Prupe.2G175600_v2.0.a1

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016117
Physical Location & Seq
Reverse (-)
22125839 .. 22128026
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G175600.1

Sequence Viewer

Length: 738 bp
ATGGCAAGTATTTTCTCCTATGCTTCCATTACACCCCACCTCACTGCCCGGCACAACAAGAAGTACGTCAATTTCCAGCCAAACCATCGATACAGTGTCTACAGATTTCGTTGCAGTGGAGAAAAGTTAAACCAAACAAGTGATTCACCAACTGATAAACAATCCCAACCTGAAAAGGCACTGCTTAAGGTGGCTTGGTATAGCTCTGAGCTTCTGGGAATTGCCACGTCATTTTTCCGGCCACCATCGAAAGCCGAAGCTCCTGAAACTGCAGCTCTTGAGCTTGCAAGAGATGGGTCAGGAGCTGTTGATCGAGCCATGGTAGTAAAATCCATCAAACAAGACTTTGAAAGATCATACTTTGTCACAGGGAACCTTACCCTTGATGCATATGAAGAGGATTGTGAATTTGCTGATCCAGCAAGTTCATTCAAAGGGCTTCAGCGTTTCAAAAGGAACTGCACAAATTTTGGGTCCCTTTTAACGAAGTCCAATATGAAGCTCATGAAGTGGGAAGATTTTGGGGATAAAGGAATTGGTCACTGGAGATTTAGTTGCATCTTGTCATTCCCTTGGAAGCCCATTCTATCTGCAAGTGGATACACAGAGTATTATTTTGATGAATTCTCTGGGAAGGTTTGCAGGCATGTAGAGCATTGGAATGTTCCCAAAATGGTTTTACTGAAGCAAATTCTGAAGCCAAGCAGAGGGTTTTGGCTTAAGAAAACAGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

246

Amino Acids

27.99

Weight (kDa)

