1421, 4117
BseMI GCAATG 1 cut(s) 1606
BseMII CTCAG 7 cut(s) 362, 464, 741, 888, 1485, 2621, 2965
BseNI ACTGG 4 cut(s) 1135, 1366, 2661, 3566
BseRI GAGGAG 2 cut(s) 412, 3335
BseSI GKGCMC 4 cut(s) 549, 609, 1555, 2383
BseXI GCAGC 6 cut(s) 490, 1553, 2181, 2619, 3724, 3907
BseYI CCCAGC 3 cut(s) 3341, 3672, 4085
BsgI GTGCAG 1 cut(s) 3248
Bsh1236I CGCG 1 cut(s) 1434
BshFI GGCC 8 cut(s) 26, 519, 790, 2381, 2621, 3565, 3746, 4042
BshNI GGYRCC 2 cut(s) 3395, 3537
BshTI ACCGGT 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 3612
BsiHKAI GWGCWC 2 cut(s) 1405, 1555
BsiHKCI CYCGRG 3 cut(s) 179, 784, 2504
BsiSI CCGG 8 cut(s) 163, 341, 464, 1706, 2010, 2468, 3078, 3155
BslFI GGGAC 6 cut(s) 1228, 1371, 1935, 2648, 2949, 3051
BsmAI GTCTC 5 cut(s) 1484, 1640, 3251, 3377, 3542
BsmBI CGTCTC 1 cut(s) 3542
BsmFI GGGAC 6 cut(s) 1228, 1371, 1935, 2648, 2949, 3051
BsmI GAATGC 4 cut(s) 220, 2226, 3026, 3220
BsnI GGCC 8 cut(s) 26, 519, 790, 2381, 2621, 3565, 3746, 4042
Bso31I GGTCTC 3 cut(s) 1640, 3251, 3377
BsoBI CYCGRG 3 cut(s) 179, 784, 2504
Bsp119I TTCGAA 3 cut(s) 929, 1591, 3144
Bsp120I GGGCCC 1 cut(s) 2379
Bsp1286I GDGCHC 6 cut(s) 549, 609, 846, 1405, 1555, 2383
Bsp13I TCCGGA 2 cut(s) 2009, 3154
Bsp1407I TGTACA 1 cut(s) 3203
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 8 cut(s) 966, 2529, 2610, 3024, 3317, 3460, 3924, 4124
BspANI GGCC 8 cut(s) 26, 519, 790, 2381, 2621, 3565, 3746, 4042
BspCNI CTCAG 7 cut(s) 363, 465, 742, 887, 1486, 2622, 2964
BspDI ATCGAT 1 cut(s) 3612
BspEI TCCGGA 2 cut(s) 2009, 3154
BspFNI CGCG 1 cut(s) 1434
BspHI TCATGA 2 cut(s) 297, 3606
BspLI GGNNCC 3 cut(s) 2381, 3397, 3539
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 1305
BspPI GGATC 2 cut(s) 295, 1229
BspT104I TTCGAA 3 cut(s) 929, 1591, 3144
BspT107I GGYRCC 2 cut(s) 3395, 3537
BspTI CTTAAG 2 cut(s) 1378, 2648
BspTNI GGTCTC 3 cut(s) 1640, 3251, 3377
BsrDI GCAATG 1 cut(s) 1606
BsrFI RCCGGY 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 3203
BsrI ACTGG 4 cut(s) 1135, 1366, 2661, 3566
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 6 cut(s) 13, 675, 713, 891, 1627, 3886
BssNAI GTATAC 1 cut(s) 1144
BssNI GRCGYC 3 cut(s) 672, 1384, 3396
BssSI CACGAG 2 cut(s) 548, 4044
BssT1I CCWWGG 2 cut(s) 713, 1627
Bst1107I GTATAC 1 cut(s) 1144
Bst2BI CACGAG 2 cut(s) 548, 4044
Bst2UI CCWGG 7 cut(s) 521, 892, 950, 1924, 2807, 2850, 3888
Bst6I CTCTTC 6 cut(s) 274, 1024, 1032, 3429, 3493, 3761
