Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008521

Physical Location & Seq

Genomic Coordinates Reverse (-)

18364113 .. 18365700

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAGGAGGTCAAGAACATATGAATCCACCTCCAACCTCATCATCAACACCGCCGCTATCATTACCGTTAATCCTGCCGCCGCAAAACCTTTCCTACCAGCTCTTCACACCCTCAGGATTGAACCCTCCTCCTCTTCCTCTTCTACAGCCTCATGATCATCAATCCCTTAACCCTCTAGACATTGACTGGATCAGCCTTCTCTCTGGTCAAGCAGGTCATCATGGGCTAGTCAGTCATGATCAGATTAATAACTATAGGGCTGTGACTGGTATGGTGGATATCAGTACTGCCTCTGGCTCCGCTGGTGAGAATACTATTGAAGGTGATGATGATCGGGAACAAAAGGGTAGTAAGAAGAGGAAAGGTGGTGGTTATAAGATGAGGAAAGCGACTCGGCCTAGGTTTGCATTTCAGACTCGGAGCGCTGATGATATTCTTGATGATGGCTACCGTTGGAGAAAATATGGACAGAAAGCCGTCAAGAACAGCTTATATCCCAGGAGTTACTATCGCTGCACGCATCACACATGTAATGTGAAAAAGCAGATTCAGAGGCTATCAAAAGACACAAGCATCGTGGTGACAACATATGAAGGAACTCACAATCATCCCTGTGAGAAACTGATGGAAACCCTAACTCCTCTCTTGAGGCAAATGCAATTCCTCTCTAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

226

Amino Acids

25.44

Weight (kDa)

