Rh1DG269800

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016087
Physical Location & Seq
Reverse (-)
48572349 .. 48574705
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG269800.1

Sequence Viewer

Length: 747 bp
ATGGCTCTTCTCGTTCCGTCACTGGAAATCTCCGTTGTCTTCTCTAACCCTAACCCTAAACGTAAAGGCTTTCGATTTCCGACGAACTTCGGGTCGAAATCCAGGTCCACGGTTAGGGTTTGCGCCGGGGTTAAAGACAGTGCAGTGAGGGCGTCGGAATTGGATCGGAATTTAAGGTCGCACGGGCAGTTCTCGGCTCCGGTGAAGCAGGGTCCGAAGCCGAGCAAGGAAGATCAAGAGAAGCAGGAGTACTATGTGAATATTGGGTATGCGATTGGGACTCTGAGGGAGGAGTTTCCCGAGCTGTTTTTCAGAGAGCTCAGCCTCGATATTTACAGGGATGATATCACATTCAAAGATCCGATCAATACCTTTATGGGCATTGAGAATTACAAGTCTATATTTTCGGCACTACGTTTCCATGGCCAGATATTTTTCAAGGCCTTGTGGGTTGACGTCATTAGTGTATCACAGCCGATGGACAATGTTATAATGGTTCGCTGGACCATCCATGGCATGCCACGAGTCCCTTGGGAAAGTCGTGGTCGATTTGATGGAACCTCAGAGTACAAACTTGACAAGAAAGGGAAGATCTATGAGCATCGTGTTGATAACATTGCTCTGAATTCGCCTCCAAAGTTTCAGATTCTGGCCGTAGGCGATATAATGCAATCTCTTGGGTGCCCTTCAACTCCAAAGCCAACATTTTTTGAAACTTCATCGTTGCAATCTTCAAAGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

248

Amino Acids

28.27

Weight (kDa)

