FvH4_7g15580

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016087
Physical Location & Seq
Reverse (-)
13458751 .. 13460927
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15580.t1

Sequence Viewer

Length: 753 bp
ATGGCTCTTCTCGTTCCGTCACCGGAAATCTCCAGAGTCTTCTCTAACCCTAACCCTAACCCTAACCGTAACGGCTTCCGATTCCCGACGAACAATGACAAATTCGGGTCGAAATCCGTTAGGGTTTGCTCCGGGATTAAGGACAGTGCGGTGAGGACGTCGGAGTTGGACCGGAATTTAAGGCCGTACGGGCAGTTCTCGGCTCCGGTAAAGCAGGGTCCGAAGCCGAGCAAGGAAGATCAGGAGAAGCAGGAGTACTATGTGAATATGGGGTATGCGATTCGGACTCTCAGAGAGGAGCTTCCTGAGCTCTTCTTCAGAGAGCTCAGCCTCAACATTTACAGGGACGATATCACATTCAAAGATCCGATCAATACCTTTACGGGCATTGAGAATTACAAGTCTATATTTTCGGCACTACGTTTCCATGGCCAGATATTTTTCAAGGCCTTGTGGGTTGATGTCATTAGTGTATTGCAGCCACTGGACAATGTTGTAATGGTTCGCTGGACTATTCATGGCATGCCACGAGTTCCTTGGGAAAGTCGGGGTCGGTTTGATGGAACCTCTGAGTACAAACTTGACAAGAAAGGCAAGATCTATGAGCATCGTGTTGATAACATTGCTCTGAATTCGCCTCCGAAGTTTCAGATGCTGGGCGTAGGCGACATAATGCAATCTCTTGGGTGCCCCTCCACTCCGAAGCCGACTTTTTTTGAAACTTCATCATTGCCATCTTCAAAGAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

251

Amino Acids

28.64

Weight (kDa)

