Prupe.2G179500_v2.0.a1

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016087
Physical Location & Seq
Reverse (-)
22316690 .. 22318890
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G179500.1

Sequence Viewer

Length: 750 bp
ATGGTGATTCTCATTCCTTCACCAGAAATATCCAGAGTCCTTTGTCACCCTAACCCTAGCCTTAAAAGGTTTAAAATCTTGACGAACAATGAGAAATTTGGGGTTAAGTCTAAGGCGACGGTCAGGGTTTGCTCCAGGGTTAAAGATTGTACGGTGAAGATGACGGAATTGGATCAGAATGTGAGGTTGTATGGCCAGTTCTCAGCTCCAGTGAAGCGAGGTTCGAAGCCGAGCAAAGAAGAGGAAGAGAAGCAGAATTACTATGTGAATATGGGCTATGCGATTCGGACTGTGAGAGAGGAGTTTCCTGAGCTCTTTTACAGAGAGCCTAGCTTCGATATTTACAGGGACGATATCACATTTAAAGATCCAATCAATACGTTTATGGGCATTGAGAATTACAAGTCTATATTTTGGGCACTGCGTTTCCATGGAAAGATGTTTTTCAAGGCCTTGTGGGTTGATGTCATTAGTGTATGGCAGCCCATGGACAATGTAATAATGGTTCGCTGGACTGTCCATGGCATTCCACGAGGCCCTTGGGATAGTCGTGGTCGATTTGATGGAACCTCTGAATACAAACTTGACAAGAAAGGGAAGATCTTTGAGCATCGCGTTGATAACATTGCTCTCAATTCTCCTCCTAAGTTTCAAGTTCTGGCTGTAGCGGATATAATACAATCTCTTGGCTGCCCCTCAACCCCAAGGCCAACCTATTTTGAAACTTCATCCTCAAAGAGAACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

250

Amino Acids

29.05

Weight (kDa)

