AT2G46220

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016087
Physical Location & Seq
Forward (+)
18979399 .. 18980940
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46220.1

Sequence Viewer

Length: 726 bp
ATGGCATTCCTTGTTCGTTCGCCGGAGATACCCACCGTCTCGGCGAGAATCTTCTCCGATGCGAATTCGAGTGTTATTAGTCATGTGTTTATGAGGAGGAAGGCTACGGTTTCGGCGATTGACGCCAGAGATTTGCCTGGTGTTAAGAATCCGAAATCGAGATTGTACTGGCAATTCTCAGCTCCGGTGAAAGAAGACTACAAGATTAGCAGAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGCAGAGTTACTACGTGAATATGGGTCACGCCGTTCGTAGTATCAGAGAAGAGTTTCCTTTGTTGTTCTACAAAGAGCTTAATTTTGACATTTACAGGGATGATATTGTTTTCAAAGACCCTATGAACACTTTCATGGGAATTGATAACTACAAATCCATATTTGGGGCCTTACGTTTCCATGGAAGGATCTTCTTCAGAGCACTATGTGTGGACATTGTTAGTGTTTGGCAACCCACAGAGAACACTCTGATGATACGATGGACTGTTCATGGAATTCCTCGTGGTCCGTGGGAGACTCGTGGTCGATTCGATGGTACTTCTGAGTATAAATTCGATAAGAATGGCAAGATTTATGAGCATAAAGTCGATAACATAGCCATTAATTCGCCTCCAAAGTTTCAAATGCTCACTGTTCAAGAGCTTGTTGAAGCCATTAGCTGCCCTTCGACTCCCAAGCCGACCTACTTTGAGTTCGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

241

Amino Acids

28.11

Weight (kDa)

