Rorug01G0216900

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008085
Physical Location & Seq
Forward (+)
31027130 .. 31030592
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216900.1

Sequence Viewer

Length: 972 bp
ATGGCTCTGTTCCCAGTTCACAAGGCCTCCCTTTCTAAATATACAACCTCTCCTTATCCCTTTAACTATCACGTGTTCTTGAGCTTCAGAGGTGAAGACACCCGAAAGAACTTCACTGATCACCTCCACGCGTCCCTTGTCAACGCCGGATTTCGAACTTTCCGGGATGGCGGACTCGAGAAAGGGAAAAATATCAAGGAAGAGCCTGAGAATGCCATTCGACAGTCACAAAGTTCTGTGATTGTGTTTTCGAAAGACTACACCTCTTCCAAATGGTGCCTCGACGAGCTTGACATGATCCTTGAACGCAAGAGGACCTCCAATCATTTCGTTTTACCAGTCTTCTACGACGTTGATCCATCCCATCTGAGGAAGCAGACTGGAAGTGTTGCAAAAGCATTTACTGAACACCAGAAAACTCAATCGTTTAGTAAAGTGAGAAGATGGAGGACAGCACTTAGAGAAGTTGCAGATCTAGCAGGAATGAATTTACAAAATGAAGCTGACGGGCACGAGTCAAAGTTTATCCAAAATATTGTTAGAGTGATTCAAGACAAACTAGGTCGTGTGCCCCTAAGCGATGTCCAGAAGGAATTAGAGGATAAGTTGTTATCTGTTAACCCTGTTCTTGATGACGCCGAGGGGAAGCAACTGAAATTCCAAACGACTGTGAAGCCATGGCTCCATAAGCTTAAAGAGGCTGTCTATGAGGCTGAGGACCTGTTGCAGGAGATCAAAACAGAAGCGTTGAGGCAAAAGATAGAACACGAATATGGCAGTAGCACGAGAAAGGTACAAGAGCTCATCTCTACTCCATCTCATGCTTTTGACTCAACTTTAATATACTCCAGGGTAGAGGAAGTTCTTGAAAGACTAGAAAACATTTCGAAGCAGACAAAAGATGTCCTGGATTCGGAAGTAACCGCCATGGACACAGATTATCACAAACACTACCGTCAACTTCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005911 GO:0009506 GO:0012505 GO:0030054 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 PH_BEACH WD40

Protein Analysis

323

Amino Acids

37.43

Weight (kDa)