BstACI GRCGYC 3 cut(s) 672, 1384, 3396
BstAFI CTTAAG 2 cut(s) 1378, 2648
BstAUI TGTACA 1 cut(s) 3203
BstBAI YACGTR 3 cut(s) 73, 828, 1451
BstBI TTCGAA 3 cut(s) 929, 1591, 3144
BstC8I GCNNGC 6 cut(s) 517, 1261, 1999, 2136, 2397, 3467
BstDSI CCRYGG 1 cut(s) 713
BstENI CCTNNNNNAGG 1 cut(s) 761
BstF5I GGATG 5 cut(s) 172, 561, 1714, 2684, 2689
BstFNI CGCG 1 cut(s) 1434
BstH2I RGCGCY 1 cut(s) 3399
BstHHI GCGC 1 cut(s) 3398
BstMAI GTCTC 5 cut(s) 1484, 1640, 3251, 3377, 3542
BstMWI GCNNNNNNNGC 8 cut(s) 512, 1550, 2284, 2785, 3331, 3466, 3880, 3929
BstNI CCWGG 7 cut(s) 521, 892, 950, 1924, 2807, 2850, 3888
BstNSI RCATGY 3 cut(s) 1693, 3634, 3979
BstSCI CCNGG 9 cut(s) 162, 519, 890, 948, 1922, 2805, 2848, 3077, 3886
BstSFI CTRYAG 3 cut(s) 504, 2439, 2760
BstSLI GKGCMC 4 cut(s) 549, 609, 1555, 2383
BstUI CGCG 1 cut(s) 1434
BstV1I GCAGC 6 cut(s) 490, 1553, 2181, 2619, 3724, 3907
BstV2I GAAGAC 5 cut(s) 102, 813, 1598, 3564, 3677
BstX2I RGATCY 5 cut(s) 508, 1221, 1279, 1852, 3363
BstYI RGATCY 5 cut(s) 508, 1221, 1279, 1852, 3363
BstZ17I GTATAC 1 cut(s) 1144
Bsu15I ATCGAT 1 cut(s) 3612
Bsu36I CCTNAGG 1 cut(s) 1217
BsuI GTATCC 2 cut(s) 2017, 2428
BsuRI GGCC 8 cut(s) 26, 519, 790, 2381, 2621, 3565, 3746, 4042
BsuTUI ATCGAT 1 cut(s) 3612
BtgI CCRYGG 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 1449
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 5 cut(s) 172, 561, 1714, 2684, 2689
BtsI GCAGTG 2 cut(s) 3922, 4107
BtsIMutI CAGTG 9 cut(s) 114, 412, 1474, 1690, 2216, 3876, 3922, 4014, 4107
BveI ACCTGC 1 cut(s) 1305
Cac8I GCNNGC 6 cut(s) 517, 1261, 1999, 2136, 2397, 3467
CaiI CAGNNNCTG 1 cut(s) 3235
CciI TCATGA 2 cut(s) 297, 3606
CfoI GCGC 1 cut(s) 3398
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 7 cut(s) 318, 754, 2379, 2380, 3564, 3744, 4040
ClaI ATCGAT 1 cut(s) 3612
CseI GACGC 2 cut(s) 680, 3078
Csp6I GTAC 5 cut(s) 836, 2151, 2337, 2526, 3204
CspAI ACCGGT 1 cut(s) 340
CviQI GTAC 5 cut(s) 836, 2151, 2337, 2526, 3204
DinI GGCGCC 1 cut(s) 3397
DraI TTTAAA 1 cut(s) 1519
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 6 cut(s) 274, 1024, 1032, 3429, 3493, 3761
EarI CTCTTC 6 cut(s) 274, 1024, 1032, 3429, 3493, 3761
Eco130I CCWWGG 2 cut(s) 713, 1627
Eco147I AGGCCT 3 cut(s) 26, 519, 2621
Eco24I GRGCYC 2 cut(s) 846, 2383
Eco31I GGTCTC 3 cut(s) 1640, 3251, 3377
Eco32I GATATC 1 cut(s) 3878
Eco47I GGWCC 2 cut(s) 318, 754
Eco57I CTGAAG 2 cut(s) 70, 1869
