Rh1DG265100

Uncharacterized conserved protein (DUF2358)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
48222611 .. 48223416
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG265100.1

Sequence Viewer

Length: 612 bp
ATGGCAAACATTTTCTCCAATGCTTCCATTACATCACGTCTCACTGCTCAGCACCACCACCTCAGTTTCCAGCCAAATCATCTCAGTTTACAGCCAAATCAGCGTTACAGTGTGTGCAGAATTCGTTGCAGTGGTGAAAACGCAACAAGCAAATCAACATCCAATACAGAATCCCAACCAGAAAATGCAAATGTAGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCGTTTTTCAACCCACCATCCAAAGTTGAAGCTCCTGAAACTGCTCTTGAGCTTGCAAGAGATGGGTCTGGAGCCGTTGATCGTGCCGGAGTAGTAAAATCAATCAAAGATGACTTTGAAAGATCATACTTTGTCACAGGGAACCTTACGCTTGATGCTTATGAAGAGGATTGTGAATTTGCTGATCCTGCAAGCTCATTCAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGATCCCTTTTAAAGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGTAATATCAAATTCCACATTTTCTTCCATGAGTTCTCTCATTAGCCAGCTTATGAATCTTTTGCTGCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

22.55

Weight (kDa)

6.43

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 457
AclWI GGATC 3 cut(s) 422, 480, 493
AcsI RAATTY 3 cut(s) 120, 419, 547
AfaI GTAC 1 cut(s) 475
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 6 cut(s) 253, 272, 362, 445, 455, 463
AjiI CACGTC 1 cut(s) 38
AluBI AGCT 5 cut(s) 275, 295, 438, 514, 586
AluI AGCT 5 cut(s) 275, 295, 438, 514, 586
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 3 cut(s) 422, 480, 493
ApeKI GCWGC 1 cut(s) 601
ApoI RAATTY 3 cut(s) 120, 419, 547
AsuHPI GGTGA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 485
BbvI GCAGC 1 cut(s) 588
BccI CCATC 2 cut(s) 268, 299
BceAI ACGGC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 603
BmgBI CACGTC 1 cut(s) 38
BmiI GGNNCC 3 cut(s) 316, 386, 487
BmsI GCATC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 311
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 234
BseGI GGATG 2 cut(s) 158, 260
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 4 cut(s) 62, 76, 97, 213
BseXI GCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 136
BsiSI CCGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
Bsp143I GATC 4 cut(s) 322, 365, 427, 485
Bsp1720I GCTNAGC 1 cut(s) 48
BspCNI CTCAG 4 cut(s) 61, 75, 96, 214
BspLI GGNNCC 3 cut(s) 316, 386, 487
BspPI GGATC 3 cut(s) 422, 480, 493
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 234
BssMI GATC 4 cut(s) 322, 365, 427, 485
Bst4CI ACNGT 2 cut(s) 110, 473
Bst6I CTCTTC 1 cut(s) 402
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 297, 436, 584
BstDEI CTNAG 4 cut(s) 48, 62, 83, 222
BstF5I GGATG 2 cut(s) 158, 260
BstKTI GATC 4 cut(s) 325, 368, 430, 488
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 322, 365, 427, 485
BstMWI GCNNNNNNNGC 3 cut(s) 100, 215, 431
BstV1I GCAGC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 158, 260
BtsI GCAGTG 2 cut(s) 42, 136
BtsIMutI CAGTG 3 cut(s) 42, 115, 136
Cac8I GCNNGC 3 cut(s) 297, 436, 584
Csp6I GTAC 1 cut(s) 474
CviAII CATG 1 cut(s) 565
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 4 cut(s) 48, 62, 83, 222
DpnI GATC 4 cut(s) 324, 367, 429, 487
DpnII GATC 4 cut(s) 322, 365, 427, 485
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 568
FaiI YATR 7 cut(s) 216, 370, 405, 509, 518, 566, 590
FatI CATG 1 cut(s) 564
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 2 cut(s) 145, 247
Fsp4HI GCNGC 1 cut(s) 602
GluI GCNGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 333
HapII CCGG 1 cut(s) 330
Hin1II CATG 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 2 cut(s) 170, 592
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 3 cut(s) 278, 290, 312
Hpy8I GTNNAC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 110, 473
HpyCH4IV ACGT 2 cut(s) 37, 457
HpyCH4V TGCA 5 cut(s) 117, 129, 188, 299, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 215, 431
HpyF3I CTNAG 4 cut(s) 48, 62, 83, 222
HpySE526I ACGT 2 cut(s) 37, 457
Hsp92II CATG 1 cut(s) 568
Kzo9I GATC 4 cut(s) 322, 365, 427, 485
LmnI GCTCC 2 cut(s) 280, 314
LpnPI CCDG 8 cut(s) 83, 192, 291, 297, 343, 366, 444, 596
Lsp1109I GCAGC 1 cut(s) 588
LweI GCATC 1 cut(s) 388
MaeII ACGT 2 cut(s) 37, 457
MaeIII GTNAC 2 cut(s) 104, 376
MalI GATC 4 cut(s) 324, 367, 429, 487
MboI GATC 4 cut(s) 322, 365, 427, 485
MboII GAAGA 3 cut(s) 419, 539, 552
MflI RGATCY 1 cut(s) 485
MluCI AATT 4 cut(s) 120, 419, 478, 547
MnlI CCTC 4 cut(s) 71, 229, 403, 529
MseI TTAA 2 cut(s) 201, 494
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 100, 215, 431
NdeII GATC 4 cut(s) 322, 365, 427, 485
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 3 cut(s) 316, 386, 487
NmuCI GTSAC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 170, 592
PkrI GCNGC 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 457
PspN4I GGNNCC 3 cut(s) 316, 386, 487
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 201, 494
SatI GCNGC 1 cut(s) 602
Sau3AI GATC 4 cut(s) 322, 365, 427, 485
SfaNI GCATC 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 200, 290
SmoI CTYRAG 2 cut(s) 200, 290
Sse9I AATT 4 cut(s) 120, 419, 478, 547
TaaI ACNGT 2 cut(s) 110, 473
TaiI ACGT 2 cut(s) 40, 460
TasI AATT 4 cut(s) 120, 419, 478, 547
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 2 cut(s) 170, 592
Tru1I TTAA 2 cut(s) 201, 494
Tru9I TTAA 2 cut(s) 201, 494
TscAI CASTG 3 cut(s) 49, 115, 136
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 420, 524, 533, 605
TspRI CASTG 3 cut(s) 49, 115, 136
Vha464I CTTAAG 1 cut(s) 200
XapI RAATTY 3 cut(s) 120, 419, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.