Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008521

Physical Location & Seq

Genomic Coordinates Reverse (-)

14137588 .. 14139108

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGGATCATCATCAACAGCATAATCCACCTCCATTAACCTCCCAATTGCCGCCCTTATCGTTACCATTCTTGTTGCCCCCGCCACCCCAAAACCCTCCTCTTCCTTCTCCCTATCTCTTCACACCCTCTTCATCCTCCTCACTGATGACCAACCCACCTGATCTTCTAGACATTGATTGGGTCAGCCTTCTCTCTGGTGGTACTCAGGCGGCTGGCTGGCTTAGTCATGATCAGATTAATAGTTTTAAGCCTATGGCTATGGTGGACAAAAATATTAGTGGCTCTGATGGGACTATTATTAGTGAAGCTGCAGATCAGGAAGAAAAGGTGGGTATTAAAAGGAAAGCTGGGGGTAGGATGAGAAAAGCAGCGGCAAGCCGACCTAGGTTTGCGTTCCATACTCGGAGTACGGATGATATTCTTGATGATGGCTACCGCTGGAGAAAATATGGACAGAAAGCCGTCAAGAATAGCTCATATCCCAGGAGCTATTATCGCTGCACACATCACACATGCAATGTGAAAAAACAGGTCCAGAGGCTGTCTAAAGACACGAGCATCGTCGTGACAACGTATGAAGGAATTCACAATCATCCTTGCGAGAAACTCATGGAAACCCTAACTCCTCTACTGAAGCAAATGCAGTTTCTCTCTAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

222

Amino Acids

24.88

Weight (kDa)

