Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008521

Physical Location & Seq

Genomic Coordinates Reverse (-)

18748505 .. 18750267

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1131000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGGATCATCATCAACAGCATAATTCACCTCCATTAACCTCCCAATTGCCGCCCTTATCGTTACCATTCTTGTTGCCCCCGCCATCCCAAAACCCTCCTCTTCCTCCTCCCTATCTCTTCACATCCTCGTCATCCTCCTCATTGATGACCAACCCTCCTGATCTTCTAGACACTGACTGGTTCAGCCTTCTCTCTGGTGGTACTCAAGCGGCTGGCTGGCTTAGTCATGATCAGATTAATAATAGTTTTAAGCCTATGGCTATGGTGGATAAAAATATTAGTGGCTCTGCTGGGAATATTATTAGTGAAGCTGCGGATCAGGAAGAAAAGGTGGGTATTAAAAGGAAAGCTGGGGGTAGGATGAGAAAAGCAGCGGCAAGCCGACCTAGGTTTGCGTTCCAGACTCGGAGTACGGATGATATTCTTGATGATGGCTACCGCTGGAGAAAATATGGACAGAAAGCGGTCAAGAACAGCTCATATCCCAGGAGCTATTATCGCTGCACACATCACACATGCAATGTGAAAAAACAGGTCCAGAGGCTGTCTAAAGACACAAGCATCGTCGTGACAACGTATGAAGGAACTCACAATCATCCTTGCGAGAAACTCATGGAAACCCTAGCTCCTCTACTGAAGCAAATGCAGTTCCTCTCTAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

223

Amino Acids

24.93

Weight (kDa)

