RchiOBHm_Chr1g0358261

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016087
Physical Location & Seq
Reverse (-)
50311758 .. 50313910
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58343

Sequence Viewer

Length: 741 bp
ATGACTCTTCTCGTTCCGTCACCGGAAATCTCCATAGTCTTCTCTAACCCTAACCGTAAAGGCTTTCGAATTCCGACGAACTTCGGGTCGAAATCCAGGTCCACGGTTAGGGTTTGCGCCGGGGTTAAAGACAGTGCAGTGAGGGCGTCGGAATTGGATCGGAATTTAAGGTCGTACGGGCAGTTCTCGGCTCCGGTGAAGCAGGGTCCGAAGCCGAGCAAGGAAGATCAAGAGAAGCAGGAGTACTATGTGAATATGGGGTATGCGATTCGGACTCTGAGGGAGGAGTTTCCCGAGCTGTTTTTCAGAGAGCTTAGCCTCGACATTTACAGGGATGATATCACATTCAAAGATCCGATCAATACCTTTATGGGCATTGAGAATTACAAGTCTATATTTTCGGCATTACGTTTCCATGGCCAGATATTTTTCAAGGCCTTGTGGGTTGACGTCATTAGTGTATCGCAGCCGATGGACAATATTATAATGGTTCGCTGGACTATCCATGGCATGCCACGAGTCCCTTGGGAAAGTCGTGGTCGATTTGATGGAACCTCAGAGTACAAACTTGACAAGAAAGGGAAGATCTATGAGCATCGTGTTGATAACATTGCTCTGAATTCGCCTCCAAAGTTTCAGATTCTGGCCGTAGGTGATATAATGCAATCTCTTGGGTGCCCTTCAACTCCAAAGCCAACATTTTTTGAAACTTCATCATTGCCATCTTCAAAGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

246

Amino Acids

28.16

Weight (kDa)

