Rmu_co8490635.1_g000001

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8490635.1
OG0016087
Physical Location & Seq
Reverse (-)
1146 .. 2433
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8490635.1_g000001.1.cds

Sequence Viewer

Length: 486 bp
atggggtatgcgattcggactctgagggaggagtttcccgagctgtttttcagagagcttagcctcgacatttacagggatgatatcacattcaaagatccgatcaatacctttatgggcattgagaattacaagtctatattttcggcactacgtttccatggccagatatttttcaaggccttgtgggttgacgtcattagtgtatcgcagccgatggacaatgttataatggttcgctggactatccatggcatgccacgagtcccttgggaaagtcgtggtcgatttgatggaacctcagagtacaaacttgacaagaaagggaagatctatgagcatcgtgttgataacattgccctgaattcgcctccaaagtttcacattctggccgtaggcgatataatgcaatctcttgggtgcccttcaactccaaagccaacattttttgaaacttcatcattgccatcttcaaagaggagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

161

Amino Acids

18.69

Weight (kDa)

8.69

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46220
fragaria_vesca FvH4_7g15580
malus_domestica MD01G1073100.v1.1
prunus_persica Prupe.2G179500_v2.0.a1
pyrus_communis pycom01g10210
rosa_chinensis RchiOBHm_Chr1g0358261
rosa_laevigata RLG00000027979
rosa_multiflora Rmu_co8490635.1_g000001 Rmu_sc0002071.1_g000013
rosa_roxburghii Rroxscaffold_4G00298320
rosa_rugosa Rorug01G0259900
rosa_samantha Rh1BG241100 Rh1CG257600 Rh1DG269800
rosa_wichuraiana Rw1G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 420
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 2 cut(s) 163, 390
AcsI RAATTY 1 cut(s) 364
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 5 cut(s) 94, 178, 429, 452, 474
AluBI AGCT 2 cut(s) 43, 58
AluI AGCT 2 cut(s) 43, 58
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 3 cut(s) 163, 180, 390
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 420
BauI CACGAG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 223
BccI CCATC 3 cut(s) 211, 287, 475
BceAI ACGGC 1 cut(s) 377
BglII AGATCT 1 cut(s) 330
BisI GCNGC 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 298, 422
BmsI GCATC 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 160, 250, 269
Bse3DI GCAATG 2 cut(s) 354, 461
BseDI CCNNGG 3 cut(s) 160, 250, 269
BseGI GGATG 1 cut(s) 85
BseMI GCAATG 2 cut(s) 354, 461
BseMII CTCAG 2 cut(s) 14, 315
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 3 cut(s) 165, 182, 392
BshNI GGYRCC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 3 cut(s) 165, 182, 392
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 3 cut(s) 97, 102, 330
Bsp1720I GCTNAGC 1 cut(s) 59
Bsp19I CCATGG 2 cut(s) 160, 250
BspANI GGCC 3 cut(s) 165, 182, 392
BspCNI CTCAG 2 cut(s) 15, 314
BspLI GGNNCC 2 cut(s) 298, 422
BspPI GGATC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 420
BsrDI GCAATG 2 cut(s) 354, 461
BssECI CCNNGG 3 cut(s) 160, 250, 269
BssMI GATC 3 cut(s) 97, 102, 330
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 3 cut(s) 160, 250, 269
Bst2BI CACGAG 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 3 cut(s) 23, 59, 301
BstDSI CCRYGG 2 cut(s) 160, 250
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 3 cut(s) 100, 105, 333
BstMBI GATC 3 cut(s) 97, 102, 330
BstNSI RCATGY 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 2 cut(s) 97, 330
BstYI RGATCY 2 cut(s) 97, 330
BsuRI GGCC 3 cut(s) 165, 182, 392
BtgI CCRYGG 2 cut(s) 160, 250
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 161, 251, 256
CviJI RGCY 8 cut(s) 43, 58, 63, 165, 182, 214, 392, 439
CviKI_1 RGCY 8 cut(s) 43, 58, 63, 165, 182, 214, 392, 439
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 23, 59, 301
DpnI GATC 3 cut(s) 99, 104, 332
DpnII GATC 3 cut(s) 97, 102, 330
EaeI YGGCCR 2 cut(s) 163, 390
Eco130I CCWWGG 3 cut(s) 160, 250, 269
Eco147I AGGCCT 1 cut(s) 182
Eco32I GATATC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 364
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 3 cut(s) 160, 250, 269
ErhI CCWWGG 3 cut(s) 160, 250, 269
FaeI CATG 3 cut(s) 164, 254, 259
FaiI YATR 9 cut(s) 9, 116, 140, 162, 230, 252, 257, 336, 404
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 160, 250, 255
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
HaeIII GGCC 3 cut(s) 165, 182, 392
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 164, 254, 259
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 3 cut(s) 13, 19, 264
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 18, 24, 53, 102, 304
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 435
HpyCH4IV ACGT 2 cut(s) 154, 195
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 3 cut(s) 23, 59, 301
HpySE526I ACGT 2 cut(s) 154, 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 164, 254, 259
Kzo9I GATC 3 cut(s) 97, 102, 330
LpnPI CCDG 5 cut(s) 61, 179, 226, 374, 374
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 349
MaeII ACGT 2 cut(s) 154, 195
MalI GATC 3 cut(s) 99, 104, 332
MboI GATC 3 cut(s) 97, 102, 330
MboII GAAGA 2 cut(s) 340, 462
MflI RGATCY 2 cut(s) 97, 330
MhlI GDGCHC 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 127, 364
MluNI TGGCCA 1 cut(s) 165
MlyI GAGTC 2 cut(s) 13, 273
MnlI CCTC 6 cut(s) 18, 22, 74, 310, 381, 471
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 165
NcoI CCATGG 2 cut(s) 160, 250
NdeII GATC 3 cut(s) 97, 102, 330
NlaIII CATG 3 cut(s) 164, 254, 259
NlaIV GGNNCC 2 cut(s) 298, 422
NspI RCATGY 1 cut(s) 259
PaeI GCATGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 182
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 2 cut(s) 13, 272
PpsI GAGTC 2 cut(s) 13, 272
PsiI TTATAA 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 298, 422
PsuI RGATCY 2 cut(s) 97, 330
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 3 cut(s) 97, 102, 330
SchI GAGTC 2 cut(s) 13, 273
SduI GDGCHC 1 cut(s) 425
SetI ASST 6 cut(s) 45, 60, 113, 157, 198, 302
SfaNI GCATC 1 cut(s) 349
SphI GCATGC 1 cut(s) 259
Sse9I AATT 2 cut(s) 127, 364
SseBI AGGCCT 1 cut(s) 182
StuI AGGCCT 1 cut(s) 182
StyI CCWWGG 3 cut(s) 160, 250, 269
TaiI ACGT 2 cut(s) 157, 198
TaqI TCGA 2 cut(s) 66, 286
TasI AATT 2 cut(s) 127, 364
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 13
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 447
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.