Rorug01G0256000

Uncharacterized conserved protein (DUF2358)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
36558733 .. 36559536
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0256000.1

Sequence Viewer

Length: 270 bp
ATGAGTGAGCTGATGGATGGGTCTGAACCTACTATTGAGATAAAAATAAAGACATTGGATTGCAAACCTATACTCTCAAAGAGCATAAAGAGGTACGTACTCTTGCAACAGCGGCTAATATGCAGAGAAATAGTTCTTAAAGAGAAGCAATTTCTTGCACGGAGAGCACTTCTCATGGGTGGTGTCATGAAGGGACTTGTTCATGTGACAGATTGTGGTATTTTTCTCAAGGGAAACACTATTGAGCAATGGAGCAAATGTGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.2

Weight (kDa)

9.36

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AfaI GTAC 2 cut(s) 95, 99
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 2 cut(s) 7, 11
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 97
BsaXI ACNNNNNCTCC 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 254
BseGI GGATG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 169
BspACI CCGC 1 cut(s) 112
BspHI TCATGA 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 97
BstF5I GGATG 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 112, 164
BstSNI TACGTA 1 cut(s) 97
BtsCI GGATG 1 cut(s) 22
CciI TCATGA 1 cut(s) 186
Csp6I GTAC 2 cut(s) 94, 98
CviAII CATG 3 cut(s) 175, 187, 203
CviJI RGCY 2 cut(s) 10, 115
CviKI_1 RGCY 2 cut(s) 10, 115
CviQI GTAC 2 cut(s) 94, 98
Eco105I TACGTA 1 cut(s) 97
FaeI CATG 3 cut(s) 178, 190, 206
FaiI YATR 6 cut(s) 71, 86, 121, 176, 188, 204
FaqI GGGAC 1 cut(s) 207
FatI CATG 3 cut(s) 174, 186, 202
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
Hin1II CATG 3 cut(s) 178, 190, 206
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 63, 106, 123, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 164
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 3 cut(s) 178, 190, 206
LmnI GCTCC 1 cut(s) 252
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 1 cut(s) 149
MnlI CCTC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 138, 268
MspA1I CMGCKG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 112, 164
NlaIII CATG 3 cut(s) 178, 190, 206
NmuCI GTSAC 1 cut(s) 205
PagI TCATGA 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 97
RsaI GTAC 2 cut(s) 95, 99
RsaNI GTAC 2 cut(s) 94, 98
SaqAI TTAA 2 cut(s) 138, 268
SatI GCNGC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 12, 31, 70, 95, 99
SgeI CNNG 8 cut(s) 115, 167, 171, 187, 199, 209, 215, 241
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 97
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 112
TaiI ACGT 1 cut(s) 99
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 138, 268
Tru9I TTAA 2 cut(s) 138, 268
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 191, 203
TspGWI ACGGA 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.