Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008521

Physical Location & Seq

Genomic Coordinates Reverse (-)

36773111 .. 36774683

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0258300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTTTGGTCTGTGCTCTAAAAGATTGCAATTGCTTCTTCCAAGTCGTGGCTTCTCTGTTAATTCAGTGACCCATTTGCATTTATGTCAAAACCCACGTTTCTATTCATCAAAATCATTACTGGGTTCTGAAAATGACAAACCAAAACAAGAACATAAAGGTGACTCTTTTACAGTTTCATACCTTATAAACTCATGTGGCATGTCCCCAGAAAACGCTCTCTATGTGTCAGAGAGGGTACACTTTGATACCCGAGAGCGACCCGACTCGGTTATTAAGCTTTTCAAAGACTATAGACTCAATGATGCCCAAATCATCTTGCTTGTTAAGAAACTGCCAAGGTTGCTCTTATACAATCCTGAAACCCTTTTGCCCAAACTTGAGTTTTTCGGTTCTCTAGGCTTTGCAGGCACCGACCTCGCCAATGCCCTCTTTCGCAATCCCATGATCTTGACGCGAAGCTTAGAGAAATGCATCCTTCCTTGTTTTGATCTGATCAAAAGTATAGTTGGTGAGGATAAAAGGGTTGCTACTTTCTTTAGGACCTCGAAATGGACAGTGTCGGCCAAGTCACTAAGATATGTTGTATCCAATGTTGCATTTTTGAGAGGGCTTGAAGTGCCGGATTCCACAATCTCTGTTTATCTGACCTGGCATCCTTTGATGCTGTGTCGTAAAACTGAGTGTTTCAAGGAAGATGTCAACAAGGTCATGAGTATGGGAATCGAACCTTCATCATCTGCGACATTCATGAAAGCACTAGTTGTGGCTTTTATGGTGGATGCATCAAAGTGGGAGCAAAAGATGCAATTTTATAAGGAATGGGGTTGGACTGAAGATGATTTTGCGTTGGCATTTAGAAAACATCCCTTATTTATGACCTTCTCTGAGAAGAATATTTCGAGCAAAATGGATTTTCTTCTGAACAAAATGGGTTGGCAGCCTGCAGATGTGGCTGGGGATCCATATGTTTTAACTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAACGAAGGGAGAGTGTTCTTTGCTTTCCATTCTGAAGAAAAGTGAGAAGTACTTGTTGAATAAGTTTGTGCTCAAATATCAAGAGCAAGTACCTGAACTATTGAGCATTTATCAAGGCAAAATGGGTCTTGCAGACCTCGGCTTAGGATTTGAATCATTTGTAGGAAGATATTATCATTTTGTTCGTAATTTGTTCATTAAGAGGATTATAAGAAGGACCTATCATTATAAGTTTTGCTACCACCTATGCACTTTTGTTATCTTTTACCATTTTCTTCCTTGCGAAGAACTGTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

448

Amino Acids

51.86

Weight (kDa)

