FvH4_7g15085

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016117
Physical Location & Seq
Reverse (-)
13179440 .. 13180796
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15085.t1

Sequence Viewer

Length: 729 bp
ATGGCAAACATTTTCTCCTATGCTTCCATTACACCACGCCTCACTGCTCAGCACCACTACCTTAATTTCCAGCCAAACCAGCGTTACAGTATCTGCAGAATTCATTGCAGTGGAGAAAACTCAACGAGTAAATCGACTTCCAATAAAGAATCCCAACCTGAAAATGCAAATGTTGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCATTTTTCAACCCACCATCCAAAGTTGAAGCTCCTGAAACTGCTTTTGAGCTTGCAAGAGATGGGTCTGGAGCCGTTGATCGTGCCGGAGTAGTAAAATCAATCAAAGATGACTTCGAAAGATCTTACTTTGTCACAGGGAACCTTACGCTTGATGCTTATGAAGAAGATTGTGAATTTGCTGATCCTGCAAGCTCATTTAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGTTCCCTTTTAACGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGAGATTCAGTTGTATCTTGTCATTCCCTTGGAGGCCAATTCTATCTGCAAGTGGATACACCGAGTACTACTTTGATAAACAGTCAGGGAAAGTGTCCAGGCATGTAGAGCACTGGAATGTTCCCAAGATGGTTTTACTGAAGCAGATTTTGAAGCCAAGCAGGCGATTCTGGCTTAAGAAAACAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

243

Amino Acids

27.63

Weight (kDa)