9.22

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	148 - 205	1.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64000 AT2G46130 AT2G46130 AT5G41570
fragaria_vesca	FvH4_7g15430
malus_domestica	MD01G1071600.v1.1 MD01G1123900.v1.1 MD07G1131000.v1.1
prunus_persica	Prupe.2G177800_v2.0.a1 Prupe.2G231300_v2.0.a1
pyrus_communis	pycom01g10080 pycom01g15040 pycom07g12810
rosa_chinensis	RchiOBHm_Chr1g0357751
rosa_laevigata	RLG00000028000
rosa_multiflora	Rmu_ssc0000399.1_g000021
rosa_roxburghii	Rroxscaffold_4G00298540
rosa_rugosa	Rorug01G0258300
rosa_samantha	Rh1AG272200 Rh1BG239400 Rh1CG256100 Rh1DG267700
rosa_wichuraiana	Rw1G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	206
AciI	CCGC	5 cut(s)	53, 56, 80, 83, 303
AclWI	GGATC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	289
AfeI	AGCGCT	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	124, 323
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	103, 492
AluI	AGCT	2 cut(s)	103, 492
AlwI	GGATC	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	516
AseI	ATTAAT	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	320, 338, 595
AvrII	CCTAGG	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	440, 622
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	2 cut(s)	157, 241
BfaI	CTAG	5 cut(s)	179, 230, 402, 672, 679
BfmI	CTRYAG	2 cut(s)	146, 256
BfoI	RGCGCY	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	4 cut(s)	56, 80, 83, 517
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	4 cut(s)	57, 81, 84, 518
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	532, 585
BpuEI	CTTGAG	1 cut(s)	670
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	401, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bse1I	ACTGG	2 cut(s)	194, 274
Bse21I	CCTNAGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	401, 500
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	194, 274
BseRI	GAGGAG	3 cut(s)	120, 123, 633
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	502
BshFI	GGCC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	157, 192, 241, 334
BspACI	CCGC	5 cut(s)	53, 56, 80, 83, 303
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	128
BspHI	TCATGA	2 cut(s)	154, 238
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	194, 274
BssECI	CCNNGG	2 cut(s)	401, 500
BssMI	GATC	4 cut(s)	157, 192, 241, 334
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	69, 455
Bst6I	CTCTTC	4 cut(s)	110, 141, 147, 353
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	160, 195, 244, 337
BstMBI	GATC	4 cut(s)	157, 192, 241, 334
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	146, 256
BstV1I	GCAGC	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	610
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	521
CciI	TCATGA	2 cut(s)	154, 238
CfoI	GCGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	288
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	4 cut(s)	155, 224, 239, 531
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	4 cut(s)	159, 194, 243, 336
DpnII	GATC	4 cut(s)	157, 192, 241, 334
Eam1104I	CTCTTC	4 cut(s)	110, 141, 147, 353
EarI	CTCTTC	4 cut(s)	110, 141, 147, 353
Eco130I	CCWWGG	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	4 cut(s)	158, 227, 242, 534
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	4 cut(s)	154, 223, 238, 530
FauNDI	CATATG	2 cut(s)	21, 592
FbaI	TGATCA	2 cut(s)	157, 241
Fnu4HI	GCNGC	4 cut(s)	56, 80, 83, 517
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	4 cut(s)	56, 80, 83, 517
FspBI	CTAG	5 cut(s)	179, 230, 402, 672, 679
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	4 cut(s)	56, 80, 83, 517
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	158, 227, 242, 534
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	4 cut(s)	25, 394, 418, 550
HphI	GGTGA	3 cut(s)	320, 338, 595
Hpy188I	TCNGA	4 cut(s)	246, 417, 423, 555
Hpy188III	TCNNGA	9 cut(s)	14, 117, 155, 179, 239, 338, 440, 484, 649
HpyAV	CCTTC	3 cut(s)	209, 317, 590
HpyCH4III	ACNGT	2 cut(s)	69, 455
HpyCH4V	TGCA	3 cut(s)	410, 519, 661
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	158, 227, 242, 534
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	2 cut(s)	157, 241
Kzo9I	GATC	4 cut(s)	157, 192, 241, 334
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	305, 423
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	2 cut(s)	532, 585
MaeI	CTAG	5 cut(s)	179, 230, 402, 672, 679
MaeIII	GTNAC	3 cut(s)	265, 506, 583
MalI	GATC	4 cut(s)	159, 194, 243, 336
MboI	GATC	4 cut(s)	157, 192, 241, 334
MboII	GAAGA	4 cut(s)	97, 128, 134, 370
MluCI	AATT	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	388, 412
MmeI	TCCRAC	2 cut(s)	59, 437
MseI	TTAA	3 cut(s)	71, 171, 249
MslI	CAYNNNNRTG	2 cut(s)	581, 615
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
NdeI	CATATG	2 cut(s)	21, 592
NdeII	GATC	4 cut(s)	157, 192, 241, 334
NlaIII	CATG	4 cut(s)	158, 227, 242, 534
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	265, 583
NspI	RCATGY	1 cut(s)	534
PagI	TCATGA	2 cut(s)	154, 238
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	25, 550
PkrI	GCNGC	4 cut(s)	57, 81, 84, 518
PleI	GAGTC	2 cut(s)	388, 412
PpsI	GAGTC	2 cut(s)	388, 412
PscI	ACATGT	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	581, 615
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	71, 171, 249
SatI	GCNGC	4 cut(s)	56, 80, 83, 517
Sau3AI	GATC	4 cut(s)	157, 192, 241, 334
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	2 cut(s)	388, 412
ScrFI	CCNGG	1 cut(s)	502
SfaNI	GCATC	2 cut(s)	532, 585
SfcI	CTRYAG	2 cut(s)	146, 256
SmiMI	CAYNNNNRTG	2 cut(s)	581, 615
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	1 cut(s)	662
SsiI	CCGC	5 cut(s)	53, 56, 80, 83, 303
SspMI	CTAG	5 cut(s)	179, 230, 402, 672, 679
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	69, 455
TasI	AATT	1 cut(s)	662
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	3 cut(s)	58, 82, 85
TfiI	GAWTC	2 cut(s)	25, 550
Tru1I	TTAA	3 cut(s)	71, 171, 249
Tru9I	TTAA	3 cut(s)	71, 171, 249
TseFI	GTSAC	2 cut(s)	265, 583
TseI	GCWGC	1 cut(s)	516
Tsp45I	GTSAC	2 cut(s)	265, 583
TspDTI	ATGAA	2 cut(s)	38, 609
VspI	ATTAAT	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	534
XmaJI	CCTAGG	1 cut(s)	401
XspI	CTAG	5 cut(s)	179, 230, 402, 672, 679
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.