Rw1G023850

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016117
Physical Location & Seq
Reverse (-)
49881353 .. 49883412
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023850.1

Sequence Viewer

Length: 717 bp
ATGGCTAATATTCATTGTGGTCTTGGATATTTAACTCCAACCATAGGTTGTGTTTCTCTCTCTTTTCAAATGGCAAACATTTTCTCCTATGCTTCCATTACACCACGCCTCACTGCTCAGCACCACTACCTCAGTTTCCAGCCAAATCATTTCAGTTTGCAGCCAAGTCAGCGTTACAGTGTGTGCAGAATTCGTTGCAGTGGTGAAAACCCAACAAGAAAATCAACATCCAATACAGAATCCCAACCAGAAAATGCAAATGTAGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCGTTTTTCAACCCACCATCCAAAGTTGAAGCTCCTGAAACTGCTCTTGAGCTTGCAAGAGATTGGTCTGGAGCCGTTGATCGTGCCGGAGTAGTAAAATCAATCAAAGATGACTTTGAAAGATCATACTTTGTCACAGGGAACCTCACGCTTGATGCATATGAAGAGGATTGTGAATTTGCTGATCCTGCAAGCTCATTCAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGGTCCCTTTTAAAGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGAGATTCAGTTGTATCTTGTCATTCCCTTGGAGGCCAATTCTGTCTGGTATGCTTTTGTGCAATCACTCGTTAACTACATGTATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

238

Amino Acids

26.82

Weight (kDa)

8.35

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 135 - 222 4e-08 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 526
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 2 cut(s) 189, 488
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 1 cut(s) 44
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 704
AgsI TTSAA 7 cut(s) 68, 322, 341, 431, 514, 524, 532
AluBI AGCT 4 cut(s) 344, 364, 507, 583
AluI AGCT 4 cut(s) 344, 364, 507, 583
AlwI GGATC 1 cut(s) 491
AoxI GGCC 1 cut(s) 659
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 189, 488
AspS9I GGNCC 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 371
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 161
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 555
BmiI GGNNCC 4 cut(s) 385, 455, 556, 557
BmsI GCATC 1 cut(s) 457
BpmI CTGGAG 2 cut(s) 402, 646
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 653
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 619, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 227, 329
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 3 cut(s) 131, 145, 282
BseNI ACTGG 1 cut(s) 629
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 205
BshFI GGCC 1 cut(s) 661
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 1 cut(s) 661
Bsp143I GATC 3 cut(s) 391, 434, 496
Bsp1720I GCTNAGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 3 cut(s) 130, 144, 283
BspLI GGNNCC 4 cut(s) 385, 455, 556, 557
BspPI GGATC 1 cut(s) 491
BspTI CTTAAG 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 3 cut(s) 391, 434, 496
BssT1I CCWWGG 1 cut(s) 653
Bst4CI ACNGT 2 cut(s) 179, 542
Bst6I CTCTTC 1 cut(s) 471
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 366, 505
BstDEI CTNAG 3 cut(s) 117, 131, 291
BstF5I GGATG 2 cut(s) 227, 329
BstKTI GATC 3 cut(s) 394, 437, 499
BstMBI GATC 3 cut(s) 391, 434, 496
BstMWI GCNNNNNNNGC 3 cut(s) 169, 284, 500
BstNSI RCATGY 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 2 cut(s) 227, 329
BtsI GCAGTG 2 cut(s) 111, 205
BtsIMutI CAGTG 4 cut(s) 111, 184, 205, 622
Cac8I GCNNGC 2 cut(s) 366, 505
Cfr13I GGNCC 1 cut(s) 555
Csp6I GTAC 1 cut(s) 543
CviAII CATG 1 cut(s) 705
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 3 cut(s) 117, 131, 291
DpnI GATC 3 cut(s) 393, 436, 498
DpnII GATC 3 cut(s) 391, 434, 496
DraI TTTAAA 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 653
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 1 cut(s) 708
FaqI GGGAC 1 cut(s) 541
FatI CATG 1 cut(s) 704
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 214, 316
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 2 cut(s) 402, 646
HaeIII GGCC 1 cut(s) 661
HapII CCGG 1 cut(s) 399
Hin1II CATG 1 cut(s) 708
HincII GTYRAC 1 cut(s) 699
HindII GTYRAC 1 cut(s) 699
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 2 cut(s) 239, 630
HpaI GTTAAC 1 cut(s) 699
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 699
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 347, 359, 381
Hpy8I GTNNAC 1 cut(s) 699
HpyCH4III ACNGT 2 cut(s) 179, 542
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 8 cut(s) 160, 186, 198, 257, 368, 470, 503, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 284, 500
HpyF3I CTNAG 3 cut(s) 117, 131, 291
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 708
KflI GGGWCCC 1 cut(s) 555
KspAI GTTAAC 1 cut(s) 699
Kzo9I GATC 3 cut(s) 391, 434, 496
LmnI GCTCC 2 cut(s) 349, 383
LpnPI CCDG 9 cut(s) 152, 261, 360, 366, 412, 435, 513, 610, 657
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 457
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 3 cut(s) 173, 445, 620
MalI GATC 3 cut(s) 393, 436, 498
MboI GATC 3 cut(s) 391, 434, 496
MboII GAAGA 2 cut(s) 488, 608
MluCI AATT 5 cut(s) 189, 488, 547, 615, 663
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 7 cut(s) 119, 140, 298, 467, 472, 598, 651
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 32, 270, 563, 698
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 169, 284, 500
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 391, 434, 496
NlaIII CATG 1 cut(s) 708
NlaIV GGNNCC 4 cut(s) 385, 455, 556, 557
NmuCI GTSAC 2 cut(s) 445, 620
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 708
PciI ACATGT 1 cut(s) 704
PfeI GAWTC 2 cut(s) 239, 630
PkrI GCNGC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 555
PscI ACATGT 1 cut(s) 704
Psp1406I AACGTT 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 555
PspN4I GGNNCC 4 cut(s) 385, 455, 556, 557
PspPI GGNCC 1 cut(s) 555
PspPPI RGGWCCY 1 cut(s) 555
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 32, 270, 563, 698
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 391, 434, 496
Sau96I GGNCC 1 cut(s) 555
SetI ASST 9 cut(s) 49, 132, 276, 346, 366, 459, 509, 529, 585
SfaNI GCATC 1 cut(s) 457
SinI GGWCC 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 269, 359
SmoI CTYRAG 2 cut(s) 269, 359
Sse9I AATT 5 cut(s) 189, 488, 547, 615, 663
SspI AATATT 1 cut(s) 10
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 2 cut(s) 179, 542
TaiI ACGT 1 cut(s) 529
TasI AATT 5 cut(s) 189, 488, 547, 615, 663
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 2 cut(s) 239, 630
Tru1I TTAA 4 cut(s) 32, 270, 563, 698
Tru9I TTAA 4 cut(s) 32, 270, 563, 698
TscAI CASTG 4 cut(s) 118, 184, 205, 629
TseFI GTSAC 2 cut(s) 445, 620
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 2 cut(s) 445, 620
TspDTI ATGAA 3 cut(s) 489, 593, 602
TspRI CASTG 4 cut(s) 118, 184, 205, 629
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 555
XapI RAATTY 2 cut(s) 189, 488
XceI RCATGY 1 cut(s) 708
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.