AT5G41570
WRKY Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008521
Physical Location & Seq
Forward (+)
16624157 .. 16625977
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41570.1

Sequence Viewer

Length: 540 bp
ATGGACAGAGAAGACATAAATCCTATGTTAAGCCGCCTAGATGTCGAAAACAACAACACCTTCTCTTCCTTTGTAGACAAAACCCTAATGATGATGCCTCCATCAACATTTTCCGGTGAAGTGGAACCTTCATCTTCTTCTTCTTGGTATCCAGAAAGCTTTCATGTGCATGCGCCGCCATTACCACCTGAGAATGATCAAATAGGTGAGAAAGGGAAGGAGCTGAAAGAGAAGAGATCGAGGAAAGTTCCAAGGATTGCGTTTCATACGAGGAGCGATGATGATGTTCTTGATGATGGTTATCGTTGGCGAAAATATGGGCAGAAATCTGTCAAGCACAATGCTCATCCCAGGAGCTATTACAGATGTACGTACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTCGTAACGACCTACGAAGGCGTTCATAACCATCCTTGTGAGAAGCTCATGGAGACTCTTAATCCTCTTCTCAGGCAACTCCAGTTCCTCTCCAGTTTCTCTAATCTTTGA

Protein Analysis

179

Amino Acids

20.81

Weight (kDa)

8.39

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 98 - 155 4.5e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AciI CCGC 2 cut(s) 34, 176
AclWI GGATC 1 cut(s) 413
AfaI GTAC 2 cut(s) 370, 374
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 4 cut(s) 159, 223, 357, 475
AluI AGCT 4 cut(s) 159, 223, 357, 475
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 413
Asp700I GAANNNNTTC 2 cut(s) 159, 450
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 128, 218
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 3 cut(s) 109, 290, 468
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 159
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 38
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 2 cut(s) 34, 176
BlsI GCNGC 2 cut(s) 35, 177
Bme1390I CCNGG 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 494, 505
BsaAI YACGTR 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 251, 350
BsaWI WCCGGW 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 511, 522
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 251, 350
BseGI GGATG 2 cut(s) 346, 460
BseJI GATNNNNATC 1 cut(s) 300
BseMII CTCAG 2 cut(s) 180, 514
BseNI ACTGG 2 cut(s) 511, 522
BseRI GAGGAG 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 476
Bsp143I GATC 3 cut(s) 196, 236, 418
BspACI CCGC 2 cut(s) 34, 176
BspCNI CTCAG 2 cut(s) 181, 513
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 413
BsrI ACTGG 2 cut(s) 511, 522
BssECI CCNNGG 2 cut(s) 251, 350
BssMI GATC 3 cut(s) 196, 236, 418
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 352
Bst6I CTCTTC 3 cut(s) 70, 227, 501
BstBAI YACGTR 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 189, 500
BstF5I GGATG 2 cut(s) 346, 460
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 199, 239, 421
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 196, 236, 418
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 173, 384
BstSCI CCNGG 1 cut(s) 350
BstSNI TACGTA 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuI GTATCC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 346, 460
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 369, 373
CviAII CATG 4 cut(s) 164, 170, 381, 478
CviJI RGCY 5 cut(s) 33, 159, 223, 357, 475
CviKI_1 RGCY 5 cut(s) 33, 159, 223, 357, 475
CviQI GTAC 2 cut(s) 369, 373
DdeI CTNAG 2 cut(s) 189, 500
DpnI GATC 3 cut(s) 198, 238, 420
DpnII GATC 3 cut(s) 196, 236, 418
Eam1104I CTCTTC 3 cut(s) 70, 227, 501
EarI CTCTTC 3 cut(s) 70, 227, 501
Eco105I TACGTA 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 4 cut(s) 167, 173, 384, 481
FaiI YATR 9 cut(s) 17, 26, 165, 171, 267, 318, 382, 456, 479
FatI CATG 4 cut(s) 163, 169, 380, 477
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 34, 176
FokI GGATG 2 cut(s) 333, 447
Fsp4HI GCNGC 2 cut(s) 34, 176
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 174
GluI GCNGC 2 cut(s) 34, 176
GsuI CTGGAG 2 cut(s) 494, 505
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 175
Hin1II CATG 4 cut(s) 167, 173, 384, 481
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 484
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 128, 218
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 152, 290
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 431, 434
HpyAV CCTTC 4 cut(s) 70, 138, 211, 440
HpyCH4IV ACGT 3 cut(s) 371, 387, 426
HpyCH4V TGCA 3 cut(s) 169, 384, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 189, 500
HpySE526I ACGT 3 cut(s) 371, 387, 426
Hsp92II CATG 4 cut(s) 167, 173, 384, 481
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 196, 236, 418
LmnI GCTCC 3 cut(s) 220, 273, 354
LpnPI CCDG 8 cut(s) 127, 165, 201, 337, 364, 487, 524, 535
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 38
MaeII ACGT 3 cut(s) 371, 387, 426
MaeIII GTNAC 1 cut(s) 433
MalI GATC 3 cut(s) 198, 238, 420
MboI GATC 3 cut(s) 196, 236, 418
MboII GAAGA 8 cut(s) 23, 57, 126, 129, 132, 244, 403, 488
MflI RGATCY 1 cut(s) 418
MlyI GAGTC 1 cut(s) 478
MnlI CCTC 5 cut(s) 108, 234, 264, 504, 527
MroXI GAANNNNTTC 2 cut(s) 159, 450
MseI TTAA 2 cut(s) 29, 489
MslI CAYNNNNRTG 2 cut(s) 168, 465
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 3 cut(s) 196, 236, 418
NlaIII CATG 4 cut(s) 167, 173, 384, 481
NlaIV GGNNCC 1 cut(s) 126
NspI RCATGY 2 cut(s) 173, 384
PaeI GCATGC 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 159, 450
PkrI GCNGC 2 cut(s) 35, 177
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 370, 374
RsaNI GTAC 2 cut(s) 369, 373
RseI CAYNNNNRTG 2 cut(s) 168, 465
SaqAI TTAA 2 cut(s) 29, 489
SatI GCNGC 2 cut(s) 34, 176
Sau3AI GATC 3 cut(s) 196, 236, 418
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 352
SfaNI GCATC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 168, 465
SnaBI TACGTA 1 cut(s) 372
SphI GCATGC 1 cut(s) 173
SsiI CCGC 2 cut(s) 34, 176
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 251
TaiI ACGT 3 cut(s) 374, 390, 429
TaqI TCGA 2 cut(s) 45, 239
TauI GCSGC 2 cut(s) 36, 178
Tru1I TTAA 2 cut(s) 29, 489
Tru9I TTAA 2 cut(s) 29, 489
TspDTI ATGAA 4 cut(s) 120, 152, 254, 443
XceI RCATGY 2 cut(s) 173, 384
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 2 cut(s) 159, 450
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.