Eco72I CACGTG 2 cut(s) 73, 828
Eco81I CCTNAGG 1 cut(s) 1217
Eco88I CYCGRG 3 cut(s) 179, 784, 2504
EcoNI CCTNNNNNAGG 1 cut(s) 761
EcoO109I RGGNCCY 3 cut(s) 318, 754, 2380
EcoRI GAATTC 2 cut(s) 1373, 3140
EcoRII CCWGG 7 cut(s) 519, 890, 948, 1922, 2805, 2848, 3886
EcoRV GATATC 1 cut(s) 3878
EcoT14I CCWWGG 2 cut(s) 713, 1627
EcoT22I ATGCAT 1 cut(s) 1977
EcoT38I GRGCYC 2 cut(s) 846, 2383
EgeI GGCGCC 1 cut(s) 3397
EheI GGCGCC 1 cut(s) 3397
ErhI CCWWGG 2 cut(s) 713, 1627
Esp3I CGTCTC 1 cut(s) 3542
FalI AAGNNNNNCTT 2 cut(s) 3740, 3772
FaqI GGGAC 6 cut(s) 1228, 1371, 1935, 2648, 2949, 3051
FauI CCCGC 1 cut(s) 3017
FbaI TGATCA 3 cut(s) 118, 2095, 2415
FblI GTMKAC 2 cut(s) 1143, 1579
Fnu4HI GCNGC 8 cut(s) 504, 1542, 2195, 2608, 3713, 3921, 3924, 4125
FokI GGATG 5 cut(s) 179, 548, 1721, 2691, 2696
FriOI GRGCYC 2 cut(s) 846, 2383
Fsp4HI GCNGC 8 cut(s) 504, 1542, 2195, 2608, 3713, 3921, 3924, 4125
FspBI CTAG 7 cut(s) 512, 596, 917, 1277, 2516, 3588, 3816
GlaI GCGC 1 cut(s) 3397
GluI GCNGC 8 cut(s) 504, 1542, 2195, 2608, 3713, 3921, 3924, 4125
GsaI CCCAGC 3 cut(s) 3345, 3676, 4089
GsuI CTGGAG 4 cut(s) 874, 1906, 2477, 4056
HaeII RGCGCY 1 cut(s) 3399
HaeIII GGCC 8 cut(s) 26, 519, 790, 2381, 2621, 3565, 3746, 4042
HapII CCGG 8 cut(s) 163, 341, 464, 1706, 2010, 2468, 3078, 3155
HgaI GACGC 2 cut(s) 680, 3078
HhaI GCGC 1 cut(s) 3398
Hin1I GRCGYC 3 cut(s) 672, 1384, 3396
Hin6I GCGC 1 cut(s) 3396
HinP1I GCGC 1 cut(s) 3396
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 6 cut(s) 206, 1257, 1999, 2276, 2558, 3749
HpaI GTTAAC 1 cut(s) 655
HpaII CCGG 8 cut(s) 163, 341, 464, 1706, 2010, 2468, 3078, 3155
HphI GGTGA 9 cut(s) 104, 113, 1166, 1240, 2037, 2789, 3250, 3566, 4064
Hpy166II GTNNAC 8 cut(s) 483, 655, 1144, 1553, 1580, 1660, 1834, 3903
Hpy8I GTNNAC 8 cut(s) 483, 655, 1144, 1553, 1580, 1660, 1834, 3903
Hpy99I CGWCG 2 cut(s) 3299, 3395
HpyAV CCTTC 8 cut(s) 373, 619, 1540, 1737, 1767, 1837, 2955, 3635
HpyCH4IV ACGT 6 cut(s) 72, 601, 827, 1384, 1450, 2166
HpyF10VI GCNNNNNNNGC 8 cut(s) 512, 1550, 2284, 2785, 3331, 3466, 3880, 3929
HpySE526I ACGT 6 cut(s) 72, 601, 827, 1384, 1450, 2166
Hsp92I GRCGYC 3 cut(s) 672, 1384, 3396
HspAI GCGC 1 cut(s) 3396
KasI GGCGCC 1 cut(s) 3395
Kpn2I TCCGGA 2 cut(s) 2009, 3154
Ksp22I TGATCA 3 cut(s) 118, 2095, 2415
KspAI GTTAAC 1 cut(s) 655
LmnI GCTCC 5 cut(s) 1400, 2793, 3322, 3888, 4141
Lsp1109I GCAGC 6 cut(s) 490, 1553, 2181, 2619, 3724, 3907
