Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008521

Physical Location & Seq

Genomic Coordinates Forward (+)

10937996 .. 10940656

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAAGATCCTCATCAACAGCATAATCCACCTCCATTAACCTCCCAATCGCTGCCCTTGTCATTACCATTCTTGTCACCGCCGCCACCCCAAAACCCTCCTCCCTATCTCTTCACACCCTCTTCATCCTCCTCATTGATGACCAACCCTCCCGATCTTCTAGACATTGATTGGGTTAGCCTTCTCTCTGGTGGTACTCAAGCGGCAGGCGGGTTTAATCATGATCAGATTAATAGTTTTAAGCCTATGGCTATGATGGACAATAATATTAGTGGCTCTGCTGGGAATACTGGAGCTGATCAGGAAGAAAAGGTGGGTGTTAAAAGGAAAGGTGGGGGTAAAATGAGAAAACCAGCAGCTGGCCGGCCTAGGTTTGCGTTTCAGACTCGAAGTGAGGATGATATTCTTGATGATGGCTACCGCTGGAGAAAATATGGTCAGAAAGCCGTCAAGGACAGTTCATATCCCAGGAGCTACTACCGCTGCACACATCACACATGCAATGTGAAAAAACAGGTCCAGAGGCTGTCTAAAGACACGAGCATTGTCATGACAACGTATGAAGGAATCCACAATCATCCTTGCGAGAAACTCATGGAAACCCTAACTCCTCTACTGAAGCAAATGCAATTCCTCTCTAGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

216

Amino Acids

24.06

Weight (kDa)

