Rw1G024050

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016117
Physical Location & Seq
Forward (+)
50083877 .. 50092306
8430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024050.1

Sequence Viewer

Length: 834 bp
ATGGCTAATATTCATTCTGGTCTTAGATATTTAACTCCAACCATAGGTTGTGTTTCTCTCTCTTTTCAAATGGCAAACATTTTCTCCTATGCTTCCATTACACCACGCCTCACTGCTCAGCACCACTACCTCAGTTTCCAGCCAAATCATTTCAGTTTACAGCCAAGTCAGCGTTACAGTGTGTGCAGAATTCGTTGCAGTGGTGAAAACCCAACAAGCAAATCAACATCCAATACAGAATCCCAACCAGAAAATGCAAATGTAGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCGTTTTTCAACCCACCATCCAAAGTTGAAGCTCCTGAAACTGCTCTTGAGCTTGCAAGAGATGGGTCTGGAGCCGTTGATCTTGCCGGAGTAGTAAAATCAATCAAAGATGACTTTGAAAGATCATACTTTGTCACAGGGAACCTCACGCTTGATGCATATGAAGAGGATTGTGAATTTGCTGATCCTGCAAGCTCATTCAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGATCCCTTTTAAAGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGAGATTCAGTTGTATCTTGTCATTCCCTTGGAGGCCAATTCTGTCTGCAAGTGGATACACTGAGTACTACTTTGATGAAAACAGGGGCGGAACCAGGATTCTAGGATTGGGGGGGCATGTAGAGCACTGGAATGTTCCCAAAATGGTTTTACTGAAGCAGATTCTAAAGCCAAGCAGGGGATTCTGGCTTAAGAAAACAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

277

Amino Acids

31.14

Weight (kDa)

