MD01G1069500.v1.1

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016117
Physical Location & Seq
Reverse (-)
17365154 .. 17367069
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1069500.v1.1.491

Sequence Viewer

Length: 735 bp
ATGGCGCATAGTTTCTCCTACGCTTCCATTCCTCAGGGCCTCACCGCCCAACCCCAACACCAACACCACCTCAGTTTCCCGCCAAACCCTCCTCACAACGTCTACAGATTTCGTTGCAGAGCAGAAAACCGAACAACTAACTCCCCAACCGACAAAGAATCTCAACCTCAAAACGCACTGCTTAAGGTGGCCTGGTACAGCTCCGAGCTTCTTGGAATTGCCACGTCGTTTTTTCGGCCACCGTCTGCTTCCGAACCTCCTCCTGGTCCCGCCCTCGAGCTTGGAAGAGACGGGTCGGGAGCGGTTGATCGTGCGGTGGTAGTTAAATCCATCAAAGAAGACTTTGAGAGATCATACTTTGTCACAGGGAACCTTAGGCTTGATGCATATGAGGAGGATTGTGAGTTTGCTGATCCAGCAACTTCGTTCAGAGGCCTGCAGCGTTTCAAGAGGAACTGCACAAATTTTGGATCACTTTTAGTCAAGTCAAATATGAAGCTCATGAAGTGGGAAGATTTTGAGAATAAAGGAATTGGTCACTGGAGATTTAGTTGTATCTTGACATTCCCTTGGAGGCCCATTCTATCTGCGAGTGGATACACAGAGTATTACTTTGATGAAGTGTCAGGAAAAGTGTGCAGGCATGTAGAGCACTGGAATGTTCCTAAAATGGTTCTACTGAAGCAAATTCTAAAGCCGAGTCGTAGGTTTTGGCCTAAGAAATCAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

245

Amino Acids

27.87

Weight (kDa)