9.36

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	144 - 201	4.6e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64000 AT2G46130 AT2G46130 AT5G41570
fragaria_vesca	FvH4_7g15430
malus_domestica	MD01G1071600.v1.1 MD01G1123900.v1.1 MD07G1131000.v1.1
prunus_persica	Prupe.2G177800_v2.0.a1 Prupe.2G231300_v2.0.a1
pyrus_communis	pycom01g10080 pycom01g15040 pycom07g12810
rosa_chinensis	RchiOBHm_Chr1g0357751
rosa_laevigata	RLG00000028000
rosa_multiflora	Rmu_ssc0000399.1_g000021
rosa_roxburghii	Rroxscaffold_4G00298540
rosa_rugosa	Rorug01G0258300
rosa_samantha	Rh1AG272200 Rh1BG239400 Rh1CG256100 Rh1DG267700
rosa_wichuraiana	Rw1G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	53, 83, 212, 317, 377, 442, 467
AclWI	GGATC	2 cut(s)	15, 327
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	205, 415
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	5 cut(s)	314, 353, 480, 495, 629
AluI	AGCT	5 cut(s)	314, 353, 480, 495, 629
AlwI	GGATC	2 cut(s)	15, 327
AlwNI	CAGNNNCTG	1 cut(s)	547
ApeKI	GCWGC	3 cut(s)	314, 374, 504
AseI	ATTAAT	1 cut(s)	240
AspA2I	CCTAGG	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	538
AvrII	CCTAGG	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	301, 386, 491
BccI	CCATC	2 cut(s)	94, 428
BciT130I	CCWGG	1 cut(s)	490
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	4 cut(s)	170, 390, 626, 660
BisI	GCNGC	6 cut(s)	53, 213, 315, 375, 378, 505
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	6 cut(s)	54, 214, 316, 376, 379, 506
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	389, 488
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 613, 643
Bse1I	ACTGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	389, 488
BseGI	GGATG	6 cut(s)	86, 125, 134, 369, 424, 598
BseJI	GATNNNNATC	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	529
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	4 cut(s)	90, 99, 130, 621
BseXI	GCAGC	3 cut(s)	301, 386, 491
BseYI	CCCAGC	2 cut(s)	293, 353
BsgI	GTGCAG	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	7, 163, 232, 319
BspACI	CCGC	7 cut(s)	53, 83, 212, 317, 377, 442, 467
BspHI	TCATGA	1 cut(s)	229
BspPI	GGATC	2 cut(s)	15, 327
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	389, 488
BssMI	GATC	4 cut(s)	7, 163, 232, 319
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	490
Bst6I	CTCTTC	2 cut(s)	108, 125
BstC8I	GCNNGC	3 cut(s)	217, 221, 382
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	6 cut(s)	86, 125, 134, 369, 424, 598
BstKTI	GATC	4 cut(s)	10, 166, 235, 322
BstMBI	GATC	4 cut(s)	7, 163, 232, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	488
BstV1I	GCAGC	3 cut(s)	301, 386, 491
BtsCI	GGATG	6 cut(s)	86, 125, 134, 369, 424, 598
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	3 cut(s)	217, 221, 382
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	204, 414
CviAII	CATG	3 cut(s)	230, 519, 616
CviQI	GTAC	2 cut(s)	204, 414
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	4 cut(s)	9, 165, 234, 321
DpnII	GATC	4 cut(s)	7, 163, 232, 319
Eam1104I	CTCTTC	2 cut(s)	108, 125
EarI	CTCTTC	2 cut(s)	108, 125
Eco130I	CCWWGG	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	233, 522, 619
FaiI	YATR	9 cut(s)	24, 231, 260, 266, 456, 484, 520, 582, 617
FatI	CATG	3 cut(s)	229, 518, 615
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	53, 213, 315, 375, 378, 505
FokI	GGATG	6 cut(s)	73, 112, 121, 376, 431, 585
Fsp4HI	GCNGC	6 cut(s)	53, 213, 315, 375, 378, 505
FspBI	CTAG	4 cut(s)	170, 390, 626, 660
GluI	GCNGC	6 cut(s)	53, 213, 315, 375, 378, 505
GsaI	CCCAGC	2 cut(s)	297, 357
GsuI	CTGGAG	1 cut(s)	466
Hin1II	CATG	3 cut(s)	233, 522, 619
HinfI	GANTC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	237, 411
Hpy188III	TCNNGA	9 cut(s)	161, 170, 230, 323, 403, 428, 472, 541, 571
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	2 cut(s)	200, 578
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	3 cut(s)	507, 522, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	3 cut(s)	233, 522, 619
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	7, 163, 232, 319
LmnI	GCTCC	2 cut(s)	492, 634
Lsp1109I	GCAGC	3 cut(s)	301, 386, 491
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	4 cut(s)	170, 390, 626, 660
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	63, 571
MalI	GATC	4 cut(s)	9, 165, 234, 321
MboI	GATC	4 cut(s)	7, 163, 232, 319
MboII	GAAGA	4 cut(s)	95, 112, 158, 338
MfeI	CAATTG	1 cut(s)	47
MluCI	AATT	2 cut(s)	25, 47
MlyI	GAGTC	1 cut(s)	400
MseI	TTAA	5 cut(s)	38, 240, 252, 342, 667
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	2 cut(s)	377, 444
MspR9I	CCNGG	1 cut(s)	490
MunI	CAATTG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	501
NdeII	GATC	4 cut(s)	7, 163, 232, 319
NlaIII	CATG	3 cut(s)	233, 522, 619
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	522
PagI	TCATGA	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	54, 214, 316, 376, 379, 506
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	488
PspFI	CCCAGC	2 cut(s)	293, 353
PspGI	CCWGG	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	205, 415
RsaNI	GTAC	2 cut(s)	204, 414
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	5 cut(s)	38, 240, 252, 342, 667
SatI	GCNGC	6 cut(s)	53, 213, 315, 375, 378, 505
Sau3AI	GATC	4 cut(s)	7, 163, 232, 319
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	573
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	25, 47
SsiI	CCGC	7 cut(s)	53, 83, 212, 317, 377, 442, 467
SspI	AATATT	2 cut(s)	280, 301
SspMI	CTAG	4 cut(s)	170, 390, 626, 660
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	389
TaiI	ACGT	1 cut(s)	581
TasI	AATT	2 cut(s)	25, 47
TauI	GCSGC	3 cut(s)	55, 215, 380
Tru1I	TTAA	5 cut(s)	38, 240, 252, 342, 667
Tru9I	TTAA	5 cut(s)	38, 240, 252, 342, 667
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	3 cut(s)	314, 374, 504
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	1 cut(s)	597
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	538
VspI	ATTAAT	1 cut(s)	240
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	522
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	4 cut(s)	170, 390, 626, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.