8.81

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 135 - 236 8.8e-12 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 714
AclI AACGTT 1 cut(s) 526
AclWI GGATC 3 cut(s) 491, 549, 562
AcsI RAATTY 2 cut(s) 189, 488
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 2 cut(s) 544, 692
AfiI CCNNNNNNNGG 2 cut(s) 44, 803
AflII CTTAAG 2 cut(s) 269, 815
AgsI TTSAA 7 cut(s) 68, 322, 341, 431, 514, 524, 532
AjnI CCWGG 1 cut(s) 719
AluBI AGCT 4 cut(s) 344, 364, 507, 583
AluI AGCT 4 cut(s) 344, 364, 507, 583
Alw21I GWGCWC 1 cut(s) 753
AlwI GGATC 3 cut(s) 491, 549, 562
AoxI GGCC 1 cut(s) 659
ApoI RAATTY 2 cut(s) 189, 488
AsuHPI GGTGA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 753
BccI CCATC 2 cut(s) 337, 368
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 721
BciVI GTATCC 1 cut(s) 674
BfaI CTAG 1 cut(s) 728
BfrI CTTAAG 2 cut(s) 269, 815
BfuI GTATCC 1 cut(s) 674
BlpI GCTNAGC 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 721
BmiI GGNNCC 4 cut(s) 385, 455, 556, 718
BmrFI CCNGG 1 cut(s) 721
BmsI GCATC 1 cut(s) 457
BpmI CTGGAG 2 cut(s) 402, 646
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 653
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 619, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 803
Bse1I ACTGG 2 cut(s) 629, 758
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 721
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 227, 329
BseLI CCNNNNNNNGG 2 cut(s) 44, 803
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 4 cut(s) 131, 145, 282, 678
BseNI ACTGG 2 cut(s) 629, 758
BsgI GTGCAG 1 cut(s) 205
BshFI GGCC 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 44, 803
BsnI GGCC 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 4 cut(s) 391, 434, 496, 554
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 1 cut(s) 714
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 4 cut(s) 130, 144, 283, 679
BspLI GGNNCC 4 cut(s) 385, 455, 556, 718
BspPI GGATC 3 cut(s) 491, 549, 562
BspTI CTTAAG 2 cut(s) 269, 815
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 2 cut(s) 629, 758
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 4 cut(s) 391, 434, 496, 554
BssT1I CCWWGG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 721
Bst4CI ACNGT 2 cut(s) 179, 542
Bst6I CTCTTC 1 cut(s) 471
BstAFI CTTAAG 2 cut(s) 269, 815
BstC8I GCNNGC 2 cut(s) 366, 505
BstDEI CTNAG 5 cut(s) 23, 117, 131, 291, 687
BstF5I GGATG 2 cut(s) 227, 329
BstKTI GATC 4 cut(s) 394, 437, 499, 557
BstMBI GATC 4 cut(s) 391, 434, 496, 554
BstMWI GCNNNNNNNGC 4 cut(s) 169, 284, 500, 748
BstNI CCWGG 1 cut(s) 721
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 2 cut(s) 227, 329
BtsI GCAGTG 2 cut(s) 111, 205
BtsIMutI CAGTG 6 cut(s) 111, 184, 205, 622, 684, 751
Cac8I GCNNGC 2 cut(s) 366, 505
Csp6I GTAC 2 cut(s) 543, 691
CviAII CATG 1 cut(s) 743
CviQI GTAC 2 cut(s) 543, 691
DdeI CTNAG 5 cut(s) 23, 117, 131, 291, 687
DpnI GATC 4 cut(s) 393, 436, 498, 556
DpnII GATC 4 cut(s) 391, 434, 496, 554
DraI TTTAAA 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 800
EcoRI GAATTC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 653
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 1 cut(s) 746
FaiI YATR 9 cut(s) 44, 90, 285, 439, 472, 474, 578, 587, 744
FatI CATG 1 cut(s) 742
FauNDI CATATG 1 cut(s) 472
FokI GGATG 2 cut(s) 214, 316
FspBI CTAG 1 cut(s) 728
GsuI CTGGAG 2 cut(s) 402, 646
HaeIII GGCC 1 cut(s) 661
HapII CCGG 1 cut(s) 399
Hin1II CATG 1 cut(s) 746
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 5 cut(s) 239, 630, 724, 787, 807
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 347, 359, 381
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 179, 542
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 7 cut(s) 186, 198, 257, 368, 470, 503, 674
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 284, 500, 748
HpyF3I CTNAG 5 cut(s) 23, 117, 131, 291, 687
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 746
Kzo9I GATC 4 cut(s) 391, 434, 496, 554
LmnI GCTCC 2 cut(s) 349, 383
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 728
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 3 cut(s) 173, 445, 620
MalI GATC 4 cut(s) 393, 436, 498, 556
MboI GATC 4 cut(s) 391, 434, 496, 554
MboII GAAGA 2 cut(s) 488, 608
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 5 cut(s) 189, 488, 547, 615, 663
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 7 cut(s) 119, 140, 298, 467, 472, 598, 651
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 32, 270, 563, 816
MslI CAYNNNNRTG 1 cut(s) 756
MspCI CTTAAG 2 cut(s) 269, 815
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 721
MvaI CCWGG 1 cut(s) 721
MwoI GCNNNNNNNGC 4 cut(s) 169, 284, 500, 748
NdeI CATATG 1 cut(s) 472
NdeII GATC 4 cut(s) 391, 434, 496, 554
NlaIII CATG 1 cut(s) 746
NlaIV GGNNCC 4 cut(s) 385, 455, 556, 718
NmuCI GTSAC 2 cut(s) 445, 620
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 746
PfeI GAWTC 5 cut(s) 239, 630, 724, 787, 807
Psp1406I AACGTT 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 719
PspGI CCWGG 1 cut(s) 719
PspN4I GGNNCC 4 cut(s) 385, 455, 556, 718
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 2 cut(s) 544, 692
RsaNI GTAC 2 cut(s) 543, 691
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 4 cut(s) 32, 270, 563, 816
Sau3AI GATC 4 cut(s) 391, 434, 496, 554
ScaI AGTACT 1 cut(s) 692
ScrFI CCNGG 1 cut(s) 721
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 3 cut(s) 269, 359, 815
SmoI CTYRAG 3 cut(s) 269, 359, 815
Sse9I AATT 5 cut(s) 189, 488, 547, 615, 663
SsiI CCGC 1 cut(s) 714
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 719
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 2 cut(s) 179, 542
TaiI ACGT 1 cut(s) 529
TasI AATT 5 cut(s) 189, 488, 547, 615, 663
TatI WGTACW 2 cut(s) 542, 690
TfiI GAWTC 5 cut(s) 239, 630, 724, 787, 807
Tru1I TTAA 4 cut(s) 32, 270, 563, 816
Tru9I TTAA 4 cut(s) 32, 270, 563, 816
TscAI CASTG 6 cut(s) 118, 184, 205, 629, 691, 758
TseFI GTSAC 2 cut(s) 445, 620
Tsp45I GTSAC 2 cut(s) 445, 620
TspDTI ATGAA 4 cut(s) 489, 593, 602, 717
TspRI CASTG 6 cut(s) 118, 184, 205, 629, 691, 758
Vha464I CTTAAG 2 cut(s) 269, 815
XapI RAATTY 2 cut(s) 189, 488
XceI RCATGY 1 cut(s) 746
XspI CTAG 1 cut(s) 728
ZrmI AGTACT 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.