9.45

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 91 - 201 4.9e-39 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46220
fragaria_vesca FvH4_7g15580
malus_domestica MD01G1073100.v1.1
prunus_persica Prupe.2G179500_v2.0.a1
pyrus_communis pycom01g10210
rosa_chinensis RchiOBHm_Chr1g0358261
rosa_laevigata RLG00000027979
rosa_multiflora Rmu_co8490635.1_g000001 Rmu_sc0002071.1_g000013
rosa_roxburghii Rroxscaffold_4G00298320
rosa_rugosa Rorug01G0259900
rosa_samantha Rh1BG241100 Rh1CG257600 Rh1DG269800
rosa_wichuraiana Rw1G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AatII GACGTC 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 681
AclWI GGATC 2 cut(s) 171, 353
AcoI YGGCCR 2 cut(s) 424, 651
AcsI RAATTY 2 cut(s) 169, 625
AcyI GRCGYC 2 cut(s) 152, 456
AfaI GTAC 2 cut(s) 251, 569
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 5 cut(s) 355, 439, 690, 713, 735
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 304, 319
AluI AGCT 2 cut(s) 304, 319
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 2 cut(s) 171, 353
AlwNI CAGNNNCTG 1 cut(s) 649
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 3 cut(s) 424, 441, 651
ApoI RAATTY 2 cut(s) 169, 625
ArsI GACNNNNNNTTYG 4 cut(s) 77, 89, 109, 121
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 105, 212, 504
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 3 cut(s) 105, 212, 504
BaeGI GKGCMC 1 cut(s) 686
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
BauI CACGAG 1 cut(s) 522
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 3 cut(s) 472, 515, 548
BceAI ACGGC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 1 cut(s) 127
BglII AGATCT 1 cut(s) 591
BlpI GCTNAGC 1 cut(s) 320
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 103, 127
Bme18I GGWCC 3 cut(s) 105, 212, 504
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 3 cut(s) 105, 212, 504
BmiI GGNNCC 4 cut(s) 198, 213, 559, 683
BmrFI CCNGG 2 cut(s) 103, 127
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 127
BsaHI GRCGYC 2 cut(s) 152, 456
BsaJI CCNNGG 5 cut(s) 108, 126, 421, 511, 530
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 5 cut(s) 108, 126, 421, 511, 530
BseGI GGATG 2 cut(s) 346, 507
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 3 cut(s) 275, 334, 576
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 3 cut(s) 426, 443, 653
BshNI GGYRCC 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 126, 200
BslFI GGGAC 2 cut(s) 292, 512
BslI CCNNNNNNNGG 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 292, 512
BsnI GGCC 3 cut(s) 426, 443, 653
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 321, 686
Bsp143I GATC 5 cut(s) 163, 232, 358, 363, 591
Bsp1720I GCTNAGC 1 cut(s) 320
Bsp19I CCATGG 2 cut(s) 421, 511
BspANI GGCC 3 cut(s) 426, 443, 653
BspCNI CTCAG 3 cut(s) 276, 333, 575
BspLI GGNNCC 4 cut(s) 198, 213, 559, 683
BspPI GGATC 2 cut(s) 171, 353
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 615
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 5 cut(s) 108, 126, 421, 511, 530
BssMI GATC 5 cut(s) 163, 232, 358, 363, 591
BssNI GRCGYC 2 cut(s) 152, 456
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 3 cut(s) 421, 511, 530
Bst2BI CACGAG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 112, 140
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 2 cut(s) 152, 456
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 3 cut(s) 284, 320, 562
BstDSI CCRYGG 3 cut(s) 108, 421, 511
BstF5I GGATG 2 cut(s) 346, 507
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 5 cut(s) 166, 235, 361, 366, 594
BstMBI GATC 5 cut(s) 163, 232, 358, 363, 591
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 101, 125
BstSLI GKGCMC 1 cut(s) 686
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 358, 591
BstYI RGATCY 2 cut(s) 358, 591
BsuRI GGCC 3 cut(s) 426, 443, 653
BtgI CCRYGG 3 cut(s) 108, 421, 511
BtsCI GGATG 2 cut(s) 346, 507
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 20, 145, 150
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 1 cut(s) 649
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 105, 212, 504
CseI GACGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 250, 568
CviAII CATG 3 cut(s) 422, 512, 517