6.02

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 90 - 201 8.8e-40 Uncharacterized conserved protein (DUF2358)
SnoaL_2 PF12680 110 - 201 4e-07 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46220
fragaria_vesca FvH4_7g15580
malus_domestica MD01G1073100.v1.1
prunus_persica Prupe.2G179500_v2.0.a1
pyrus_communis pycom01g10210
rosa_chinensis RchiOBHm_Chr1g0358261
rosa_laevigata RLG00000027979
rosa_multiflora Rmu_co8490635.1_g000001 Rmu_sc0002071.1_g000013
rosa_roxburghii Rroxscaffold_4G00298320
rosa_rugosa Rorug01G0259900
rosa_samantha Rh1BG241100 Rh1CG257600 Rh1DG269800
rosa_wichuraiana Rw1G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 3 cut(s) 64, 516, 572
AcuI CTGAAG 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 167, 559
AfiI CCNNNNNNNGG 1 cut(s) 405
AgsI TTSAA 4 cut(s) 355, 644, 659, 671
AhdI GACNNNNNGTC 1 cut(s) 543
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 4 cut(s) 182, 319, 664, 681
AluI AGCT 4 cut(s) 182, 319, 664, 681
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 43, 530
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 681
ApoI RAATTY 3 cut(s) 64, 516, 572
AseI ATTAAT 1 cut(s) 624
Asp700I GAANNNNTTC 2 cut(s) 294, 371
AspS9I GGNCC 2 cut(s) 408, 527
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 527
BauI CACGAG 2 cut(s) 522, 540
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 668
BccI CCATC 2 cut(s) 495, 548
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 43, 530
BisI GCNGC 1 cut(s) 682
BlsI GCNGC 1 cut(s) 683
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 527
BmeRI GACNNNNNGTC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 408, 527
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 421, 530
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 421, 530
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 192, 555
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 109, 230
BseXI GCAGC 1 cut(s) 668
BshFI GGCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 2 cut(s) 23, 185
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 43, 530
BsmBI CGTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 421
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 191, 556
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 421, 530
BssMI GATC 1 cut(s) 429
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 2 cut(s) 522, 540
BssT1I CCWWGG 1 cut(s) 421
Bst2BI CACGAG 2 cut(s) 522, 540
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 37, 109, 508, 655
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 178, 564
BstDSI CCRYGG 2 cut(s) 421, 530
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 2 cut(s) 43, 530
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 668
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 2 cut(s) 421, 530
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 651
Cfr13I GGNCC 2 cut(s) 408, 527
CseI GACGC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 166, 558
CviAII CATG 4 cut(s) 83, 376, 422, 512
CviJI RGCY 9 cut(s) 104, 182, 319, 410, 620, 664, 674, 681, 700
CviKI_1 RGCY 9 cut(s) 104, 182, 319, 410, 620, 664, 674, 681, 700
CviQI GTAC 2 cut(s) 166, 558
DdeI CTNAG 2 cut(s) 178, 564
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 449
DriI GACNNNNNGTC 1 cut(s) 543
Eam1104I CTCTTC 1 cut(s) 285
Eam1105I GACNNNNNGTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 408
EcoRI GAATTC 2 cut(s) 64, 516
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 4 cut(s) 86, 379, 425, 515
FatI CATG 4 cut(s) 82, 375, 421, 511
Fnu4HI GCNGC 1 cut(s) 682
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 682
GluI GCNGC 1 cut(s) 682
HaeIII GGCC 1 cut(s) 410
HapII CCGG 2 cut(s) 23, 185
HgaI GACGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 86, 379, 425, 515
HinfI GANTC 5 cut(s) 48, 148, 538, 549, 691
HpaII CCGG 2 cut(s) 23, 185
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 7 cut(s) 58, 153, 287, 440, 492, 565, 719
Hpy188III TCNNGA 2 cut(s) 159, 659
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 3 cut(s) 94, 420, 696
HpyCH4III ACNGT 4 cut(s) 37, 109, 508, 655
HpyCH4IV ACGT 2 cut(s) 255, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 178, 564
HpySE526I ACGT 2 cut(s) 255, 415
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 86, 379, 425, 515
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 36, 123, 139, 150, 154, 198, 322
Lsp1109I GCAGC 1 cut(s) 668
LweI GCATC 1 cut(s) 49
MaeII ACGT 2 cut(s) 255, 415
MaeIII GTNAC 2 cut(s) 248, 266
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 7 cut(s) 64, 173, 322, 381, 516, 572, 625
MlyI GAGTC 2 cut(s) 532, 685
MnlI CCTC 6 cut(s) 87, 90, 208, 211, 531, 642
MroXI GAANNNNTTC 2 cut(s) 294, 371
MseI TTAA 3 cut(s) 144, 321, 624
MslI CAYNNNNRTG 2 cut(s) 374, 491
MspI CCGG 2 cut(s) 23, 185
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 122
NcoI CCATGG 1 cut(s) 421
NdeII GATC 1 cut(s) 429
NlaIII CATG 4 cut(s) 86, 379, 425, 515
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 2 cut(s) 294, 371
PfeI GAWTC 3 cut(s) 48, 148, 549
PkrI GCNGC 1 cut(s) 683
PleI GAGTC 2 cut(s) 532, 685
PpsI GAGTC 2 cut(s) 532, 685
Ppu21I YACGTR 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 2 cut(s) 408, 527
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 2 cut(s) 167, 559
RsaNI GTAC 2 cut(s) 166, 558
RseI CAYNNNNRTG 2 cut(s) 374, 491
SaqAI TTAA 3 cut(s) 144, 321, 624
SatI GCNGC 1 cut(s) 682
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 2 cut(s) 408, 527
SchI GAGTC 2 cut(s) 532, 685
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 445
SetI ASST 7 cut(s) 184, 258, 321, 418, 666, 683, 707
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 2 cut(s) 374, 491
Sse9I AATT 7 cut(s) 64, 173, 322, 381, 516, 572, 625
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 4 cut(s) 37, 109, 508, 655
TaiI ACGT 2 cut(s) 258, 418
TaqI TCGA 7 cut(s) 68, 158, 547, 552, 576, 609, 689
TasI AATT 7 cut(s) 64, 173, 322, 381, 516, 572, 625
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 3 cut(s) 48, 148, 549
Tru1I TTAA 3 cut(s) 144, 321, 624
Tru9I TTAA 3 cut(s) 144, 321, 624
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 681
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 364, 380, 500
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 3 cut(s) 64, 516, 572
XmnI GAANNNNTTC 2 cut(s) 294, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.