LweI GCATC 4 cut(s) 1201, 2451, 2487, 3941
MaeI CTAG 7 cut(s) 512, 596, 917, 1277, 2516, 3588, 3816
MaeII ACGT 6 cut(s) 72, 601, 827, 1384, 1450, 2166
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 5 cut(s) 508, 1221, 1279, 1852, 3363
MhlI GDGCHC 6 cut(s) 549, 609, 846, 1405, 1555, 2383
Mly113I GGCGCC 1 cut(s) 3396
MlyI GAGTC 6 cut(s) 560, 866, 1250, 2059, 2714, 3952
MmeI TCCRAC 5 cut(s) 1350, 2815, 2838, 2983, 3935
Mph1103I ATGCAT 1 cut(s) 1977
MroI TCCGGA 2 cut(s) 2009, 3154
MroXI GAANNNNTTC 3 cut(s) 1322, 2041, 3150
MslI CAYNNNNRTG 2 cut(s) 1236, 1487
MspA1I CMGCKG 4 cut(s) 968, 1544, 2610, 4124
MspCI CTTAAG 2 cut(s) 1378, 2648
MspI CCGG 8 cut(s) 163, 341, 464, 1706, 2010, 2468, 3078, 3155
MspR9I CCNGG 9 cut(s) 164, 521, 892, 950, 1924, 2807, 2850, 3079, 3888
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 4 cut(s) 220, 2226, 3026, 3220
MvaI CCWGG 7 cut(s) 521, 892, 950, 1924, 2807, 2850, 3888
MvnI CGCG 1 cut(s) 1434
MwoI GCNNNNNNNGC 8 cut(s) 512, 1550, 2284, 2785, 3331, 3466, 3880, 3929
NarI GGCGCC 1 cut(s) 3396
NciI CCSGG 2 cut(s) 164, 3079
NcoI CCATGG 1 cut(s) 713
NlaIV GGNNCC 3 cut(s) 2381, 3397, 3539
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 5 cut(s) 228, 1685, 1715, 3276, 3978
NsiI ATGCAT 1 cut(s) 1977
NspI RCATGY 3 cut(s) 1693, 3634, 3979
NspV TTCGAA 3 cut(s) 929, 1591, 3144
PaeR7I CTCGAG 2 cut(s) 179, 784
PagI TCATGA 2 cut(s) 297, 3606
PceI AGGCCT 3 cut(s) 26, 519, 2621
PciI ACATGT 1 cut(s) 1689
PctI GAATGC 4 cut(s) 220, 2226, 3026, 3220
PdmI GAANNNNTTC 3 cut(s) 1322, 2041, 3150
PflMI CCANNNNNTGG 1 cut(s) 3476
PfoI TCCNGGA 2 cut(s) 162, 948
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 8 cut(s) 505, 1543, 2196, 2609, 3714, 3922, 3925, 4126
PleI GAGTC 6 cut(s) 559, 866, 1249, 2059, 2713, 3952
PluTI GGCGCC 1 cut(s) 3399
PmaCI CACGTG 2 cut(s) 73, 828
PmlI CACGTG 2 cut(s) 73, 828
PpsI GAGTC 6 cut(s) 559, 866, 1249, 2059, 2713, 3952
Ppu21I YACGTR 3 cut(s) 73, 828, 1451
PpuMI RGGWCCY 2 cut(s) 318, 754
PscI ACATGT 1 cut(s) 1689
PsiI TTATAA 1 cut(s) 1362
Psp5II RGGWCCY 2 cut(s) 318, 754
Psp6I CCWGG 7 cut(s) 519, 890, 948, 1922, 2805, 2848, 3886
PspCI CACGTG 2 cut(s) 73, 828
PspFI CCCAGC 3 cut(s) 3341, 3672, 4085
PspGI CCWGG 7 cut(s) 519, 890, 948, 1922, 2805, 2848, 3886
PspN4I GGNNCC 3 cut(s) 2381, 3397, 3539
PspOMI GGGCCC 1 cut(s) 2379
PspPI GGNCC 7 cut(s) 318, 754, 2379, 2380, 3564, 3744, 4040
PspPPI RGGWCCY 2 cut(s) 318, 754