CviQI GTAC 2 cut(s) 250, 568
DdeI CTNAG 3 cut(s) 284, 320, 562
DpnI GATC 5 cut(s) 165, 234, 360, 365, 593
DpnII GATC 5 cut(s) 163, 232, 358, 363, 591
EaeI YGGCCR 2 cut(s) 424, 651
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 3 cut(s) 421, 511, 530
Eco147I AGGCCT 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 3 cut(s) 105, 212, 504
Eco53kI GAGCTC 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 421, 511, 530
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 3 cut(s) 421, 511, 530
FaeI CATG 3 cut(s) 425, 515, 520
FaqI GGGAC 2 cut(s) 292, 512
FatI CATG 3 cut(s) 421, 511, 516
FokI GGATG 2 cut(s) 353, 494
FriOI GRGCYC 1 cut(s) 321
GlaI GCGC 1 cut(s) 124
HaeIII GGCC 3 cut(s) 426, 443, 653
HapII CCGG 2 cut(s) 126, 200
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 2 cut(s) 152, 456
Hin1II CATG 3 cut(s) 425, 515, 520
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 3 cut(s) 280, 525, 646
HpaII CCGG 2 cut(s) 126, 200
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 108, 454
Hpy188III TCNNGA 2 cut(s) 236, 299
Hpy8I GTNNAC 2 cut(s) 108, 454
Hpy99I CGWCG 2 cut(s) 85, 157
HpyAV CCTTC 1 cut(s) 696
HpyCH4III ACNGT 2 cut(s) 112, 140
HpyCH4IV ACGT 3 cut(s) 61, 415, 456
HpyCH4V TGCA 3 cut(s) 143, 670, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 3 cut(s) 284, 320, 562
HpySE526I ACGT 3 cut(s) 61, 415, 456
Hsp92I GRCGYC 2 cut(s) 152, 456
Hsp92II CATG 3 cut(s) 425, 515, 520
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 5 cut(s) 163, 232, 358, 363, 591
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 202
LweI GCATC 1 cut(s) 610
MaeII ACGT 3 cut(s) 61, 415, 456
MaeIII GTNAC 1 cut(s) 18
MalI GATC 5 cut(s) 165, 234, 360, 365, 593
MboI GATC 5 cut(s) 163, 232, 358, 363, 591
MboII GAAGA 4 cut(s) 31, 242, 601, 723
MflI RGATCY 2 cut(s) 358, 591
MhlI GDGCHC 2 cut(s) 321, 686
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 4 cut(s) 158, 169, 388, 625
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 2 cut(s) 274, 534
MmeI TCCRAC 2 cut(s) 104, 135
MnlI CCTC 7 cut(s) 141, 279, 283, 335, 571, 642, 732
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
MseI TTAA 2 cut(s) 132, 173
Msp20I TGGCCA 1 cut(s) 426
MspI CCGG 2 cut(s) 126, 200
MspR9I CCNGG 2 cut(s) 103, 127
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 127
NcoI CCATGG 2 cut(s) 421, 511
NdeII GATC 5 cut(s) 163, 232, 358, 363, 591
NlaIII CATG 3 cut(s) 425, 515, 520
NlaIV GGNNCC 4 cut(s) 198, 213, 559, 683
NmeAIII GCCGAG 2 cut(s) 173, 246
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PceI AGGCCT 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 646
PleI GAGTC 2 cut(s) 274, 533
PpsI GAGTC 2 cut(s) 274, 533
PsiI TTATAA 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 4 cut(s) 198, 213, 559, 683
PspPI GGNCC 3 cut(s) 105, 212, 504
PstNI CAGNNNCTG 1 cut(s) 649
PsuI RGATCY 2 cut(s) 358, 591
RsaI GTAC 2 cut(s) 251, 569
RsaNI GTAC 2 cut(s) 250, 568
SacI GAGCTC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 132, 173
Sau3AI GATC 5 cut(s) 163, 232, 358, 363, 591
Sau96I GGNCC 3 cut(s) 105, 212, 504
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 2 cut(s) 274, 534
ScrFI CCNGG 2 cut(s) 103, 127
SduI GDGCHC 2 cut(s) 321, 686
SetI ASST 9 cut(s) 64, 107, 179, 306, 321, 374, 418, 459, 563
SfaNI GCATC 1 cut(s) 610
SinI GGWCC 3 cut(s) 105, 212, 504
SphI GCATGC 1 cut(s) 520
Sse9I AATT 4 cut(s) 158, 169, 388, 625
SseBI AGGCCT 1 cut(s) 443
SspI AATATT 1 cut(s) 262
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 101, 125
StyI CCWWGG 3 cut(s) 421, 511, 530
TaaI ACNGT 2 cut(s) 112, 140
TaiI ACGT 3 cut(s) 64, 418, 459
TaqI TCGA 4 cut(s) 73, 95, 327, 547
TasI AATT 4 cut(s) 158, 169, 388, 625
TatI WGTACW 2 cut(s) 249, 567
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 2 cut(s) 132, 173
Tru9I TTAA 2 cut(s) 132, 173
TscAI CASTG 3 cut(s) 27, 145, 150
TseFI GTSAC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 708
TspGWI ACGGA 2 cut(s) 6, 22
TspRI CASTG 3 cut(s) 27, 145, 150
VpaK11BI GGWCC 3 cut(s) 105, 212, 504
XapI RAATTY 2 cut(s) 169, 625
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
ZraI GACGTC 1 cut(s) 457
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.