9.48

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46220
fragaria_vesca FvH4_7g15580
malus_domestica MD01G1073100.v1.1
prunus_persica Prupe.2G179500_v2.0.a1
pyrus_communis pycom01g10210
rosa_chinensis RchiOBHm_Chr1g0358261
rosa_laevigata RLG00000027979
rosa_multiflora Rmu_co8490635.1_g000001 Rmu_sc0002071.1_g000013
rosa_roxburghii Rroxscaffold_4G00298320
rosa_rugosa Rorug01G0259900
rosa_samantha Rh1BG241100 Rh1CG257600 Rh1DG269800
rosa_wichuraiana Rw1G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 615
AciI CCGC 1 cut(s) 668
AclWI GGATC 2 cut(s) 180, 362
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 3 cut(s) 448, 653, 722
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 206, 313, 333
AluI AGCT 3 cut(s) 206, 313, 333
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 2 cut(s) 180, 362
AoxI GGCC 4 cut(s) 193, 450, 535, 707
ApeKI GCWGC 2 cut(s) 481, 690
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 536
AsuHPI GGTGA 4 cut(s) 12, 16, 38, 166
AsuII TTCGAA 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 493, 677
BccI CCATC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 136
BfaI CTAG 2 cut(s) 57, 330
BfmI CTRYAG 1 cut(s) 663
BglII AGATCT 1 cut(s) 600
BisI GCNGC 2 cut(s) 482, 691
BlsI GCNGC 2 cut(s) 483, 692
Bme1390I CCNGG 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 619
BpmI CTGGAG 2 cut(s) 118, 192
Bpu10I CCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 224
BsaJI CCNNGG 6 cut(s) 135, 430, 486, 520, 539, 704
Bse1I ACTGG 2 cut(s) 196, 209
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 6 cut(s) 135, 430, 486, 520, 539, 704
BseGI GGATG 1 cut(s) 728
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 216, 300
BseNI ACTGG 2 cut(s) 196, 209
BseRI GAGGAG 2 cut(s) 314, 630
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 2 cut(s) 493, 677
Bsh1236I CGCG 1 cut(s) 615
BshFI GGCC 4 cut(s) 195, 452, 537, 709
BsiHKAI GWGCWC 1 cut(s) 315
BslFI GGGAC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 4 cut(s) 195, 452, 537, 709
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 315, 421
Bsp143I GATC 3 cut(s) 172, 367, 600
Bsp19I CCATGG 3 cut(s) 430, 486, 520
BspACI CCGC 1 cut(s) 668
BspANI GGCC 4 cut(s) 195, 452, 537, 709
BspCNI CTCAG 2 cut(s) 215, 301
BspFNI CGCG 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 568
BspPI GGATC 2 cut(s) 180, 362
BspT104I TTCGAA 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 2 cut(s) 196, 209
BssECI CCNNGG 6 cut(s) 135, 430, 486, 520, 539, 704
BssMI GATC 3 cut(s) 172, 367, 600
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 5 cut(s) 430, 486, 520, 539, 704
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 4 cut(s) 121, 154, 292, 517
Bst6I CTCTTC 2 cut(s) 234, 240
BstBI TTCGAA 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 111, 202, 309, 645
BstDSI CCRYGG 3 cut(s) 430, 486, 520
BstF5I GGATG 1 cut(s) 728
BstFNI CGCG 1 cut(s) 615
BstKTI GATC 3 cut(s) 175, 370, 603
BstMBI GATC 3 cut(s) 172, 367, 600
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 493, 677
BstX2I RGATCY 2 cut(s) 367, 600
BstYI RGATCY 2 cut(s) 367, 600
BsuRI GGCC 4 cut(s) 195, 452, 537, 709
BtgI CCRYGG 3 cut(s) 430, 486, 520
BtgZI GCGATG 1 cut(s) 596
BtsCI GGATG 1 cut(s) 728
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 2 cut(s) 216, 419
Cfr13I GGNCC 1 cut(s) 536
Csp6I GTAC 1 cut(s) 150
CviAII CATG 4 cut(s) 431, 487, 521, 744
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 4 cut(s) 111, 202, 309, 645
DpnI GATC 3 cut(s) 174, 369, 602
DpnII GATC 3 cut(s) 172, 367, 600
DraI TTTAAA 2 cut(s) 73, 364
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 234, 240
EarI CTCTTC 2 cut(s) 234, 240
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 5 cut(s) 430, 486, 520, 539, 704
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 315
Eco32I GATATC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 134
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 5 cut(s) 430, 486, 520, 539, 704
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 5 cut(s) 430, 486, 520, 539, 704
FaeI CATG 4 cut(s) 434, 490, 524, 747
FaqI GGGAC 1 cut(s) 362
FatI CATG 4 cut(s) 430, 486, 520, 743
Fnu4HI GCNGC 2 cut(s) 482, 691
FokI GGATG 1 cut(s) 715
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 482, 691
FspBI CTAG 2 cut(s) 57, 330
GluI GCNGC 2 cut(s) 482, 691
GsuI CTGGAG 2 cut(s) 118, 192
HaeIII GGCC 4 cut(s) 195, 452, 537, 709
Hin1II CATG 4 cut(s) 434, 490, 524, 747
HinfI GANTC 3 cut(s) 7, 36, 283
HphI GGTGA 4 cut(s) 12, 16, 38, 166
Hpy188I TCNGA 3 cut(s) 177, 288, 574
Hpy188III TCNNGA 3 cut(s) 33, 79, 308
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 4 cut(s) 121, 154, 292, 517
HpyCH4IV ACGT 1 cut(s) 380
HpyF3I CTNAG 4 cut(s) 111, 202, 309, 645
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 4 cut(s) 434, 490, 524, 747
Kzo9I GATC 3 cut(s) 172, 367, 600
LmnI GCTCC 2 cut(s) 137, 211
Lsp1109I GCAGC 2 cut(s) 493, 677
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 57, 330
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 44
MalI GATC 3 cut(s) 174, 369, 602
MboI GATC 3 cut(s) 172, 367, 600
MboII GAAGA 4 cut(s) 169, 251, 257, 610
MflI RGATCY 2 cut(s) 367, 600
MhlI GDGCHC 2 cut(s) 315, 421
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 5 cut(s) 95, 167, 256, 397, 634
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 9 cut(s) 177, 212, 235, 292, 527, 580, 651, 706, 742
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 5 cut(s) 63, 72, 105, 141, 363
Msp20I TGGCCA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 615
NcoI CCATGG 3 cut(s) 430, 486, 520
NdeII GATC 3 cut(s) 172, 367, 600
NlaIII CATG 4 cut(s) 434, 490, 524, 747
NlaIV GGNNCC 1 cut(s) 568
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 44
NspV TTCGAA 1 cut(s) 224
PceI AGGCCT 1 cut(s) 452
PctI GAATGC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 7, 283
PkrI GCNGC 2 cut(s) 483, 692
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 568
PspPI GGNCC 1 cut(s) 536
PsrI GAACNNNNNNTAC 4 cut(s) 182, 214, 489, 521
PsuI RGATCY 2 cut(s) 367, 600
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 5 cut(s) 63, 72, 105, 141, 363
SatI GCNGC 2 cut(s) 482, 691
Sau3AI GATC 3 cut(s) 172, 367, 600
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 2 cut(s) 315, 421
SetI ASST 9 cut(s) 71, 188, 208, 223, 315, 335, 383, 572, 716
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 224
Sse9I AATT 5 cut(s) 95, 167, 256, 397, 634
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 1 cut(s) 668
SspMI CTAG 2 cut(s) 57, 330
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 5 cut(s) 430, 486, 520, 539, 704
TaaI ACNGT 4 cut(s) 121, 154, 292, 517
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 224, 336, 556
TasI AATT 5 cut(s) 95, 167, 256, 397, 634
TfiI GAWTC 2 cut(s) 7, 283
Tru1I TTAA 5 cut(s) 63, 72, 105, 141, 363
Tru9I TTAA 5 cut(s) 63, 72, 105, 141, 363
TscAI CASTG 2 cut(s) 216, 426
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 481, 690
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 717
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 216, 426
XapI RAATTY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XspI CTAG 2 cut(s) 57, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.