6.91

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 22 - 196 1.8e-46 TIR domain
TIR_2 PF13676 25 - 123 6.8e-17 TIR domain
Rx_N PF18052 195 - 260 1.4e-13 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 171, 924
AclWI GGATC 2 cut(s) 292, 350
AcsI RAATTY 2 cut(s) 487, 656
AcuI CTGAAG 1 cut(s) 70
AcvI CACGTG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 1 cut(s) 795
AfiI CCNNNNNNNGG 3 cut(s) 369, 727, 913
AflIII ACRYGT 2 cut(s) 72, 129
AgsI TTSAA 3 cut(s) 305, 551, 869
AjnI CCWGG 2 cut(s) 848, 906
AluBI AGCT 5 cut(s) 84, 289, 503, 691, 802
AluI AGCT 5 cut(s) 84, 289, 503, 691, 802
Alw21I GWGCWC 1 cut(s) 804
AlwI GGATC 2 cut(s) 292, 350
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 2 cut(s) 487, 656
AspS9I GGNCC 2 cut(s) 315, 718
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 104, 113
AsuII TTCGAA 3 cut(s) 154, 251, 887
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 315, 718
BaeGI GKGCMC 2 cut(s) 513, 573
BanI GGYRCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 804
BauI CACGAG 2 cut(s) 512, 784
BbrPI CACGTG 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 102, 334
Bbv12I GWGCWC 1 cut(s) 804
BbvCI CCTCAGC 1 cut(s) 714
BccI CCATC 5 cut(s) 161, 367, 372, 438, 823
BciT130I CCWGG 2 cut(s) 850, 908
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 164
BfaI CTAG 3 cut(s) 476, 560, 875
BglII AGATCT 1 cut(s) 472
Bme1390I CCNGG 3 cut(s) 164, 850, 908
Bme18I GGWCC 2 cut(s) 315, 718
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 315, 718
BmiI GGNNCC 2 cut(s) 278, 683
BmrFI CCNGG 3 cut(s) 164, 850, 908
BmrI ACTGGG 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 102, 334
BplI GAGNNNNNCTC 2 cut(s) 791, 823
BpmI CTGGAG 1 cut(s) 832
Bpu10I CCTNAGC 2 cut(s) 575, 714
Bpu14I TTCGAA 3 cut(s) 154, 251, 887
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 636
BsaJI CCNNGG 4 cut(s) 639, 677, 849, 927
BsaXI ACNNNNNCTCC 4 cut(s) 11, 34, 41, 64
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 727, 913
Bse1I ACTGG 3 cut(s) 14, 338, 385
BseBI CCWGG 2 cut(s) 850, 908
BseDI CCNNGG 4 cut(s) 639, 677, 849, 927
BseGI GGATG 2 cut(s) 172, 359
BseLI CCNNNNNNNGG 3 cut(s) 369, 727, 913
BseMII CTCAG 3 cut(s) 198, 359, 705
BseNI ACTGG 3 cut(s) 14, 338, 385
BseSI GKGCMC 2 cut(s) 513, 573
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 804
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 147, 163
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 369, 727, 913
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 3 cut(s) 154, 251, 887
Bsp1286I GDGCHC 3 cut(s) 513, 573, 804
Bsp143I GATC 5 cut(s) 118, 297, 355, 472, 732
Bsp19I CCATGG 2 cut(s) 677, 927
BspACI CCGC 2 cut(s) 171, 924
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 199, 360, 706
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 278, 683
BspPI GGATC 2 cut(s) 292, 350
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 3 cut(s) 154, 251, 887
BspT107I GGYRCC 1 cut(s) 276
BsrI ACTGG 3 cut(s) 14, 338, 385
BssECI CCNNGG 4 cut(s) 639, 677, 849, 927
BssMI GATC 5 cut(s) 118, 297, 355, 472, 732
BssNI GRCGYC 1 cut(s) 636
BssSI CACGAG 2 cut(s) 512, 784
BssT1I CCWWGG 2 cut(s) 677, 927
Bst2BI CACGAG 2 cut(s) 512, 784
Bst2UI CCWGG 2 cut(s) 850, 908
Bst4CI ACNGT 3 cut(s) 225, 670, 956
Bst6I CTCTTC 2 cut(s) 195, 271
BstACI GRCGYC 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 73
BstBI TTCGAA 3 cut(s) 154, 251, 887
BstDEI CTNAG 5 cut(s) 207, 368, 458, 575, 714
BstDSI CCRYGG 2 cut(s) 677, 927
BstENI CCTNNNNNAGG 1 cut(s) 725
BstF5I GGATG 2 cut(s) 172, 359
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 5 cut(s) 121, 300, 358, 475, 735
BstMBI GATC 5 cut(s) 118, 297, 355, 472, 732
BstMWI GCNNNNNNNGC 2 cut(s) 476, 688
BstNI CCWGG 2 cut(s) 850, 908
BstSCI CCNGG 3 cut(s) 162, 848, 906
BstSLI GKGCMC 2 cut(s) 513, 573
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 2 cut(s) 102, 334
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 677, 927
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 2 cut(s) 172, 359
BtsIMutI CAGTG 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 315, 718
CseI GACGC 2 cut(s) 120, 644
Csp6I GTAC 1 cut(s) 794
CviAII CATG 4 cut(s) 295, 678, 821, 928
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 5 cut(s) 207, 368, 458, 575, 714
DpnI GATC 5 cut(s) 120, 299, 357, 474, 734
DpnII GATC 5 cut(s) 118, 297, 355, 472, 732
Eam1104I CTCTTC 2 cut(s) 195, 271
EarI CTCTTC 2 cut(s) 195, 271
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 802
Eco130I CCWWGG 2 cut(s) 677, 927
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 2 cut(s) 315, 718