9.45

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 93 - 203 1.2e-38 Uncharacterized conserved protein (DUF2358)
SnoaL_2 PF12680 112 - 203 4.3e-06 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46220
fragaria_vesca FvH4_7g15580
malus_domestica MD01G1073100.v1.1
prunus_persica Prupe.2G179500_v2.0.a1
pyrus_communis pycom01g10210
rosa_chinensis RchiOBHm_Chr1g0358261
rosa_laevigata RLG00000027979
rosa_multiflora Rmu_co8490635.1_g000001 Rmu_sc0002071.1_g000013
rosa_roxburghii Rroxscaffold_4G00298320
rosa_rugosa Rorug01G0259900
rosa_samantha Rh1BG241100 Rh1CG257600 Rh1DG269800
rosa_wichuraiana Rw1G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 687
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 3 cut(s) 101, 175, 631
AcuI CTGAAG 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 3 cut(s) 188, 257, 575
AgsI TTSAA 4 cut(s) 361, 445, 719, 741
AluBI AGCT 3 cut(s) 301, 310, 325
AluI AGCT 3 cut(s) 301, 310, 325
Alw21I GWGCWC 2 cut(s) 312, 327
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 2 cut(s) 484, 655
AoxI GGCC 3 cut(s) 182, 430, 447
ApeKI GCWGC 1 cut(s) 478
ApoI RAATTY 3 cut(s) 101, 175, 631
AspS9I GGNCC 2 cut(s) 169, 218
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 12, 163
AvaII GGWCC 2 cut(s) 169, 218
BaeGI GKGCMC 1 cut(s) 692
BalI TGGCCA 1 cut(s) 432
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 2 cut(s) 312, 327
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 312, 327
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 554, 742
BceAI ACGGC 2 cut(s) 88, 169
BcnI CCSGG 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 190
BglII AGATCT 1 cut(s) 597
BisI GCNGC 1 cut(s) 479
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 480
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 169, 218
BmgT120I GGNCC 2 cut(s) 169, 218
BmiI GGNNCC 4 cut(s) 204, 219, 565, 689
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 616, 642
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 427, 536
BsaWI WCCGGW 3 cut(s) 22, 171, 205
Bse1I ACTGG 1 cut(s) 489
Bse3DI GCAATG 2 cut(s) 621, 728
BseDI CCNNGG 2 cut(s) 427, 536
BseMI GCAATG 2 cut(s) 621, 728
BseMII CTCAG 4 cut(s) 297, 304, 340, 561
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 1 cut(s) 490
BseYI CCCAGC 1 cut(s) 655
BshFI GGCC 3 cut(s) 184, 432, 449
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 2 cut(s) 312, 327
BsiSI CCGG 4 cut(s) 23, 132, 172, 206
BsiWI CGTACG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 3 cut(s) 184, 432, 449
Bsp1286I GDGCHC 3 cut(s) 312, 327, 692
Bsp143I GATC 4 cut(s) 238, 364, 369, 597
Bsp1720I GCTNAGC 1 cut(s) 326
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 1 cut(s) 149
BspANI GGCC 3 cut(s) 184, 432, 449
BspCNI CTCAG 4 cut(s) 298, 303, 339, 562
BspLI GGNNCC 4 cut(s) 204, 219, 565, 689
BspPI GGATC 1 cut(s) 359
BspQI GCTCTTC 2 cut(s) 12, 317
BspT107I GGYRCC 1 cut(s) 687
BsrDI GCAATG 2 cut(s) 621, 728
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 427, 536
BssMI GATC 4 cut(s) 238, 364, 369, 597
BssNI GRCGYC 1 cut(s) 158
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 2 cut(s) 427, 536
Bst2BI CACGAG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 68, 146
Bst6I CTCTTC 2 cut(s) 12, 317
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 4 cut(s) 290, 306, 326, 570
BstDSI CCRYGG 1 cut(s) 427
BstKTI GATC 4 cut(s) 241, 367, 372, 600
BstMBI GATC 4 cut(s) 238, 364, 369, 597
BstMWI GCNNNNNNNGC 2 cut(s) 190, 307
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 692
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 364, 597
BstYI RGATCY 2 cut(s) 364, 597
BsuRI GGCC 3 cut(s) 184, 432, 449
BtgI CCRYGG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 151, 482
Cac8I GCNNGC 1 cut(s) 524
CaiI CAGNNNCTG 2 cut(s) 484, 655
Cfr13I GGNCC 2 cut(s) 169, 218
Csp6I GTAC 3 cut(s) 187, 256, 574
CviAII CATG 3 cut(s) 428, 518, 523
CviQI GTAC 3 cut(s) 187, 256, 574
DdeI CTNAG 4 cut(s) 290, 306, 326, 570
DpnI GATC 4 cut(s) 240, 366, 371, 599
DpnII GATC 4 cut(s) 238, 364, 369, 597
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 12, 317
EarI CTCTTC 2 cut(s) 12, 317
Ecl136II GAGCTC 2 cut(s) 310, 325
Eco130I CCWWGG 2 cut(s) 427, 536
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 312, 327
