Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000399.1

Orthogroup ID

OG0008521

Physical Location & Seq

Genomic Coordinates Reverse (-)

71461 .. 71967

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000399.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggaaggaggtcaagaacatatgaatccacctccaacctcatcaacaacactgccgctatcattaccgttaatcttgccgccgcaaaacccttcctaccagctcttcacaccctcaggattgaaccctcctcctcttcctcttctacagcctcatgatcatcaatcccttaaccctctagacattgactggatcagccttctctctggtcaagcaggtcatcatgggctagtcagtcatgatcagattagtaactatagggctgtgacgggtatggtggatctcagtacagcctctggctccgctggtgagaatactattgaaggtgatgatgatccggaacaaaagggttgtaagaagaggaaagttggtggttataagatgaggaaagcgactcggcctaggtttgcatttcagactcggagcgctgatgatattcttgatgatggctaccgttggagaaaatatggacagaaagccgtcaagaacagcttatatcccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

7.89

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64000 AT2G46130 AT2G46130 AT5G41570
fragaria_vesca	FvH4_7g15430
malus_domestica	MD01G1071600.v1.1 MD01G1123900.v1.1 MD07G1131000.v1.1
prunus_persica	Prupe.2G177800_v2.0.a1 Prupe.2G231300_v2.0.a1
pyrus_communis	pycom01g10080 pycom01g15040 pycom07g12810
rosa_chinensis	RchiOBHm_Chr1g0357751
rosa_laevigata	RLG00000028000
rosa_multiflora	Rmu_ssc0000399.1_g000021
rosa_roxburghii	Rroxscaffold_4G00298540
rosa_rugosa	Rorug01G0258300
rosa_samantha	Rh1AG272200 Rh1BG239400 Rh1CG256100 Rh1DG267700
rosa_wichuraiana	Rw1G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	337
AciI	CCGC	4 cut(s)	56, 80, 83, 303
AclWI	GGATC	3 cut(s)	200, 288, 329
AfaI	GTAC	1 cut(s)	289
AfeI	AGCGCT	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	124, 323
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	103, 492
AluI	AGCT	2 cut(s)	103, 492
AlwI	GGATC	3 cut(s)	200, 288, 329
AlwNI	CAGNNNCTG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	337
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	398
AspA2I	CCTAGG	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	320, 338
AvrII	CCTAGG	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	115
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	2 cut(s)	157, 241
BfaI	CTAG	3 cut(s)	179, 230, 402
BfmI	CTRYAG	2 cut(s)	146, 256
BfoI	RGCGCY	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	56, 80, 83
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	3 cut(s)	57, 81, 84
Bme1390I	CCNGG	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	502
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	401, 500
BsaWI	WCCGGW	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	401, 500
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	129, 298
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	2 cut(s)	120, 123
BshFI	GGCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	338
BsnI	GGCC	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	337
Bsp143I	GATC	5 cut(s)	157, 192, 241, 280, 334
BspACI	CCGC	4 cut(s)	56, 80, 83, 303
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	128, 297
BspEI	TCCGGA	1 cut(s)	337
BspHI	TCATGA	2 cut(s)	154, 238
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	3 cut(s)	200, 288, 329
BspQI	GCTCTTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	401, 500
BssMI	GATC	5 cut(s)	157, 192, 241, 280, 334
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	69, 455
Bst6I	CTCTTC	4 cut(s)	110, 141, 147, 353
BstDEI	CTNAG	2 cut(s)	115, 284
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	5 cut(s)	160, 195, 244, 283, 337
BstMBI	GATC	5 cut(s)	157, 192, 241, 280, 334
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	146, 256
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	2 cut(s)	154, 238
CfoI	GCGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	155, 224, 239
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	115, 284
DpnI	GATC	5 cut(s)	159, 194, 243, 282, 336
DpnII	GATC	5 cut(s)	157, 192, 241, 280, 334
Eam1104I	CTCTTC	4 cut(s)	110, 141, 147, 353
EarI	CTCTTC	4 cut(s)	110, 141, 147, 353
Eco130I	CCWWGG	1 cut(s)	401
Eco47III	AGCGCT	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	3 cut(s)	158, 227, 242
FalI	AAGNNNNNCTT	1 cut(s)	476
FatI	CATG	3 cut(s)	154, 223, 238
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	2 cut(s)	157, 241
Fnu4HI	GCNGC	3 cut(s)	56, 80, 83
Fsp4HI	GCNGC	3 cut(s)	56, 80, 83
FspBI	CTAG	3 cut(s)	179, 230, 402
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	56, 80, 83
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	158, 227, 242
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	25, 394, 418
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	320, 338
Hpy188I	TCNGA	3 cut(s)	246, 417, 423
Hpy188III	TCNNGA	8 cut(s)	14, 117, 155, 179, 239, 338, 440, 484
HpyAV	CCTTC	3 cut(s)	102, 209, 317
HpyCH4III	ACNGT	2 cut(s)	69, 455
HpyCH4V	TGCA	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	115, 284
Hsp92II	CATG	3 cut(s)	158, 227, 242
HspAI	GCGC	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	337
Ksp22I	TGATCA	2 cut(s)	157, 241
Kzo9I	GATC	5 cut(s)	157, 192, 241, 280, 334
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	305, 423
LpnPI	CCDG	9 cut(s)	102, 113, 175, 192, 201, 282, 291, 351, 487
MaeI	CTAG	3 cut(s)	179, 230, 402
MaeIII	GTNAC	2 cut(s)	251, 265
MalI	GATC	5 cut(s)	159, 194, 243, 282, 336
MboI	GATC	5 cut(s)	157, 192, 241, 280, 334
MboII	GAAGA	4 cut(s)	97, 128, 134, 370
MflI	RGATCY	1 cut(s)	280
MlyI	GAGTC	2 cut(s)	388, 412
MmeI	TCCRAC	2 cut(s)	59, 437
MroI	TCCGGA	1 cut(s)	337
MseI	TTAA	2 cut(s)	71, 171
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	5 cut(s)	157, 192, 241, 280, 334
NlaIII	CATG	3 cut(s)	158, 227, 242
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	265
PagI	TCATGA	2 cut(s)	154, 238
PciSI	GCTCTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	57, 81, 84
PleI	GAGTC	2 cut(s)	388, 412
PpsI	GAGTC	2 cut(s)	388, 412
PsiI	TTATAA	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	71, 171
SatI	GCNGC	3 cut(s)	56, 80, 83
Sau3AI	GATC	5 cut(s)	157, 192, 241, 280, 334
SchI	GAGTC	2 cut(s)	388, 412
ScrFI	CCNGG	1 cut(s)	502
SetI	ASST	9 cut(s)	13, 34, 41, 105, 220, 328, 407, 494, 506
SfcI	CTRYAG	2 cut(s)	146, 256
SsiI	CCGC	4 cut(s)	56, 80, 83, 303
SspMI	CTAG	3 cut(s)	179, 230, 402
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	69, 455
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	3 cut(s)	58, 82, 85
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	71, 171
Tru9I	TTAA	2 cut(s)	71, 171
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	57
XbaI	TCTAGA	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	401
XspI	CTAG	3 cut(s)	179, 230, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.