9.45

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 89 - 199 3e-39 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46220
fragaria_vesca FvH4_7g15580
malus_domestica MD01G1073100.v1.1
prunus_persica Prupe.2G179500_v2.0.a1
pyrus_communis pycom01g10210
rosa_chinensis RchiOBHm_Chr1g0358261
rosa_laevigata RLG00000027979
rosa_multiflora Rmu_co8490635.1_g000001 Rmu_sc0002071.1_g000013
rosa_roxburghii Rroxscaffold_4G00298320
rosa_rugosa Rorug01G0259900
rosa_samantha Rh1BG241100 Rh1CG257600 Rh1DG269800
rosa_wichuraiana Rw1G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AatII GACGTC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 675
AclWI GGATC 2 cut(s) 165, 347
AcoI YGGCCR 2 cut(s) 418, 645
AcsI RAATTY 3 cut(s) 69, 163, 619
AcyI GRCGYC 2 cut(s) 146, 450
AfaI GTAC 3 cut(s) 176, 245, 563
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 5 cut(s) 349, 433, 684, 707, 729
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 2 cut(s) 298, 313
AluI AGCT 2 cut(s) 298, 313
AlwI GGATC 2 cut(s) 165, 347
AlwNI CAGNNNCTG 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 418, 435, 645
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 3 cut(s) 69, 163, 619
ArsI GACNNNNNNTTYG 4 cut(s) 71, 83, 103, 115
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 99, 206
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 12, 208, 665
AsuII TTCGAA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 2 cut(s) 99, 206
BaeGI GKGCMC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 420
BanI GGYRCC 1 cut(s) 675
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 466, 542, 730
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 1 cut(s) 97
BcnI CCSGG 1 cut(s) 121
BglII AGATCT 1 cut(s) 585
BisI GCNGC 1 cut(s) 467
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 468
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 97, 121
Bme18I GGWCC 2 cut(s) 99, 206
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 99, 206
BmiI GGNNCC 4 cut(s) 192, 207, 553, 677
BmrFI CCNGG 2 cut(s) 97, 121
BmsI GCATC 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 2 cut(s) 146, 450
BsaJI CCNNGG 5 cut(s) 102, 120, 415, 505, 524
BsaWI WCCGGW 2 cut(s) 22, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 609, 716
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 5 cut(s) 102, 120, 415, 505, 524
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 2 cut(s) 609, 716
BseMII CTCAG 2 cut(s) 269, 570
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 3 cut(s) 420, 437, 647
BshNI GGYRCC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 23, 120, 194
BsiWI CGTACG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 3 cut(s) 420, 437, 647
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 5 cut(s) 157, 226, 352, 357, 585
Bsp1720I GCTNAGC 1 cut(s) 314
Bsp19I CCATGG 2 cut(s) 415, 505
BspANI GGCC 3 cut(s) 420, 437, 647
BspCNI CTCAG 2 cut(s) 270, 569
BspLI GGNNCC 4 cut(s) 192, 207, 553, 677
BspPI GGATC 2 cut(s) 165, 347
BspT104I TTCGAA 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 675
BsrDI GCAATG 2 cut(s) 609, 716
BssECI CCNNGG 5 cut(s) 102, 120, 415, 505, 524
BssMI GATC 5 cut(s) 157, 226, 352, 357, 585
BssNI GRCGYC 2 cut(s) 146, 450
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 3 cut(s) 415, 505, 524
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 56, 106, 134
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 2 cut(s) 146, 450
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 3 cut(s) 278, 314, 556
BstDSI CCRYGG 3 cut(s) 102, 415, 505
BstF5I GGATG 1 cut(s) 340
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 5 cut(s) 160, 229, 355, 360, 588
BstMBI GATC 5 cut(s) 157, 226, 352, 357, 585
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 95, 119
BstSLI GKGCMC 1 cut(s) 680
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 352, 585
BstYI RGATCY 2 cut(s) 352, 585
BsuRI GGCC 3 cut(s) 420, 437, 647
BtgI CCRYGG 3 cut(s) 102, 415, 505
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 139, 144
Cac8I GCNNGC 1 cut(s) 512
CaiI CAGNNNCTG 1 cut(s) 643
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 99, 206
CseI GACGC 1 cut(s) 135
Csp6I GTAC 3 cut(s) 175, 244, 562
CviAII CATG 3 cut(s) 416, 506, 511
CviQI GTAC 3 cut(s) 175, 244, 562
DdeI CTNAG 3 cut(s) 278, 314, 556
DpnI GATC 5 cut(s) 159, 228, 354, 359, 587