9.1

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64000 AT2G46130 AT2G46130 AT5G41570
fragaria_vesca	FvH4_7g15430
malus_domestica	MD01G1071600.v1.1 MD01G1123900.v1.1 MD07G1131000.v1.1
prunus_persica	Prupe.2G177800_v2.0.a1 Prupe.2G231300_v2.0.a1
pyrus_communis	pycom01g10080 pycom01g15040 pycom07g12810
rosa_chinensis	RchiOBHm_Chr1g0357751
rosa_laevigata	RLG00000028000
rosa_multiflora	Rmu_ssc0000399.1_g000021
rosa_roxburghii	Rroxscaffold_4G00298540
rosa_rugosa	Rorug01G0258300
rosa_samantha	Rh1AG272200 Rh1BG239400 Rh1CG256100 Rh1DG267700
rosa_wichuraiana	Rw1G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AciI	CCGC	6 cut(s)	80, 83, 203, 210, 421, 481
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	3 cut(s)	296, 359, 474
AluI	AGCT	3 cut(s)	296, 359, 474
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	2 cut(s)	359, 526
AoxI	GGCC	2 cut(s)	361, 365
ApeKI	GCWGC	3 cut(s)	52, 356, 483
AseI	ATTAAT	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	517
AvrII	CCTAGG	1 cut(s)	368
BauI	CACGAG	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	39, 368, 470
BccI	CCATC	2 cut(s)	250, 407
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	2 cut(s)	223, 298
BfaI	CTAG	3 cut(s)	161, 369, 639
BisI	GCNGC	5 cut(s)	53, 83, 204, 357, 484
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	5 cut(s)	54, 84, 205, 358, 485
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	469
BpmI	CTGGAG	2 cut(s)	312, 445
BpuEI	CTTGAG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	368, 467
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 592, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	368, 467
BseGI	GGATG	3 cut(s)	125, 403, 577
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	508
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	3 cut(s)	90, 121, 600
BseXI	GCAGC	3 cut(s)	39, 368, 470
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	363, 367
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	359
BsnI	GGCC	2 cut(s)	363, 367
Bsp143I	GATC	4 cut(s)	7, 154, 223, 298
BspACI	CCGC	6 cut(s)	80, 83, 203, 210, 421, 481
BspANI	GGCC	2 cut(s)	363, 367
BspHI	TCATGA	2 cut(s)	220, 549
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	368, 467
BssMI	GATC	4 cut(s)	7, 154, 223, 298
BssSI	CACGAG	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	538
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	2 cut(s)	116, 127
BstC8I	GCNNGC	3 cut(s)	208, 361, 365
BstF5I	GGATG	3 cut(s)	125, 403, 577
BstKTI	GATC	4 cut(s)	10, 157, 226, 301
BstMBI	GATC	4 cut(s)	7, 154, 223, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNI	CCWGG	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	39, 368, 470
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	363, 367
BtsCI	GGATG	3 cut(s)	125, 403, 577
Cac8I	GCNNGC	3 cut(s)	208, 361, 365
CaiI	CAGNNNCTG	2 cut(s)	359, 526
CciI	TCATGA	2 cut(s)	220, 549
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	4 cut(s)	221, 498, 550, 595
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	4 cut(s)	9, 156, 225, 300
DpnII	GATC	4 cut(s)	7, 154, 223, 298
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	116, 127
EarI	CTCTTC	2 cut(s)	116, 127
Eco130I	CCWWGG	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	4 cut(s)	224, 501, 553, 598
FatI	CATG	4 cut(s)	220, 497, 549, 594
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	2 cut(s)	223, 298
Fnu4HI	GCNGC	5 cut(s)	53, 83, 204, 357, 484
FokI	GGATG	3 cut(s)	112, 410, 564
FseI	GGCCGGCC	1 cut(s)	367
Fsp4HI	GCNGC	5 cut(s)	53, 83, 204, 357, 484
FspBI	CTAG	3 cut(s)	161, 369, 639
GluI	GCNGC	5 cut(s)	53, 83, 204, 357, 484
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	312, 445
HaeIII	GGCC	2 cut(s)	363, 367
HapII	CCGG	1 cut(s)	364
Hin1II	CATG	4 cut(s)	224, 501, 553, 598
HinfI	GANTC	2 cut(s)	385, 567
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	228, 384, 441
Hpy188III	TCNNGA	7 cut(s)	152, 161, 221, 302, 407, 520, 550
HpyAV	CCTTC	2 cut(s)	191, 557
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	3 cut(s)	486, 501, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	224, 501, 553, 598
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Ksp22I	TGATCA	2 cut(s)	223, 298
Kzo9I	GATC	4 cut(s)	7, 154, 223, 298
LmnI	GCTCC	2 cut(s)	293, 471
Lsp1109I	GCAGC	3 cut(s)	39, 368, 470
MaeI	CTAG	3 cut(s)	161, 369, 639
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	4 cut(s)	9, 156, 225, 300
MboI	GATC	4 cut(s)	7, 154, 223, 298
MboII	GAAGA	5 cut(s)	17, 103, 114, 149, 317
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	363
MseI	TTAA	5 cut(s)	38, 216, 231, 240, 321
MslI	CAYNNNNRTG	1 cut(s)	548
MspA1I	CMGCKG	3 cut(s)	359, 423, 483
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	480
NaeI	GCCGGC	1 cut(s)	365
NdeII	GATC	4 cut(s)	7, 154, 223, 298
NgoMIV	GCCGGC	1 cut(s)	363
NlaIII	CATG	4 cut(s)	224, 501, 553, 598
NmuCI	GTSAC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	501
PagI	TCATGA	2 cut(s)	220, 549
PdiI	GCCGGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	567
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	54, 84, 205, 358, 485
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	359, 526
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	359
RigI	GGCCGGCC	1 cut(s)	367
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	5 cut(s)	38, 216, 231, 240, 321
SatI	GCNGC	5 cut(s)	53, 83, 204, 357, 484
Sau3AI	GATC	4 cut(s)	7, 154, 223, 298
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	629
SsiI	CCGC	6 cut(s)	80, 83, 203, 210, 421, 481
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	3 cut(s)	161, 369, 639
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	1 cut(s)	388
TasI	AATT	1 cut(s)	629
TauI	GCSGC	2 cut(s)	85, 206
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	5 cut(s)	38, 216, 231, 240, 321
Tru9I	TTAA	5 cut(s)	38, 216, 231, 240, 321
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	3 cut(s)	52, 356, 483
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	114, 450, 576
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	517
VspI	ATTAAT	1 cut(s)	231
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	368
XspI	CTAG	3 cut(s)	161, 369, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.