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 70
Eco72I CACGTG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 725
EcoO109I RGGNCCY 2 cut(s) 315, 718
EcoRII CCWGG 2 cut(s) 848, 906
EcoT14I CCWWGG 2 cut(s) 677, 927
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 2 cut(s) 677, 927
FaeI CATG 4 cut(s) 298, 681, 824, 931
FaiI YATR 9 cut(s) 42, 296, 679, 687, 708, 774, 822, 844, 929
FaqI GGGAC 1 cut(s) 118
FatI CATG 4 cut(s) 294, 677, 820, 927
FbaI TGATCA 1 cut(s) 118
FokI GGATG 2 cut(s) 179, 346
FriOI GRGCYC 1 cut(s) 804
FspBI CTAG 3 cut(s) 476, 560, 875
GsuI CTGGAG 1 cut(s) 832
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 147, 163
HgaI GACGC 2 cut(s) 120, 644
Hin1I GRCGYC 1 cut(s) 636
Hin1II CATG 4 cut(s) 298, 681, 824, 931
HincII GTYRAC 3 cut(s) 142, 619, 959
HindII GTYRAC 3 cut(s) 142, 619, 959
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 5 cut(s) 174, 515, 547, 830, 911
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 2 cut(s) 147, 163
HphI GGTGA 2 cut(s) 104, 113
Hpy166II GTNNAC 4 cut(s) 19, 142, 619, 959
Hpy188I TCNGA 3 cut(s) 89, 369, 916
Hpy188III TCNNGA 6 cut(s) 79, 178, 551, 586, 629, 866
Hpy8I GTNNAC 4 cut(s) 19, 142, 619, 959
Hpy99I CGWCG 2 cut(s) 287, 353
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 3 cut(s) 225, 670, 956
HpyCH4IV ACGT 2 cut(s) 72, 351
HpyCH4V TGCA 3 cut(s) 392, 470, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 688
HpyF3I CTNAG 5 cut(s) 207, 368, 458, 575, 714
HpySE526I ACGT 2 cut(s) 72, 351
Hsp92I GRCGYC 1 cut(s) 636
Hsp92II CATG 4 cut(s) 298, 681, 824, 931
Ksp22I TGATCA 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 5 cut(s) 118, 297, 355, 472, 732
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 687
MaeI CTAG 3 cut(s) 476, 560, 875
MaeII ACGT 2 cut(s) 72, 351
MaeIII GTNAC 2 cut(s) 225, 919
MalI GATC 5 cut(s) 120, 299, 357, 474, 734
MboI GATC 5 cut(s) 118, 297, 355, 472, 732
MboII GAAGA 5 cut(s) 107, 212, 258, 334, 453
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 513, 573, 804
MluCI AATT 3 cut(s) 487, 593, 656
MluI ACGCGT 1 cut(s) 129
MlyI GAGTC 3 cut(s) 168, 524, 824
MseI TTAA 4 cut(s) 63, 618, 693, 839
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 2 cut(s) 147, 163
MspR9I CCNGG 3 cut(s) 164, 850, 908
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 850, 908
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 476, 688
NciI CCSGG 1 cut(s) 164
NcoI CCATGG 2 cut(s) 677, 927
NdeII GATC 5 cut(s) 118, 297, 355, 472, 732
NlaIII CATG 4 cut(s) 298, 681, 824, 931
NlaIV GGNNCC 2 cut(s) 278, 683
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 225
NspV TTCGAA 3 cut(s) 154, 251, 887
PaeR7I CTCGAG 1 cut(s) 176
PceI AGGCCT 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 195
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 547, 911
PfoI TCCNGGA 2 cut(s) 162, 906
PleI GAGTC 3 cut(s) 168, 523, 824
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
PpsI GAGTC 3 cut(s) 168, 523, 824
Ppu21I YACGTR 1 cut(s) 73
PpuMI RGGWCCY 2 cut(s) 315, 718
Psp124BI GAGCTC 1 cut(s) 804
Psp5II RGGWCCY 2 cut(s) 315, 718
Psp6I CCWGG 2 cut(s) 848, 906
PspCI CACGTG 1 cut(s) 73
PspGI CCWGG 2 cut(s) 848, 906
PspN4I GGNNCC 2 cut(s) 278, 683
PspPI GGNCC 2 cut(s) 315, 718
PspPPI RGGWCCY 2 cut(s) 315, 718
PsrI GAACNNNNNNTAC 2 cut(s) 846, 878
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 4 cut(s) 63, 618, 693, 839
Sau3AI GATC 5 cut(s) 118, 297, 355, 472, 732
Sau96I GGNCC 2 cut(s) 315, 718
SchI GAGTC 3 cut(s) 168, 524, 824
ScrFI CCNGG 3 cut(s) 164, 850, 908
SduI GDGCHC 3 cut(s) 513, 573, 804
Sfr274I CTCGAG 1 cut(s) 176
SfuI TTCGAA 3 cut(s) 154, 251, 887
SinI GGWCC 2 cut(s) 315, 718
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 79, 176
SmoI CTYRAG 2 cut(s) 79, 176
Sse9I AATT 3 cut(s) 487, 593, 656
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 2 cut(s) 171, 924
SspI AATATT 1 cut(s) 535
SspMI CTAG 3 cut(s) 476, 560, 875
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 162, 848, 906
StyI CCWWGG 2 cut(s) 677, 927
TaaI ACNGT 3 cut(s) 225, 670, 956
TaiI ACGT 2 cut(s) 75, 354
TaqI TCGA 6 cut(s) 154, 177, 220, 251, 282, 887
TasI AATT 3 cut(s) 487, 593, 656
TfiI GAWTC 2 cut(s) 547, 911
Tru1I TTAA 4 cut(s) 63, 618, 693, 839
Tru9I TTAA 4 cut(s) 63, 618, 693, 839
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 500, 513
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 315, 718
XagI CCTNNNNNAGG 1 cut(s) 725
XapI RAATTY 2 cut(s) 487, 656
XhoI CTCGAG 1 cut(s) 176
XspI CTAG 3 cut(s) 476, 560, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.