Rh1CG253500

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016117
Physical Location & Seq
Reverse (-)
51759092 .. 51760500
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG253500.1

Sequence Viewer

Length: 753 bp
ATGGCAAACATTTTCTCCTATGCTTCCATTACACCACGCCTCACTCCTCAGCACCACCACTACCTCAGTTTCCAGCCAAATAATTTCAGTTTACAGCCAAGTCAGCGTTACAGTGTGTGCAGAATTCGTTGCAGTGGTGAAAACCCAACAAGAAAATCAACATCCAATACAGAATCCCAACCAGAAAATGCAAATGTAGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCGTTTTTCAACCCACCATCCAAAGTTGAAGCTCCTGAAACTGCTCTTGAGCTTGCAAGAGATGGGTCTGGAGCCGTTGATCGTGCCGGAGTAGTAAAATCAATCAAAGATGACTTTGAAAGATCATACTTTGTCACAGGGAACCTCACGCTTGATGCATATGAAGAGGATTGTGAATTTGCTGATCCTGCAAGCTCATTCAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGATCCCTTTTAAAGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGAGATTCAGTTGTATCTTGTCATTCCCTTGGAGGCCAATTCTGTCTGCAAGTGGATACACTGAGTACTACTTTGATGAAAAGTCAGGGAAAGTGTCCAGGCATGTAGAGCACTGGAATGTTCCCAAAATGGTTTTACTGAAGCAGATTCTAAAGCCAAGCAGGGGATTCTGGCTTAAGAAAACAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

250

Amino Acids

28.49

Weight (kDa)