PspXI VCTCGAGB 1 cut(s) 784
PsrI GAACNNNNNNTAC 2 cut(s) 888, 920
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 3235
PsuI RGATCY 5 cut(s) 508, 1221, 1279, 1852, 3363
PvuII CAGCTG 1 cut(s) 1544
RsaI GTAC 5 cut(s) 837, 2152, 2338, 2527, 3205
RsaNI GTAC 5 cut(s) 836, 2151, 2337, 2526, 3204
RseI CAYNNNNRTG 2 cut(s) 1236, 1487
SatI GCNGC 8 cut(s) 504, 1542, 2195, 2608, 3713, 3921, 3924, 4125
Sau96I GGNCC 7 cut(s) 318, 754, 2379, 2380, 3564, 3744, 4040
SchI GAGTC 6 cut(s) 560, 866, 1250, 2059, 2714, 3952
ScrFI CCNGG 9 cut(s) 164, 521, 892, 950, 1924, 2807, 2850, 3079, 3888
SduI GDGCHC 6 cut(s) 549, 609, 846, 1405, 1555, 2383
SfaNI GCATC 4 cut(s) 1201, 2451, 2487, 3941
SfcI CTRYAG 3 cut(s) 504, 2439, 2760
SfoI GGCGCC 1 cut(s) 3397
Sfr274I CTCGAG 2 cut(s) 179, 784
SfuI TTCGAA 3 cut(s) 929, 1591, 3144
SinI GGWCC 2 cut(s) 318, 754
SlaI CTCGAG 2 cut(s) 179, 784
SmiMI CAYNNNNRTG 2 cut(s) 1236, 1487
SseBI AGGCCT 3 cut(s) 26, 519, 2621
SsiI CCGC 8 cut(s) 966, 2529, 2610, 3024, 3317, 3460, 3924, 4124
SspDI GGCGCC 1 cut(s) 3395
SspI AATATT 2 cut(s) 2144, 2864
SspMI CTAG 7 cut(s) 512, 596, 917, 1277, 2516, 3588, 3816
StuI AGGCCT 3 cut(s) 26, 519, 2621
StyD4I CCNGG 9 cut(s) 162, 519, 890, 948, 1922, 2805, 2848, 3077, 3886
StyI CCWWGG 2 cut(s) 713, 1627
TaiI ACGT 6 cut(s) 75, 604, 830, 1387, 1453, 2169
TaqI TCGA 9 cut(s) 180, 785, 929, 1591, 1790, 3144, 3390, 3427, 3612
TatI WGTACW 2 cut(s) 2336, 3203
TauI GCSGC 2 cut(s) 3926, 4127
TscAI CASTG 9 cut(s) 121, 412, 1481, 1690, 2216, 3876, 3922, 4021, 4107
TseFI GTSAC 5 cut(s) 228, 1685, 1715, 3276, 3978
TseI GCWGC 6 cut(s) 503, 1541, 2194, 2607, 3712, 3920
Tsp45I GTSAC 5 cut(s) 228, 1685, 1715, 3276, 3978
TspGWI ACGGA 2 cut(s) 500, 1422
TspRI CASTG 9 cut(s) 121, 412, 1481, 1690, 2216, 3876, 3922, 4021, 4107
Van91I CCANNNNNTGG 1 cut(s) 3476
Vha464I CTTAAG 2 cut(s) 1378, 2648
VneI GTGCAC 1 cut(s) 1551
VpaK11BI GGWCC 2 cut(s) 318, 754
XagI CCTNNNNNAGG 1 cut(s) 761
XapI RAATTY 9 cut(s) 692, 924, 1205, 1373, 2015, 2566, 3140, 3967, 3991
XbaI TCTAGA 2 cut(s) 2515, 3815
XceI RCATGY 3 cut(s) 1693, 3634, 3979
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XhoI CTCGAG 2 cut(s) 179, 784
XmiI GTMKAC 2 cut(s) 1143, 1579
XmnI GAANNNNTTC 3 cut(s) 1322, 2041, 3150
XspI CTAG 7 cut(s) 512, 596, 917, 1277, 2516, 3588, 3816
ZraI GACGTC 1 cut(s) 1385
Zsp2I ATGCAT 1 cut(s) 1977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.