AT2G46130
WRKY Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008521
Physical Location & Seq
Forward (+)
18957212 .. 18957925
714 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46130.2

Sequence Viewer

Length: 330 bp
ATGAATGGCCTCGTCGACTCTTCTCGAGATAAGAAGATGAAAAATCCGCGATTTTCGTTTCGCACAAAGAGTGATGCAGATATTCTCGATGATGGTTATCGATGGAGAAAGTACGGTCAGAAATCCGTCAAGAACAGCTTGTATCCCAGGAGCTATTATAGATGCACACAACACATGTGTAACGTGAAGAAGCAAGTTCAGAGGCTGTCGAAGGAGACGAGCATTGTGGAGACAACTTATGAAGGAATCCATAACCATCCTTGTGAGGAGCTCATGCAAACCCTAACTCCTCTTCTTCATCAATTGCAGTTCCTCTCTAAGTTCACCTAA

Protein Analysis

109

Amino Acids

12.95

Weight (kDa)

9.57

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 30 - 83 9.6e-20 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 47
AfaI GTAC 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 174
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 3 cut(s) 138, 153, 271
AluI AGCT 3 cut(s) 138, 153, 271
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 209, 224
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 24
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 3 cut(s) 86, 96, 264
BciT130I CCWGG 1 cut(s) 148
BciVI GTATCC 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 209, 224
BfuI GTATCC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 64, 152
Bsa29I ATCGAT 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 279, 281
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 209, 224
BsmBI CGTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 273
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 9
BspDI ATCGAT 1 cut(s) 100
BspFNI CGCG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 25, 297
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 209, 224
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 146
BstUI CGCG 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 100
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 100
BtsCI GGATG 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 100
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 175, 274
CviJI RGCY 5 cut(s) 9, 138, 153, 205, 271
CviKI_1 RGCY 5 cut(s) 9, 138, 153, 205, 271
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 25, 297
EarI CTCTTC 2 cut(s) 25, 297
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 2 cut(s) 178, 277
FaiI YATR 5 cut(s) 159, 176, 240, 252, 275
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 2 cut(s) 174, 273
FblI GTMKAC 1 cut(s) 15
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 2 cut(s) 178, 277
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 17, 246
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 16, 324
Hpy188I TCNGA 2 cut(s) 120, 201
Hpy188III TCNNGA 4 cut(s) 24, 26, 86, 130
Hpy8I GTNNAC 2 cut(s) 16, 324
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 205, 236
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 77, 165, 277, 307
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 178, 277
LmnI GCTCC 2 cut(s) 150, 268
LpnPI CCDG 2 cut(s) 133, 160
LweI GCATC 2 cut(s) 64, 152
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 5 cut(s) 12, 46, 199, 284, 287
MfeI CAATTG 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 302
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 5 cut(s) 20, 195, 259, 300, 323
MslI CAYNNNNRTG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 148
MunI CAATTG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 49
NlaIII CATG 2 cut(s) 178, 277
NspI RCATGY 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 24
PciI ACATGT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PfeI GAWTC 1 cut(s) 246
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 205
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 273
SalI GTCGAC 1 cut(s) 14
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 273
SetI ASST 5 cut(s) 140, 155, 186, 273, 329
SfaNI GCATC 2 cut(s) 64, 152
Sfr274I CTCGAG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 302
SsiI CCGC 1 cut(s) 47
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 186
TaqI TCGA 5 cut(s) 15, 25, 87, 100, 209
TasI AATT 1 cut(s) 302
TfiI GAWTC 1 cut(s) 246
TspDTI ATGAA 4 cut(s) 17, 53, 255, 287
TspGWI ACGGA 1 cut(s) 115
XceI RCATGY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.