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 169, 218
Eco53kI GAGCTC 2 cut(s) 310, 325
Eco57I CTGAAG 1 cut(s) 301
EcoICRI GAGCTC 2 cut(s) 310, 325
EcoRI GAATTC 1 cut(s) 631
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 427, 536
EcoT38I GRGCYC 2 cut(s) 312, 327
ErhI CCWWGG 2 cut(s) 427, 536
FaeI CATG 3 cut(s) 431, 521, 526
FaiI YATR 9 cut(s) 261, 269, 276, 407, 429, 519, 524, 603, 671
FaqI GGGAC 1 cut(s) 359
FatI CATG 3 cut(s) 427, 517, 522
Fnu4HI GCNGC 1 cut(s) 479
FriOI GRGCYC 2 cut(s) 312, 327
Fsp4HI GCNGC 1 cut(s) 479
GluI GCNGC 1 cut(s) 479
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 3 cut(s) 184, 432, 449
HapII CCGG 4 cut(s) 23, 132, 172, 206
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 3 cut(s) 431, 521, 526
HinfI GANTC 4 cut(s) 36, 81, 280, 286
HpaII CCGG 4 cut(s) 23, 132, 172, 206
HphI GGTGA 2 cut(s) 12, 163
Hpy188III TCNNGA 4 cut(s) 33, 85, 242, 305
Hpy99I CGWCG 2 cut(s) 91, 163
HpyCH4III ACNGT 2 cut(s) 68, 146
HpyCH4IV ACGT 2 cut(s) 158, 421
HpyCH4V TGCA 2 cut(s) 478, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 307
HpyF3I CTNAG 4 cut(s) 290, 306, 326, 570
HpySE526I ACGT 2 cut(s) 158, 421
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 431, 521, 526
Kzo9I GATC 4 cut(s) 238, 364, 369, 597
LguI GCTCTTC 2 cut(s) 12, 317
LmnI GCTCC 3 cut(s) 134, 208, 298
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 2 cut(s) 616, 642
MaeII ACGT 2 cut(s) 158, 421
MaeIII GTNAC 2 cut(s) 18, 68
MalI GATC 4 cut(s) 240, 366, 371, 599
MboI GATC 4 cut(s) 238, 364, 369, 597
MboII GAAGA 5 cut(s) 31, 248, 304, 307, 729
MflI RGATCY 2 cut(s) 364, 597
MhlI GDGCHC 3 cut(s) 312, 327, 692
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 4 cut(s) 101, 175, 394, 631
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 2 cut(s) 45, 280
MmeI TCCRAC 2 cut(s) 141, 147
MnlI CCTC 7 cut(s) 147, 289, 341, 577, 648, 703, 738
Mox20I TGGCCA 1 cut(s) 432
MscI TGGCCA 1 cut(s) 432
MseI TTAA 2 cut(s) 138, 179
Msp20I TGGCCA 1 cut(s) 432
MspI CCGG 4 cut(s) 23, 132, 172, 206
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 190, 307
NciI CCSGG 1 cut(s) 133
NcoI CCATGG 1 cut(s) 427
NdeII GATC 4 cut(s) 238, 364, 369, 597
NlaIII CATG 3 cut(s) 431, 521, 526
NlaIV GGNNCC 4 cut(s) 204, 219, 565, 689
NmeAIII GCCGAG 2 cut(s) 179, 252
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 526
PaeI GCATGC 1 cut(s) 526
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 2 cut(s) 12, 317
PfeI GAWTC 2 cut(s) 81, 280
Pfl23II CGTACG 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 1 cut(s) 480
PleI GAGTC 2 cut(s) 44, 280
PpsI GAGTC 2 cut(s) 44, 280
Psp124BI GAGCTC 2 cut(s) 312, 327
PspFI CCCAGC 1 cut(s) 655
PspLI CGTACG 1 cut(s) 186
PspN4I GGNNCC 4 cut(s) 204, 219, 565, 689
PspPI GGNCC 2 cut(s) 169, 218
PsrI GAACNNNNNNTAC 2 cut(s) 179, 211
PstNI CAGNNNCTG 2 cut(s) 484, 655
PsuI RGATCY 2 cut(s) 364, 597
RsaI GTAC 3 cut(s) 188, 257, 575
RsaNI GTAC 3 cut(s) 187, 256, 574
SacI GAGCTC 2 cut(s) 312, 327
SapI GCTCTTC 2 cut(s) 12, 317
SaqAI TTAA 2 cut(s) 138, 179
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 4 cut(s) 238, 364, 369, 597
Sau96I GGNCC 2 cut(s) 169, 218
ScaI AGTACT 1 cut(s) 257
SchI GAGTC 2 cut(s) 45, 280
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 3 cut(s) 312, 327, 692
SetI ASST 7 cut(s) 161, 303, 312, 327, 380, 424, 569
SfaNI GCATC 2 cut(s) 616, 642
SinI GGWCC 2 cut(s) 169, 218
SphI GCATGC 1 cut(s) 526
Sse9I AATT 4 cut(s) 101, 175, 394, 631
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 1 cut(s) 149
SstI GAGCTC 2 cut(s) 312, 327
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 2 cut(s) 427, 536
TaaI ACNGT 2 cut(s) 68, 146
TaiI ACGT 2 cut(s) 161, 424
TaqI TCGA 1 cut(s) 110
TasI AATT 4 cut(s) 101, 175, 394, 631
TatI WGTACW 2 cut(s) 255, 573
TfiI GAWTC 2 cut(s) 81, 280
Tru1I TTAA 2 cut(s) 138, 179
Tru9I TTAA 2 cut(s) 138, 179
TscAI CASTG 2 cut(s) 151, 489
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 506, 714
TspGWI ACGGA 2 cut(s) 6, 106
TspRI CASTG 2 cut(s) 151, 489
VpaK11BI GGWCC 2 cut(s) 169, 218
XapI RAATTY 3 cut(s) 101, 175, 631
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
ZraI GACGTC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.