AT2G46100

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016117
Physical Location & Seq
Forward (+)
18953275 .. 18954619
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46100.1

Sequence Viewer

Length: 723 bp
ATGGTAGCTTCTCTTTCCTTTCATTCCATCGCCACCGTTAATCCAATCTTCTCCGGCGATGGTGGTCGTTCAATCTTCCGGACTAATCGCCGATTCGAAGCAACTGGAGTGAGTTGCCGAGGACAGAATCCTACTGACGAGCCACAGACAAGTAAAGGACCCGAGCCGGATAATGTTCTACTCAAAATCGCTTGGTACGGATCTGAGCTACTCGGAATAGCTGCTTCTGTTTTCCGATCTCCGGAGACTTCTCCGATTGTGACAGGCTTTGAGGTTCCTGTTGATTGTTCTGGTCGAGCCGTTCGTGTAGCTGTCGTGGACTCGATTAAACAAGACTTTAAACGATCCTACTTCGTCACAGGTAATTTGACGCCGGAGGTTTATGAGGAGAAGTGTGAATTCGCTGATCCGGCTGGATCCTTCAAGGGTCTTGCTCGTTTCAAAAGGAATTGCACTAATTTCGGAAGCCTTATCGAGAAATCCAATATGAAGCTCATGAAATGGGAGAATTTTGAGGATAAAGGAATTGGACATTGGAAATTTAGCTGTGTCATGTCGTTTCCATGGAAACCCATTCTTTCAGCAACTGGTTACACGGAGTATTATTTCGACACAGAATCCGGGAAAATTTGCAGGCACGTGGAGCATTGGAATGTCCCTAAGATTGCTCTGTTCAAACAACTTCTGAGACCCAGCCGTGGTTTAGTGGGGACACAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

240

Amino Acids

26.84

Weight (kDa)