9.11

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 105 - 213 1.1e-12 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 436
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 99, 398
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 2 cut(s) 454, 602
AflII CTTAAG 2 cut(s) 179, 710
AgsI TTSAA 5 cut(s) 232, 251, 434, 442, 688
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 4 cut(s) 254, 274, 417, 493
AluI AGCT 4 cut(s) 254, 274, 417, 493
Alw21I GWGCWC 1 cut(s) 648
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 93
AoxI GGCC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 99, 398
AsuII TTCGAA 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
Bbv12I GWGCWC 1 cut(s) 648
BccI CCATC 3 cut(s) 247, 278, 658
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 634
BciVI GTATCC 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 94
BfrI CTTAAG 2 cut(s) 179, 710
BfuI GTATCC 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 697
BglII AGATCT 1 cut(s) 344
BlpI GCTNAGC 1 cut(s) 48
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 634
BmiI GGNNCC 3 cut(s) 295, 365, 466
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 2 cut(s) 312, 556
Bpu1102I GCTNAGC 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 563
BsaXI ACNNNNNCTCC 3 cut(s) 29, 529, 559
Bse1I ACTGG 2 cut(s) 539, 653
Bse3DI GCAATG 2 cut(s) 103, 213
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 1 cut(s) 239
BseMI GCAATG 2 cut(s) 103, 213
BseMII CTCAG 2 cut(s) 62, 192
BseNI ACTGG 2 cut(s) 539, 653
BshFI GGCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 1 cut(s) 309
BsnI GGCC 1 cut(s) 571
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 3 cut(s) 301, 344, 406
Bsp1720I GCTNAGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 2 cut(s) 61, 193
BspLI GGNNCC 3 cut(s) 295, 365, 466
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 339
BspTI CTTAAG 2 cut(s) 179, 710
BsrDI GCAATG 2 cut(s) 103, 213
BsrI ACTGG 2 cut(s) 539, 653
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 3 cut(s) 301, 344, 406
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 3 cut(s) 89, 452, 618
BstAFI CTTAAG 2 cut(s) 179, 710
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 276, 415, 698
BstDEI CTNAG 2 cut(s) 48, 201
BstF5I GGATG 1 cut(s) 239
BstKTI GATC 3 cut(s) 304, 347, 409
BstMBI GATC 3 cut(s) 301, 344, 406
BstMWI GCNNNNNNNGC 6 cut(s) 79, 194, 410, 643, 697, 706
BstNI CCWGG 1 cut(s) 634
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 632
BstSFI CTRYAG 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 1 cut(s) 571
BtsCI GGATG 1 cut(s) 239
BtsI GCAGTG 2 cut(s) 42, 115
BtsIMutI CAGTG 4 cut(s) 42, 115, 532, 646
Cac8I GCNNGC 3 cut(s) 276, 415, 698
CaiI CAGNNNCTG 1 cut(s) 93
Csp6I GTAC 2 cut(s) 453, 601
CviAII CATG 1 cut(s) 638
CviQI GTAC 2 cut(s) 453, 601
DdeI CTNAG 2 cut(s) 48, 201
DpnI GATC 3 cut(s) 303, 346, 408
DpnII GATC 3 cut(s) 301, 344, 406
DraI TTTAAA 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 1 cut(s) 641
FaiI YATR 6 cut(s) 21, 195, 384, 488, 497, 639
FatI CATG 1 cut(s) 637
FokI GGATG 1 cut(s) 226
GsuI CTGGAG 2 cut(s) 312, 556
HaeIII GGCC 1 cut(s) 571
HapII CCGG 1 cut(s) 309
Hin1II CATG 1 cut(s) 641
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 3 cut(s) 149, 540, 702
HpaII CCGG 1 cut(s) 309
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 257, 291
HpyCH4III ACNGT 3 cut(s) 89, 452, 618
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 6 cut(s) 96, 108, 167, 278, 413, 584
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 194, 410, 643, 697, 706
HpyF3I CTNAG 2 cut(s) 48, 201
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 1 cut(s) 641
Kzo9I GATC 3 cut(s) 301, 344, 406
LmnI GCTCC 2 cut(s) 259, 293
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 3 cut(s) 83, 355, 530
MalI GATC 3 cut(s) 303, 346, 408
MboI GATC 3 cut(s) 301, 344, 406
MboII GAAGA 3 cut(s) 398, 401, 518
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 6 cut(s) 64, 99, 398, 457, 525, 573
MnlI CCTC 4 cut(s) 50, 208, 508, 561
MseI TTAA 5 cut(s) 63, 180, 423, 473, 711
MslI CAYNNNNRTG 2 cut(s) 108, 651
MspCI CTTAAG 2 cut(s) 179, 710
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 6 cut(s) 79, 194, 410, 643, 697, 706
NdeII GATC 3 cut(s) 301, 344, 406
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 3 cut(s) 295, 365, 466
NmuCI GTSAC 2 cut(s) 355, 530
NspI RCATGY 1 cut(s) 641
NspV TTCGAA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 3 cut(s) 149, 540, 702
Psp1406I AACGTT 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 3 cut(s) 295, 365, 466
PstI CTGCAG 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 2 cut(s) 454, 602
RsaNI GTAC 2 cut(s) 453, 601
RseI CAYNNNNRTG 2 cut(s) 108, 651
SaqAI TTAA 5 cut(s) 63, 180, 423, 473, 711
Sau3AI GATC 3 cut(s) 301, 344, 406
ScaI AGTACT 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 94
SfuI TTCGAA 1 cut(s) 339
SmiMI CAYNNNNRTG 2 cut(s) 108, 651
SmlI CTYRAG 2 cut(s) 179, 710
SmoI CTYRAG 2 cut(s) 179, 710
Sse9I AATT 6 cut(s) 64, 99, 398, 457, 525, 573
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 3 cut(s) 89, 452, 618
TaiI ACGT 1 cut(s) 439
TaqI TCGA 2 cut(s) 134, 339
TasI AATT 6 cut(s) 64, 99, 398, 457, 525, 573
TatI WGTACW 2 cut(s) 452, 600
TfiI GAWTC 3 cut(s) 149, 540, 702
Tru1I TTAA 5 cut(s) 63, 180, 423, 473, 711
Tru9I TTAA 5 cut(s) 63, 180, 423, 473, 711
TscAI CASTG 4 cut(s) 49, 115, 539, 653
TseFI GTSAC 2 cut(s) 355, 530
Tsp45I GTSAC 2 cut(s) 355, 530
TspDTI ATGAA 5 cut(s) 92, 213, 399, 503, 512
TspRI CASTG 4 cut(s) 49, 115, 539, 653
Vha464I CTTAAG 2 cut(s) 179, 710
XapI RAATTY 2 cut(s) 99, 398
XceI RCATGY 1 cut(s) 641
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.