9.33

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 1 cut(s) 239
AcsI RAATTY 4 cut(s) 407, 466, 623, 690
AcuI CTGAAG 3 cut(s) 425, 704, 716
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 707
AflII CTTAAG 2 cut(s) 185, 719
AgsI TTSAA 3 cut(s) 350, 433, 451
AjiI CACGTC 1 cut(s) 228
AluBI AGCT 7 cut(s) 204, 211, 260, 275, 283, 305, 502
AluI AGCT 7 cut(s) 204, 211, 260, 275, 283, 305, 502
AlwI GGATC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 4 cut(s) 407, 466, 623, 690
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 284
BccI CCATC 4 cut(s) 93, 253, 287, 341
BciVI GTATCC 1 cut(s) 593
BcnI CCSGG 1 cut(s) 49
BfmI CTRYAG 2 cut(s) 100, 270
BfrI CTTAAG 2 cut(s) 185, 719
BfuI GTATCC 1 cut(s) 593
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 474
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 3 cut(s) 374, 475, 476
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 2 cut(s) 376, 567
BpmI CTGGAG 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 318, 572
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse1I ACTGG 1 cut(s) 548
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 318, 572
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 445
BshFI GGCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 88
BsiSI CCGG 2 cut(s) 49, 238
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 707
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 3 cut(s) 310, 353, 415
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 88
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 374, 475, 476
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 1 cut(s) 410
BspTI CTTAAG 2 cut(s) 185, 719
BsrI ACTGG 1 cut(s) 548
BssECI CCNNGG 2 cut(s) 318, 572
BssMI GATC 3 cut(s) 310, 353, 415
BssT1I CCWWGG 2 cut(s) 318, 572
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 390
BstAFI CTTAAG 2 cut(s) 185, 719
BstC8I GCNNGC 2 cut(s) 285, 644
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 318
BstKTI GATC 3 cut(s) 313, 356, 418
BstMBI GATC 3 cut(s) 310, 353, 415
BstMWI GCNNNNNNNGC 2 cut(s) 419, 652
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 2 cut(s) 100, 270
BstV1I GCAGC 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 88
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 228
BtsI GCAGTG 3 cut(s) 42, 121, 179
BtsIMutI CAGTG 5 cut(s) 42, 100, 121, 179, 541
Cac8I GCNNGC 2 cut(s) 285, 644
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 474
ClaI ATCGAT 1 cut(s) 88
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 319, 505, 647
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 207
DpnI GATC 3 cut(s) 312, 355, 417
DpnII GATC 3 cut(s) 310, 353, 415
EaeI YGGCCR 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 318, 572
Eco47I GGWCC 1 cut(s) 474
Eco57I CTGAAG 3 cut(s) 425, 704, 716
EcoO109I RGGNCCY 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 623
EcoT14I CCWWGG 2 cut(s) 318, 572
EcoT22I ATGCAT 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 318, 572
FaeI CATG 3 cut(s) 322, 508, 650
FaiI YATR 9 cut(s) 21, 201, 320, 358, 391, 393, 497, 506, 648
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 318, 504, 646
FauNDI CATATG 1 cut(s) 391
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 1 cut(s) 241
HapII CCGG 2 cut(s) 49, 238
Hin1II CATG 3 cut(s) 322, 508, 650
HinfI GANTC 1 cut(s) 143
HpaII CCGG 2 cut(s) 49, 238
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 208, 696
Hpy188III TCNNGA 4 cut(s) 263, 278, 300, 505
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 628
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 2 cut(s) 66, 227
HpyCH4V TGCA 8 cut(s) 114, 272, 287, 389, 462, 558, 593, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 652
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 2 cut(s) 66, 227
Hsp92II CATG 3 cut(s) 322, 508, 650
KflI GGGWCCC 1 cut(s) 474
Kzo9I GATC 3 cut(s) 310, 353, 415
LmnI GCTCC 2 cut(s) 265, 302
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 2 cut(s) 376, 567
MaeII ACGT 2 cut(s) 66, 227
MaeIII GTNAC 2 cut(s) 364, 539
MalI GATC 3 cut(s) 312, 355, 417
MboI GATC 3 cut(s) 310, 353, 415
MboII GAAGA 2 cut(s) 407, 527
MluCI AATT 7 cut(s) 70, 219, 407, 466, 534, 623, 690
MnlI CCTC 3 cut(s) 50, 391, 701
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 4 cut(s) 128, 186, 482, 720
MslI CAYNNNNRTG 1 cut(s) 660
MspCI CTTAAG 2 cut(s) 185, 719
MspI CCGG 2 cut(s) 49, 238
MspR9I CCNGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 419, 652
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 391
NdeII GATC 3 cut(s) 310, 353, 415
NlaIII CATG 3 cut(s) 322, 508, 650
NlaIV GGNNCC 3 cut(s) 374, 475, 476
NmuCI GTSAC 2 cut(s) 364, 539
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 1 cut(s) 650
PagI TCATGA 1 cut(s) 504
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 374, 475, 476
PspPI GGNCC 1 cut(s) 474
PspPPI RGGWCCY 1 cut(s) 474
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 4 cut(s) 128, 186, 482, 720
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 3 cut(s) 310, 353, 415
Sau96I GGNCC 1 cut(s) 474
ScrFI CCNGG 1 cut(s) 49
SfaNI GCATC 2 cut(s) 376, 567
SfcI CTRYAG 2 cut(s) 100, 270
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 3 cut(s) 185, 278, 719
SmoI CTYRAG 3 cut(s) 185, 278, 719
Sse9I AATT 7 cut(s) 70, 219, 407, 466, 534, 623, 690
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 318, 572
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 2 cut(s) 69, 230
TaqI TCGA 3 cut(s) 88, 248, 313
TasI AATT 7 cut(s) 70, 219, 407, 466, 534, 623, 690
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 4 cut(s) 128, 186, 482, 720
Tru9I TTAA 4 cut(s) 128, 186, 482, 720
TscAI CASTG 5 cut(s) 49, 100, 121, 186, 548
TseFI GTSAC 2 cut(s) 364, 539
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 2 cut(s) 364, 539
TspDTI ATGAA 5 cut(s) 408, 417, 512, 521, 636
TspRI CASTG 5 cut(s) 49, 100, 121, 186, 548
Vha464I CTTAAG 2 cut(s) 185, 719
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 4 cut(s) 407, 466, 623, 690
XceI RCATGY 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.