9.11

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 113 - 221 8.4e-13 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 460
AclWI GGATC 3 cut(s) 425, 483, 496
AcsI RAATTY 2 cut(s) 123, 422
AcuI CTGAAG 1 cut(s) 719
AfaI GTAC 2 cut(s) 478, 626
AfiI CCNNNNNNNGG 1 cut(s) 722
AflII CTTAAG 2 cut(s) 203, 734
AgsI TTSAA 6 cut(s) 256, 275, 365, 448, 458, 466
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 4 cut(s) 278, 298, 441, 517
AluI AGCT 4 cut(s) 278, 298, 441, 517
Alw21I GWGCWC 1 cut(s) 672
AlwI GGATC 3 cut(s) 425, 483, 496
AoxI GGCC 1 cut(s) 593
ApoI RAATTY 2 cut(s) 123, 422
AsuHPI GGTGA 1 cut(s) 149
BamHI GGATCC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 271, 302
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 658
BciVI GTATCC 1 cut(s) 608
BfrI CTTAAG 2 cut(s) 203, 734
BfuI GTATCC 1 cut(s) 608
BmcAI AGTACT 1 cut(s) 626
Bme1390I CCNGG 1 cut(s) 658
BmiI GGNNCC 3 cut(s) 319, 389, 490
BmrFI CCNGG 1 cut(s) 658
BmsI GCATC 1 cut(s) 391
BpmI CTGGAG 2 cut(s) 336, 580
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 3 cut(s) 29, 553, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse1I ACTGG 2 cut(s) 563, 677
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 2 cut(s) 161, 263
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 4 cut(s) 62, 79, 216, 612
BseNI ACTGG 2 cut(s) 563, 677
BseRI GAGGAG 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 595
BsiHKAI GWGCWC 1 cut(s) 672
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 722
BsnI GGCC 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 4 cut(s) 325, 368, 430, 488
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 4 cut(s) 61, 78, 217, 613
BspLI GGNNCC 3 cut(s) 319, 389, 490
BspPI GGATC 3 cut(s) 425, 483, 496
BspTI CTTAAG 2 cut(s) 203, 734
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 2 cut(s) 563, 677
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 4 cut(s) 325, 368, 430, 488
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 2 cut(s) 113, 476
Bst6I CTCTTC 1 cut(s) 405
BstAFI CTTAAG 2 cut(s) 203, 734
BstC8I GCNNGC 2 cut(s) 300, 439
BstDEI CTNAG 4 cut(s) 48, 65, 225, 621
BstF5I GGATG 2 cut(s) 161, 263
BstKTI GATC 4 cut(s) 328, 371, 433, 491
BstMBI GATC 4 cut(s) 325, 368, 430, 488
BstMWI GCNNNNNNNGC 4 cut(s) 103, 218, 434, 667
BstNI CCWGG 1 cut(s) 658
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 1 cut(s) 595
BtsCI GGATG 2 cut(s) 161, 263
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 5 cut(s) 118, 139, 556, 618, 670
Cac8I GCNNGC 2 cut(s) 300, 439
Csp6I GTAC 2 cut(s) 477, 625
CviAII CATG 1 cut(s) 662
CviQI GTAC 2 cut(s) 477, 625
DdeI CTNAG 4 cut(s) 48, 65, 225, 621
DpnI GATC 4 cut(s) 327, 370, 432, 490
DpnII GATC 4 cut(s) 325, 368, 430, 488
DraI TTTAAA 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 1 cut(s) 665
FaiI YATR 8 cut(s) 21, 219, 373, 406, 408, 512, 521, 663
FatI CATG 1 cut(s) 661
FauNDI CATATG 1 cut(s) 406
FokI GGATG 2 cut(s) 148, 250
GsuI CTGGAG 2 cut(s) 336, 580
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 333
Hin1II CATG 1 cut(s) 665
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 4 cut(s) 173, 564, 706, 726
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 281, 293, 315
Hpy8I GTNNAC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 113, 476
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 7 cut(s) 120, 132, 191, 302, 404, 437, 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 218, 434, 667
HpyF3I CTNAG 4 cut(s) 48, 65, 225, 621
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 1 cut(s) 665
Kzo9I GATC 4 cut(s) 325, 368, 430, 488
LmnI GCTCC 2 cut(s) 283, 317
LweI GCATC 1 cut(s) 391
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 3 cut(s) 107, 379, 554
MalI GATC 4 cut(s) 327, 370, 432, 490
MboI GATC 4 cut(s) 325, 368, 430, 488
MboII GAAGA 2 cut(s) 422, 542
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 6 cut(s) 82, 123, 422, 481, 549, 597
MnlI CCTC 8 cut(s) 50, 57, 74, 232, 401, 406, 532, 585
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 3 cut(s) 204, 497, 735
MslI CAYNNNNRTG 1 cut(s) 675
MspCI CTTAAG 2 cut(s) 203, 734
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 658
MvaI CCWGG 1 cut(s) 658
MwoI GCNNNNNNNGC 4 cut(s) 103, 218, 434, 667
NdeI CATATG 1 cut(s) 406
NdeII GATC 4 cut(s) 325, 368, 430, 488
NlaIII CATG 1 cut(s) 665
NlaIV GGNNCC 3 cut(s) 319, 389, 490
NmuCI GTSAC 2 cut(s) 379, 554
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 665
PfeI GAWTC 4 cut(s) 173, 564, 706, 726
Psp1406I AACGTT 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 656
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 319, 389, 490
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 2 cut(s) 478, 626
RsaNI GTAC 2 cut(s) 477, 625
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 3 cut(s) 204, 497, 735
Sau3AI GATC 4 cut(s) 325, 368, 430, 488
ScaI AGTACT 1 cut(s) 626
ScrFI CCNGG 1 cut(s) 658
SduI GDGCHC 1 cut(s) 672
SetI ASST 9 cut(s) 66, 210, 280, 300, 393, 443, 463, 519, 748
SfaNI GCATC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 3 cut(s) 203, 293, 734
SmoI CTYRAG 3 cut(s) 203, 293, 734
Sse9I AATT 6 cut(s) 82, 123, 422, 481, 549, 597
StyD4I CCNGG 1 cut(s) 656
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 2 cut(s) 113, 476
TaiI ACGT 1 cut(s) 463
TasI AATT 6 cut(s) 82, 123, 422, 481, 549, 597
TatI WGTACW 2 cut(s) 476, 624
TfiI GAWTC 4 cut(s) 173, 564, 706, 726
Tru1I TTAA 3 cut(s) 204, 497, 735
Tru9I TTAA 3 cut(s) 204, 497, 735
TscAI CASTG 5 cut(s) 118, 139, 563, 625, 677
TseFI GTSAC 2 cut(s) 379, 554
Tsp45I GTSAC 2 cut(s) 379, 554
TspDTI ATGAA 4 cut(s) 423, 527, 536, 651
TspRI CASTG 5 cut(s) 118, 139, 563, 625, 677
Vha464I CTTAAG 2 cut(s) 203, 734
XapI RAATTY 2 cut(s) 123, 422
XceI RCATGY 1 cut(s) 665
ZrmI AGTACT 1 cut(s) 626
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.