9.24

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	93 - 223	3.2e-10	mTERF
mTERF	PF02536	196 - 365	7.5e-21	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64000 AT2G46130 AT2G46130 AT5G41570
fragaria_vesca	FvH4_7g15430
malus_domestica	MD01G1071600.v1.1 MD01G1123900.v1.1 MD07G1131000.v1.1
prunus_persica	Prupe.2G177800_v2.0.a1 Prupe.2G231300_v2.0.a1
pyrus_communis	pycom01g10080 pycom01g15040 pycom07g12810
rosa_chinensis	RchiOBHm_Chr1g0357751
rosa_laevigata	RLG00000028000
rosa_multiflora	Rmu_ssc0000399.1_g000021
rosa_roxburghii	Rroxscaffold_4G00298540
rosa_rugosa	Rorug01G0258300
rosa_samantha	Rh1AG272200 Rh1BG239400 Rh1CG256100 Rh1DG267700
rosa_wichuraiana	Rw1G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	188, 816, 1256, 1275
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccII	CGCG	1 cut(s)	457
AciI	CCGC	1 cut(s)	994
AclWI	GGATC	3 cut(s)	956, 969, 1004
AcoI	YGGCCR	1 cut(s)	564
AcuI	CTGAAG	2 cut(s)	855, 1100
AfaI	GTAC	3 cut(s)	240, 1097, 1137
AfiI	CCNNNNNNNGG	3 cut(s)	47, 552, 1036
AflIII	ACRYGT	1 cut(s)	1007
AgsI	TTSAA	6 cut(s)	286, 617, 691, 1036, 1105, 1199
AhlI	ACTAGT	1 cut(s)	760
AjnI	CCWGG	1 cut(s)	650
AluBI	AGCT	2 cut(s)	280, 462
AluI	AGCT	2 cut(s)	280, 462
Alw21I	GWGCWC	2 cut(s)	17, 1119
AlwI	GGATC	3 cut(s)	956, 969, 1004
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	940
AspS9I	GGNCC	2 cut(s)	543, 1263
AsuHPI	GGTGA	2 cut(s)	173, 524
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	543, 1263
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	410
Bbv12I	GWGCWC	2 cut(s)	17, 1119
BbvI	GCAGC	1 cut(s)	952
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	495
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	2 cut(s)	398, 761
BfmI	CTRYAG	2 cut(s)	292, 945
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	1 cut(s)	941
BlsI	GCNGC	1 cut(s)	942
BmcAI	AGTACT	1 cut(s)	1097
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	2 cut(s)	543, 1263
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	543, 1263
BmiI	GGNNCC	2 cut(s)	412, 963
BmrFI	CCNGG	1 cut(s)	652
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	7 cut(s)	295, 483, 654, 664, 772, 794, 795
BmuI	ACTGGG	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	1189
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	1198
BsaJI	CCNNGG	2 cut(s)	338, 1183
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 552, 1036
Bse1I	ACTGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	1198
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	338, 1183
BseGI	GGATG	4 cut(s)	474, 655, 787, 865
BseJI	GATNNNNATC	1 cut(s)	1198
BseLI	CCNNNNNNNGG	3 cut(s)	47, 552, 1036
BseMII	CTCAG	2 cut(s)	672, 879
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	952
BseYI	CCCAGC	1 cut(s)	956
Bsh1236I	CGCG	1 cut(s)	457
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	2 cut(s)	17, 1119
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	3 cut(s)	47, 552, 1036
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	17, 1119
Bsp143I	GATC	5 cut(s)	447, 490, 495, 961, 996
BspACI	CCGC	1 cut(s)	994
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	673, 880
BspFNI	CGCG	1 cut(s)	457
BspHI	TCATGA	2 cut(s)	711, 750
BspLI	GGNNCC	2 cut(s)	412, 963
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	3 cut(s)	956, 969, 1004
BspT107I	GGYRCC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	338, 1183
BssMI	GATC	5 cut(s)	447, 490, 495, 961, 996
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	175, 559, 1338
BstAPI	GCANNNNNTGC	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	409, 945
BstDEI	CTNAG	5 cut(s)	463, 575, 681, 888, 1189
BstENI	CCTNNNNNAGG	1 cut(s)	1034
BstF5I	GGATG	4 cut(s)	474, 655, 787, 865
BstFNI	CGCG	1 cut(s)	457
BstKTI	GATC	5 cut(s)	450, 493, 498, 964, 999
BstMBI	GATC	5 cut(s)	447, 490, 495, 961, 996
BstMWI	GCNNNNNNNGC	5 cut(s)	343, 408, 619, 805, 953
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	2 cut(s)	205, 1011
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	2 cut(s)	292, 945
BstUI	CGCG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	952
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	474, 655, 787, 865
BtsIMutI	CAGTG	2 cut(s)	72, 564
Cac8I	GCNNGC	2 cut(s)	409, 945
CciI	TCATGA	2 cut(s)	711, 750
Cfr13I	GGNCC	2 cut(s)	543, 1263
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	3 cut(s)	239, 1096, 1136
CviAII	CATG	6 cut(s)	195, 202, 445, 712, 751, 1008
CviQI	GTAC	3 cut(s)	239, 1096, 1136
DdeI	CTNAG	5 cut(s)	463, 575, 681, 888, 1189
DpnI	GATC	5 cut(s)	449, 492, 497, 963, 998
DpnII	GATC	5 cut(s)	447, 490, 495, 961, 996
EaeI	YGGCCR	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	543, 1263
Eco57I	CTGAAG	2 cut(s)	855, 1100
Eco88I	CYCGRG	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	1034
EcoO109I	RGGNCCY	2 cut(s)	543, 1263
EcoRII	CCWGG	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	338