8.86

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 105 - 213 5.7e-13 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 78, 241
AclWI GGATC 5 cut(s) 208, 339, 401, 411, 424
AcsI RAATTY 4 cut(s) 398, 508, 539, 627
AcvI CACGTG 1 cut(s) 640
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 241, 698
AgsI TTSAA 4 cut(s) 72, 424, 442, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 6 cut(s) 8, 208, 221, 311, 493, 546
AluI AGCT 6 cut(s) 8, 208, 221, 311, 493, 546
Alw26I GTCTC 2 cut(s) 239, 682
AlwI GGATC 5 cut(s) 208, 339, 401, 411, 424
AlwNI CAGNNNCTG 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 161
Aor13HI TCCGGA 2 cut(s) 78, 241
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 4 cut(s) 398, 508, 539, 627
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 622
AsuII TTCGAA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 416
BbrPI CACGTG 1 cut(s) 640
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 35, 53
BceAI ACGGC 2 cut(s) 284, 681
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BcnI CCSGG 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 239, 682
BfaI CTAG 1 cut(s) 721
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 622
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 3 cut(s) 160, 276, 418
BmrFI CCNGG 1 cut(s) 622
BpmI CTGGAG 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 3 cut(s) 118, 563, 697
BsaWI WCCGGW 2 cut(s) 78, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 698
Bse1I ACTGG 2 cut(s) 109, 592
BseAI TCCGGA 2 cut(s) 78, 241
BseDI CCNNGG 3 cut(s) 118, 563, 697
BseLI CCNNNNNNNGG 2 cut(s) 241, 698
BseMII CTCAG 2 cut(s) 195, 677
BseNI ACTGG 2 cut(s) 109, 592
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 692
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 7 cut(s) 54, 79, 167, 242, 374, 410, 621
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 241, 698
BsmAI GTCTC 2 cut(s) 239, 682
BsmFI GGGAC 1 cut(s) 641
Bso31I GGTCTC 1 cut(s) 682
BsoBI CYCGRG 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 96
Bsp13I TCCGGA 2 cut(s) 78, 241
Bsp143I GATC 5 cut(s) 200, 236, 344, 406, 416
Bsp19I CCATGG 1 cut(s) 563
BspCNI CTCAG 2 cut(s) 196, 678
BspEI TCCGGA 2 cut(s) 78, 241
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 160, 276, 418
BspPI GGATC 5 cut(s) 208, 339, 401, 411, 424
BspT104I TTCGAA 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 682
BsrI ACTGG 2 cut(s) 109, 592
BssECI CCNNGG 3 cut(s) 118, 563, 697
BssMI GATC 5 cut(s) 200, 236, 344, 406, 416
BssNI GRCGYC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 563
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 640
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 3 cut(s) 204, 660, 686
BstDSI CCRYGG 2 cut(s) 563, 697
BstKTI GATC 5 cut(s) 203, 239, 347, 409, 419
BstMAI GTCTC 2 cut(s) 239, 682
BstMBI GATC 5 cut(s) 200, 236, 344, 406, 416
BstMWI GCNNNNNNNGC 2 cut(s) 410, 643
BstSCI CCNGG 1 cut(s) 620
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 2 cut(s) 200, 416
BstYI RGATCY 2 cut(s) 200, 416
BtgI CCRYGG 2 cut(s) 563, 697
BtgZI GCGATG 2 cut(s) 13, 72
Cac8I GCNNGC 1 cut(s) 635
CaiI CAGNNNCTG 1 cut(s) 587
CciI TCATGA 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 496, 553, 564
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 3 cut(s) 204, 660, 686
DpnI GATC 5 cut(s) 202, 238, 346, 408, 418
DpnII GATC 5 cut(s) 200, 236, 344, 406, 416
DraI TTTAAA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 3 cut(s) 499, 556, 567
FaiI YATR 5 cut(s) 384, 488, 497, 554, 565
FaqI GGGAC 1 cut(s) 641
FatI CATG 3 cut(s) 495, 552, 563
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 721
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 126
HapII CCGG 7 cut(s) 54, 79, 167, 242, 374, 410, 621
HgaI GACGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 3 cut(s) 499, 556, 567
HinfI GANTC 4 cut(s) 93, 127, 320, 617
HpaII CCGG 7 cut(s) 54, 79, 167, 242, 374, 410, 621
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 6 cut(s) 205, 215, 236, 255, 464, 687
Hpy188III TCNNGA 4 cut(s) 79, 242, 475, 496
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 2 cut(s) 453, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 643
HpyF3I CTNAG 3 cut(s) 204, 660, 686
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 3 cut(s) 499, 556, 567
Kpn2I TCCGGA 2 cut(s) 78, 241
Kzo9I GATC 5 cut(s) 200, 236, 344, 406, 416
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 721
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 3 cut(s) 259, 355, 590
MalI GATC 5 cut(s) 202, 238, 346, 408, 418
MboI GATC 5 cut(s) 200, 236, 344, 406, 416
MboII GAAGA 2 cut(s) 40, 67
MflI RGATCY 2 cut(s) 200, 416
MluCI AATT 8 cut(s) 364, 398, 448, 457, 508, 525, 539, 627
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 5 cut(s) 113, 265, 370, 379, 508
MroI TCCGGA 2 cut(s) 78, 241
MseI TTAA 3 cut(s) 39, 327, 339
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 7 cut(s) 54, 79, 167, 242, 374, 410, 621
MspR9I CCNGG 1 cut(s) 622
MwoI GCNNNNNNNGC 2 cut(s) 410, 643
NciI CCSGG 1 cut(s) 622
NcoI CCATGG 1 cut(s) 563
NdeII GATC 5 cut(s) 200, 236, 344, 406, 416
NlaIII CATG 3 cut(s) 499, 556, 567
NlaIV GGNNCC 3 cut(s) 160, 276, 418
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 259, 355
NspV TTCGAA 1 cut(s) 96
PagI TCATGA 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 3 cut(s) 93, 127, 617
PfoI TCCNGGA 1 cut(s) 620
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 314
PmaCI CACGTG 1 cut(s) 640
PmlI CACGTG 1 cut(s) 640
PpsI GAGTC 1 cut(s) 314
Ppu21I YACGTR 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 158
PspCI CACGTG 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 692
PspN4I GGNNCC 3 cut(s) 160, 276, 418
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 200, 416
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 39, 327, 339
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 5 cut(s) 200, 236, 344, 406, 416
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 651
Sse9I AATT 8 cut(s) 364, 398, 448, 457, 508, 525, 539, 627
SspMI CTAG 1 cut(s) 721
StyD4I CCNGG 1 cut(s) 620
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 642
TaqI TCGA 5 cut(s) 96, 295, 323, 474, 609
TasI AATT 8 cut(s) 364, 398, 448, 457, 508, 525, 539, 627
TfiI GAWTC 3 cut(s) 93, 127, 617
Tru1I TTAA 3 cut(s) 39, 327, 339
Tru9I TTAA 3 cut(s) 39, 327, 339
TseFI GTSAC 2 cut(s) 259, 355
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 2 cut(s) 259, 355
TspDTI ATGAA 3 cut(s) 11, 503, 512
TspGWI ACGGA 2 cut(s) 213, 611
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 4 cut(s) 398, 508, 539, 627
XspI CTAG 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.