DpnII GATC 5 cut(s) 157, 226, 352, 357, 585
EaeI YGGCCR 2 cut(s) 418, 645
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 3 cut(s) 415, 505, 524
Eco147I AGGCCT 1 cut(s) 437
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 99, 206
Eco88I CYCGRG 1 cut(s) 293
EcoRI GAATTC 2 cut(s) 69, 619
EcoRII CCWGG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 3 cut(s) 415, 505, 524
ErhI CCWWGG 3 cut(s) 415, 505, 524
FaeI CATG 3 cut(s) 419, 509, 514
FaqI GGGAC 1 cut(s) 506
FatI CATG 3 cut(s) 415, 505, 510
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 467
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 467
HaeIII GGCC 3 cut(s) 420, 437, 647
HapII CCGG 3 cut(s) 23, 120, 194
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 2 cut(s) 146, 450
Hin1II CATG 3 cut(s) 419, 509, 514
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 5 cut(s) 4, 268, 274, 519, 640
HpaII CCGG 3 cut(s) 23, 120, 194
HphI GGTGA 3 cut(s) 12, 208, 665
Hpy166II GTNNAC 2 cut(s) 102, 448
Hpy188III TCNNGA 2 cut(s) 230, 293
Hpy8I GTNNAC 2 cut(s) 102, 448
Hpy99I CGWCG 2 cut(s) 79, 151
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 3 cut(s) 56, 106, 134
HpyCH4IV ACGT 2 cut(s) 409, 450
HpyCH4V TGCA 2 cut(s) 137, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 278, 314, 556
HpySE526I ACGT 2 cut(s) 409, 450
Hsp92I GRCGYC 2 cut(s) 146, 450
Hsp92II CATG 3 cut(s) 419, 509, 514
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 5 cut(s) 157, 226, 352, 357, 585
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 1 cut(s) 604
MaeII ACGT 2 cut(s) 409, 450
MaeIII GTNAC 1 cut(s) 18
MalI GATC 5 cut(s) 159, 228, 354, 359, 587
MboI GATC 5 cut(s) 157, 226, 352, 357, 585
MboII GAAGA 4 cut(s) 31, 236, 595, 717
MflI RGATCY 2 cut(s) 352, 585
MhlI GDGCHC 1 cut(s) 680
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 5 cut(s) 69, 152, 163, 382, 619
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 268, 528
MmeI TCCRAC 2 cut(s) 98, 129
MnlI CCTC 7 cut(s) 135, 273, 277, 329, 565, 636, 726
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 2 cut(s) 126, 167
Msp20I TGGCCA 1 cut(s) 420
MspI CCGG 3 cut(s) 23, 120, 194
MspR9I CCNGG 2 cut(s) 97, 121
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 2 cut(s) 415, 505
NdeII GATC 5 cut(s) 157, 226, 352, 357, 585
NlaIII CATG 3 cut(s) 419, 509, 514
NlaIV GGNNCC 4 cut(s) 192, 207, 553, 677
NmeAIII GCCGAG 2 cut(s) 167, 240
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 514
NspV TTCGAA 1 cut(s) 67
PaeI GCATGC 1 cut(s) 514
PceI AGGCCT 1 cut(s) 437
PfeI GAWTC 2 cut(s) 268, 640
Pfl23II CGTACG 1 cut(s) 174
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 2 cut(s) 268, 527
PpsI GAGTC 2 cut(s) 268, 527
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspLI CGTACG 1 cut(s) 174
PspN4I GGNNCC 4 cut(s) 192, 207, 553, 677
PspPI GGNCC 2 cut(s) 99, 206
PsrI GAACNNNNNNTAC 2 cut(s) 167, 199
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 352, 585
RsaI GTAC 3 cut(s) 176, 245, 563
RsaNI GTAC 3 cut(s) 175, 244, 562
SaqAI TTAA 2 cut(s) 126, 167
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 5 cut(s) 157, 226, 352, 357, 585
Sau96I GGNCC 2 cut(s) 99, 206
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 268, 528
ScrFI CCNGG 2 cut(s) 97, 121
SduI GDGCHC 1 cut(s) 680
SetI ASST 9 cut(s) 101, 173, 300, 315, 368, 412, 453, 557, 655
SfaNI GCATC 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 67
SinI GGWCC 2 cut(s) 99, 206
SphI GCATGC 1 cut(s) 514
Sse9I AATT 5 cut(s) 69, 152, 163, 382, 619
SseBI AGGCCT 1 cut(s) 437
SspI AATATT 1 cut(s) 481
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 2 cut(s) 95, 119
StyI CCWWGG 3 cut(s) 415, 505, 524
TaaI ACNGT 3 cut(s) 56, 106, 134
TaiI ACGT 2 cut(s) 412, 453
TaqI TCGA 4 cut(s) 67, 89, 321, 541
TasI AATT 5 cut(s) 69, 152, 163, 382, 619
TatI WGTACW 2 cut(s) 243, 561
TfiI GAWTC 2 cut(s) 268, 640
Tru1I TTAA 2 cut(s) 126, 167
Tru9I TTAA 2 cut(s) 126, 167
TscAI CASTG 2 cut(s) 139, 144
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 702
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 2 cut(s) 139, 144
VpaK11BI GGWCC 2 cut(s) 99, 206
XapI RAATTY 3 cut(s) 69, 163, 619
XceI RCATGY 1 cut(s) 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 522
ZraI GACGTC 1 cut(s) 451
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.