9.28

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 106 - 215 4.4e-13 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 102
AciI CCGC 5 cut(s) 45, 80, 270, 302, 314
AclWI GGATC 2 cut(s) 407, 478
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 2 cut(s) 463, 687
AcuI CTGAAG 1 cut(s) 701
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 263
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 448
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 2 cut(s) 191, 262
AluBI AGCT 4 cut(s) 201, 208, 280, 499
AluI AGCT 4 cut(s) 201, 208, 280, 499
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 2 cut(s) 407, 478
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 6 cut(s) 37, 189, 236, 433, 575, 713
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 2 cut(s) 463, 687
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 37, 266, 576
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 266
AxyI CCTNAGG 2 cut(s) 33, 374
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 193, 264
BciVI GTATCC 1 cut(s) 590
BcoDI GTCTC 1 cut(s) 282
BfmI CTRYAG 2 cut(s) 103, 437
BfrI CTTAAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 590
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
Bme1390I CCNGG 2 cut(s) 193, 264
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 37, 266, 576
BmiI GGNNCC 2 cut(s) 268, 371
BmrFI CCNGG 2 cut(s) 193, 264
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 545, 659
Bse21I CCTNAGG 2 cut(s) 33, 374
BseBI CCWGG 2 cut(s) 193, 264
BseDI CCNNGG 1 cut(s) 569
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 47, 85
BseNI ACTGG 2 cut(s) 545, 659
BseRI GAGGAG 3 cut(s) 81, 249, 407
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 2 cut(s) 442, 658
BshFI GGCC 6 cut(s) 39, 191, 238, 435, 577, 715
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 6 cut(s) 39, 191, 238, 435, 577, 715
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 4 cut(s) 307, 350, 412, 470
BspACI CCGC 5 cut(s) 45, 80, 270, 302, 314
BspANI GGCC 6 cut(s) 39, 191, 238, 435, 577, 715
BspCNI CTCAG 2 cut(s) 46, 84
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 268, 371
BspMAI CTGCAG 1 cut(s) 441
BspPI GGATC 2 cut(s) 407, 478
BspTI CTTAAG 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 545, 659
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 4 cut(s) 307, 350, 412, 470
BssT1I CCWWGG 1 cut(s) 569
Bst2UI CCWGG 2 cut(s) 193, 264
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 280
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 437, 641
BstDEI CTNAG 4 cut(s) 33, 71, 374, 717
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 310, 353, 415, 473
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 307, 350, 412, 470
BstMWI GCNNNNNNNGC 2 cut(s) 416, 649
BstNI CCWGG 2 cut(s) 193, 264
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 191, 262
BstSFI CTRYAG 2 cut(s) 103, 437
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 345
Bsu36I CCTNAGG 2 cut(s) 33, 374
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 6 cut(s) 39, 191, 238, 435, 577, 715
BtrI CACGTC 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 176, 538, 652
Cac8I GCNNGC 2 cut(s) 437, 641
CciI TCATGA 1 cut(s) 501
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 37, 266, 576
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 502, 644
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 33, 71, 374, 717
DpnI GATC 4 cut(s) 309, 352, 414, 472
DpnII GATC 4 cut(s) 307, 350, 412, 470
EaeI YGGCCR 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 569
Eco147I AGGCCT 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 701
Eco81I CCTNAGG 2 cut(s) 33, 374
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 191, 262
EcoT14I CCWWGG 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 569
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 2 cut(s) 505, 647
FaiI YATR 7 cut(s) 9, 355, 388, 390, 494, 503, 645
FaqI GGGAC 1 cut(s) 252
FatI CATG 2 cut(s) 501, 643
FauI CCCGC 2 cut(s) 87, 277
FauNDI CATATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 440
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 440
GsuI CTGGAG 1 cut(s) 562
HaeIII GGCC 6 cut(s) 39, 191, 238, 435, 577, 715
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 505, 647
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 158, 700
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 205, 253, 431
Hpy188III TCNNGA 5 cut(s) 297, 448, 502, 559, 627
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 2 cut(s) 99, 224
HpyCH4V TGCA 5 cut(s) 117, 386, 439, 459, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 649
HpyF3I CTNAG 4 cut(s) 33, 71, 374, 717
HpySE526I ACGT 2 cut(s) 99, 224
Hsp92II CATG 2 cut(s) 505, 647
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 307, 350, 412, 470
LmnI GCTCC 2 cut(s) 206, 299
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 373
MaeII ACGT 2 cut(s) 99, 224
MaeIII GTNAC 2 cut(s) 361, 536
MalI GATC 4 cut(s) 309, 352, 414, 472
MbiI CCGCTC 1 cut(s) 302
MboI GATC 4 cut(s) 307, 350, 412, 470
MboII GAAGA 3 cut(s) 297, 350, 524
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 4 cut(s) 216, 463, 531, 687
MlyI GAGTC 1 cut(s) 709
Mph1103I ATGCAT 1 cut(s) 388
MseI TTAA 2 cut(s) 183, 324
MslI CAYNNNNRTG 1 cut(s) 657
MspCI CTTAAG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 193, 264
MvaI CCWGG 2 cut(s) 193, 264
MwoI GCNNNNNNNGC 2 cut(s) 416, 649
NdeI CATATG 1 cut(s) 388
NdeII GATC 4 cut(s) 307, 350, 412, 470
NlaIII CATG 2 cut(s) 505, 647
NlaIV GGNNCC 2 cut(s) 268, 371
NmeAIII GCCGAG 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 361, 536
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 275
PagI TCATGA 1 cut(s) 501
PceI AGGCCT 1 cut(s) 435
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 191, 262
PspGI CCWGG 2 cut(s) 191, 262
PspN4I GGNNCC 2 cut(s) 268, 371
PspPI GGNCC 3 cut(s) 37, 266, 576
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 441
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 2 cut(s) 183, 324
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 4 cut(s) 307, 350, 412, 470
Sau96I GGNCC 3 cut(s) 37, 266, 576
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 193, 264
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 2 cut(s) 103, 437
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 182, 275
SmoI CTYRAG 2 cut(s) 182, 275
Sse9I AATT 4 cut(s) 216, 463, 531, 687
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 5 cut(s) 45, 80, 270, 302, 314
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 191, 262
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 2 cut(s) 102, 227
TaqI TCGA 1 cut(s) 276
TasI AATT 4 cut(s) 216, 463, 531, 687
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 183, 324
Tru9I TTAA 2 cut(s) 183, 324
TscAI CASTG 3 cut(s) 183, 545, 659
TseFI GTSAC 2 cut(s) 361, 536
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 2 cut(s) 361, 536
TspDTI ATGAA 3 cut(s) 509, 518, 633
TspRI CASTG 3 cut(s) 183, 545, 659
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 2 cut(s) 463, 687
XceI RCATGY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.