EcoT22I	ATGCAT	2 cut(s)	476, 787
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	6 cut(s)	198, 205, 448, 715, 754, 1011
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	6 cut(s)	194, 201, 444, 711, 750, 1007
FauNDI	CATATG	1 cut(s)	967
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	941
FokI	GGATG	4 cut(s)	461, 642, 794, 852
Fsp4HI	GCNGC	1 cut(s)	941
FspBI	CTAG	2 cut(s)	398, 761
GluI	GCNGC	1 cut(s)	941
GsaI	CCCAGC	1 cut(s)	960
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	623
HgaI	GACGC	1 cut(s)	463
Hin1II	CATG	6 cut(s)	198, 205, 448, 715, 754, 1011
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	2 cut(s)	278, 460
HinfI	GANTC	6 cut(s)	164, 266, 297, 626, 723, 1199
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	2 cut(s)	173, 524
Hpy166II	GTNNAC	2 cut(s)	241, 703
Hpy188I	TCNGA	7 cut(s)	130, 232, 495, 648, 889, 924, 1080
Hpy188III	TCNNGA	5 cut(s)	359, 451, 712, 751, 1127
Hpy8I	GTNNAC	2 cut(s)	241, 703
HpyAV	CCTTC	6 cut(s)	488, 741, 892, 1030, 1045, 1254
HpyCH4III	ACNGT	3 cut(s)	175, 559, 1338
HpyCH4IV	ACGT	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	5 cut(s)	343, 408, 619, 805, 953
HpyF3I	CTNAG	5 cut(s)	463, 575, 681, 888, 1189
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	6 cut(s)	198, 205, 448, 715, 754, 1011
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	447, 490, 495, 961, 996
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	1 cut(s)	952
LweI	GCATC	7 cut(s)	295, 483, 654, 664, 772, 794, 795
MaeI	CTAG	2 cut(s)	398, 761
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	3 cut(s)	67, 161, 570
MalI	GATC	5 cut(s)	449, 492, 497, 963, 998
MboI	GATC	5 cut(s)	447, 490, 495, 961, 996
MboII	GAAGA	9 cut(s)	29, 707, 848, 904, 911, 1093, 1224, 1313, 1343
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	2 cut(s)	17, 1119
MluCI	AATT	4 cut(s)	29, 61, 809, 1234
MlyI	GAGTC	3 cut(s)	158, 260, 291
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	8 cut(s)	228, 428, 440, 508, 556, 602, 1193, 1242
Mph1103I	ATGCAT	2 cut(s)	476, 787
MseI	TTAA	7 cut(s)	60, 276, 327, 974, 1043, 1245, 1345
MslI	CAYNNNNRTG	3 cut(s)	159, 716, 790
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	652
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	652
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	5 cut(s)	343, 408, 619, 805, 953
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	5 cut(s)	447, 490, 495, 961, 996
NlaIII	CATG	6 cut(s)	198, 205, 448, 715, 754, 1011
NlaIV	GGNNCC	2 cut(s)	412, 963
NmeAIII	GCCGAG	1 cut(s)	1164
NmuCI	GTSAC	3 cut(s)	67, 161, 570
NsiI	ATGCAT	2 cut(s)	476, 787
NspI	RCATGY	2 cut(s)	205, 1011
PagI	TCATGA	2 cut(s)	711, 750
PciI	ACATGT	1 cut(s)	1007
PfeI	GAWTC	3 cut(s)	626, 723, 1199
PflFI	GACNNNGTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	942
PleI	GAGTC	3 cut(s)	158, 260, 291
PpsI	GAGTC	3 cut(s)	158, 260, 291
PpuMI	RGGWCCY	2 cut(s)	543, 1263
PscI	ACATGT	1 cut(s)	1007
PsiI	TTATAA	4 cut(s)	188, 816, 1256, 1275
Psp5II	RGGWCCY	2 cut(s)	543, 1263
Psp6I	CCWGG	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	956
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	412, 963
PspPI	GGNCC	2 cut(s)	543, 1263
PspPPI	RGGWCCY	2 cut(s)	543, 1263
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	1 cut(s)	961
PsyI	GACNNNGTC	1 cut(s)	559
RsaI	GTAC	3 cut(s)	240, 1097, 1137
RsaNI	GTAC	3 cut(s)	239, 1096, 1136
RseI	CAYNNNNRTG	3 cut(s)	159, 716, 790
SaqAI	TTAA	7 cut(s)	60, 276, 327, 974, 1043, 1245, 1345
SatI	GCNGC	1 cut(s)	941
Sau3AI	GATC	5 cut(s)	447, 490, 495, 961, 996
Sau96I	GGNCC	2 cut(s)	543, 1263
ScaI	AGTACT	1 cut(s)	1097
SchI	GAGTC	3 cut(s)	158, 260, 291
ScrFI	CCNGG	1 cut(s)	652
SduI	GDGCHC	2 cut(s)	17, 1119
SfaNI	GCATC	7 cut(s)	295, 483, 654, 664, 772, 794, 795
SfcI	CTRYAG	2 cut(s)	292, 945
SinI	GGWCC	2 cut(s)	543, 1263
SmiMI	CAYNNNNRTG	3 cut(s)	159, 716, 790
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	4 cut(s)	29, 61, 809, 1234
SsiI	CCGC	1 cut(s)	994
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	2 cut(s)	398, 761
StyD4I	CCNGG	1 cut(s)	650
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	175, 559, 1338
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	548, 726, 902
TasI	AATT	4 cut(s)	29, 61, 809, 1234
TatI	WGTACW	1 cut(s)	1095
TfiI	GAWTC	3 cut(s)	626, 723, 1199
Tru1I	TTAA	7 cut(s)	60, 276, 327, 974, 1043, 1245, 1345
Tru9I	TTAA	7 cut(s)	60, 276, 327, 974, 1043, 1245, 1345
TscAI	CASTG	2 cut(s)	72, 564
TseFI	GTSAC	3 cut(s)	67, 161, 570
TseI	GCWGC	1 cut(s)	940
Tsp45I	GTSAC	3 cut(s)	67, 161, 570
TspDTI	ATGAA	6 cut(s)	96, 168, 723, 739, 767, 1231
TspRI	CASTG	2 cut(s)	72, 564
Tth111I	GACNNNGTC	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	543, 1263
XagI	CCTNNNNNAGG	1 cut(s)	1034
XceI	RCATGY	2 cut(s)	205, 1011
XspI	CTAG	2 cut(s)	398, 761
ZrmI	AGTACT	1 cut(s)	1097
Zsp2I	ATGCAT	2 cut(s)	476, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.