9.24

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64000 AT2G46130 AT2G46130 AT5G41570
fragaria_vesca	FvH4_7g15430
malus_domestica	MD01G1071600.v1.1 MD01G1123900.v1.1 MD07G1131000.v1.1
prunus_persica	Prupe.2G177800_v2.0.a1 Prupe.2G231300_v2.0.a1
pyrus_communis	pycom01g10080 pycom01g15040 pycom07g12810
rosa_chinensis	RchiOBHm_Chr1g0357751
rosa_laevigata	RLG00000028000
rosa_multiflora	Rmu_ssc0000399.1_g000021
rosa_roxburghii	Rroxscaffold_4G00298540
rosa_rugosa	Rorug01G0258300
rosa_samantha	Rh1AG272200 Rh1BG239400 Rh1CG256100 Rh1DG267700
rosa_wichuraiana	Rw1G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	53, 83, 212, 374, 439
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	2 cut(s)	205, 412
AjnI	CCWGG	1 cut(s)	485
AluBI	AGCT	4 cut(s)	311, 350, 477, 492
AluI	AGCT	4 cut(s)	311, 350, 477, 492
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	311, 371, 501
ApoI	RAATTY	1 cut(s)	585
AseI	ATTAAT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	585
AspA2I	CCTAGG	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	535
AvrII	CCTAGG	1 cut(s)	386
BauI	CACGAG	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	298, 383, 488
BccI	CCATC	2 cut(s)	284, 425
BceAI	ACGGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	487
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	3 cut(s)	170, 387, 657
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	6 cut(s)	53, 213, 312, 372, 375, 502
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	6 cut(s)	54, 214, 313, 373, 376, 503
Bme1390I	CCNGG	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	386, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bse3DI	GCAATG	1 cut(s)	526
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	386, 485
BseGI	GGATG	4 cut(s)	134, 366, 421, 595
BseJI	GATNNNNATC	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	3 cut(s)	90, 130, 618
BseXI	GCAGC	3 cut(s)	298, 383, 488
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	7, 163, 232, 316
BspACI	CCGC	5 cut(s)	53, 83, 212, 374, 439
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	386, 485
BssMI	GATC	4 cut(s)	7, 163, 232, 316
BssSI	CACGAG	1 cut(s)	556
BssT1I	CCWWGG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	487
Bst6I	CTCTTC	3 cut(s)	108, 125, 136
BstC8I	GCNNGC	3 cut(s)	217, 221, 379
BstDEI	CTNAG	2 cut(s)	207, 224
BstF5I	GGATG	4 cut(s)	134, 366, 421, 595
BstKTI	GATC	4 cut(s)	10, 166, 235, 319
BstMBI	GATC	4 cut(s)	7, 163, 232, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	298, 383, 488
BtsCI	GGATG	4 cut(s)	134, 366, 421, 595
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	217, 221, 379
CaiI	CAGNNNCTG	1 cut(s)	544
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	204, 411
CviAII	CATG	3 cut(s)	230, 516, 613
CviQI	GTAC	2 cut(s)	204, 411
DdeI	CTNAG	2 cut(s)	207, 224
DpnI	GATC	4 cut(s)	9, 165, 234, 318
DpnII	GATC	4 cut(s)	7, 163, 232, 316
Eam1104I	CTCTTC	3 cut(s)	108, 125, 136
EarI	CTCTTC	3 cut(s)	108, 125, 136
Eco130I	CCWWGG	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	3 cut(s)	233, 519, 616
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	229, 515, 612
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	53, 213, 312, 372, 375, 502
FokI	GGATG	4 cut(s)	121, 373, 428, 582
Fsp4HI	GCNGC	6 cut(s)	53, 213, 312, 372, 375, 502
FspBI	CTAG	3 cut(s)	170, 387, 657
GluI	GCNGC	6 cut(s)	53, 213, 312, 372, 375, 502
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	463
Hin1II	CATG	3 cut(s)	233, 519, 616
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	237, 289, 408
Hpy188III	TCNNGA	7 cut(s)	170, 230, 320, 425, 469, 538, 568
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	3 cut(s)	117, 200, 575
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	314, 504, 519, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	2 cut(s)	207, 224
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	3 cut(s)	233, 519, 616
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	7, 163, 232, 316
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	3 cut(s)	298, 383, 488
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	3 cut(s)	170, 387, 657
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	63, 568
MalI	GATC	4 cut(s)	9, 165, 234, 318
MboI	GATC	4 cut(s)	7, 163, 232, 316
MboII	GAAGA	5 cut(s)	95, 112, 123, 158, 335
MfeI	CAATTG	1 cut(s)	47
MluCI	AATT	2 cut(s)	47, 585
MnlI	CCTC	9 cut(s)	42, 52, 108, 111, 139, 148, 151, 534, 639
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	5 cut(s)	38, 240, 249, 339, 664
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	2 cut(s)	374, 441
MspR9I	CCNGG	1 cut(s)	487
MunI	CAATTG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	498
NdeII	GATC	4 cut(s)	7, 163, 232, 316
NlaIII	CATG	3 cut(s)	233, 519, 616
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	519
PagI	TCATGA	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	585
PkrI	GCNGC	6 cut(s)	54, 214, 313, 373, 376, 503
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	535
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	205, 412
RsaNI	GTAC	2 cut(s)	204, 411
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	5 cut(s)	38, 240, 249, 339, 664
SatI	GCNGC	6 cut(s)	53, 213, 312, 372, 375, 502
Sau3AI	GATC	4 cut(s)	7, 163, 232, 316
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	487
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	566
Sse9I	AATT	2 cut(s)	47, 585
SsiI	CCGC	5 cut(s)	53, 83, 212, 374, 439
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	3 cut(s)	170, 387, 657
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	386
TaiI	ACGT	1 cut(s)	578
TasI	AATT	2 cut(s)	47, 585
TauI	GCSGC	3 cut(s)	55, 215, 377
Tru1I	TTAA	5 cut(s)	38, 240, 249, 339, 664
Tru9I	TTAA	5 cut(s)	38, 240, 249, 339, 664
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	3 cut(s)	311, 371, 501
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	123, 594
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	535
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	585
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	519
XmaJI	CCTAGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	3 cut(s)	170, 387, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.