Rorug01G0259900

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000601
Physical Location & Seq
Reverse (-)
36922423 .. 36925655
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0259900.1

Sequence Viewer

Length: 1077 bp
ATGAAGAACGAAGAACAAGCAAGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATATGTGTATAACAGGCTACAATTCAGTTATGGGTGGTACTTCACATTTGTACAAGGATTTGTGTACCTATTTCTGATTTATCTTCAAGGCTTTACCACCAAGCAAATGGTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAATTACCCTGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGTGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGCTGTTTTGCTCTACGGTAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTTGAAGCTATGGCCACGTTTATTGGCCAAGTTTCTGTCCTTTCCCTCATTGCACTTTTTGGTGCTGCCACCACAGCCATGATAACAACGGCTAGAAAGGCAGTGACATTATTGCTATCATACTTGATATTCACAAAGCCATTAACCGAAGAGCACGGGACTGGACTTCTGCTCATAGGTATGGGGATCACATTGAAGCTCTTGCCTGAGAATAAACCATACCAAAGGGTTTCAAACTCATCATCTGGCAAACCCAAGAGTTCAAAGCCAGCTCATAACGAAGAGGAGAGAATTCAACTTGACCATCAACATGTTGGAGAAGATGAAGAAAAGAGGCCATTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

358

Amino Acids

40.01

Weight (kDa)

8.52

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UAA PF08449 23 - 310 1.5e-80 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 646
AccI GTMKAC 1 cut(s) 634
AciI CCGC 2 cut(s) 403, 473
AclWI GGATC 2 cut(s) 451, 923
AcoI YGGCCR 2 cut(s) 741, 754
AcsI RAATTY 1 cut(s) 1020
AcuI CTGAAG 1 cut(s) 481
AfaI GTAC 5 cut(s) 167, 180, 194, 410, 425
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 1039
AgsI TTSAA 8 cut(s) 215, 346, 679, 734, 925, 963, 993, 1025
AjnI CCWGG 1 cut(s) 391
AloI GAACNNNNNNTCC 2 cut(s) 679, 711
AluBI AGCT 5 cut(s) 265, 337, 737, 928, 1001
AluI AGCT 5 cut(s) 265, 337, 737, 928, 1001
Alw21I GWGCWC 2 cut(s) 532, 885
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 2 cut(s) 451, 923
AoxI GGCC 3 cut(s) 741, 754, 1064
ApeKI GCWGC 2 cut(s) 64, 794
ApoI RAATTY 1 cut(s) 1020
AsuHPI GGTGA 3 cut(s) 250, 457, 526
BalI TGGCCA 2 cut(s) 743, 756
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 532, 885
BbvI GCAGC 2 cut(s) 76, 781
BccI CCATC 3 cut(s) 511, 595, 1041
BceAI ACGGC 1 cut(s) 834
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 2 cut(s) 533, 822
BisI GCNGC 2 cut(s) 65, 795
BlsI GCNGC 2 cut(s) 66, 796
Bme1390I CCNGG 1 cut(s) 393
BmiI GGNNCC 3 cut(s) 307, 382, 648
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 466, 597, 712
BpiI GAAGAC 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 469
BsaAI YACGTR 1 cut(s) 712
BsaJI CCNNGG 2 cut(s) 245, 309
BsaXI ACNNNNNCTCC 4 cut(s) 596, 626, 679, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 895
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 245, 309
BseGI GGATG 2 cut(s) 481, 703
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 713, 927
BseNI ACTGG 1 cut(s) 895
BseRI GAGGAG 1 cut(s) 1028
BseXI GCAGC 2 cut(s) 76, 781
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 3 cut(s) 743, 756, 1066
BshNI GGYRCC 1 cut(s) 646
BsiHKAI GWGCWC 2 cut(s) 532, 885
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 1 cut(s) 492
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 901
BsnI GGCC 3 cut(s) 743, 756, 1066
Bsp1286I GDGCHC 3 cut(s) 287, 532, 885
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 2 cut(s) 456, 915
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 403, 473
BspANI GGCC 3 cut(s) 743, 756, 1066
BspCNI CTCAG 2 cut(s) 712, 928
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 307, 382, 648
BspPI GGATC 2 cut(s) 451, 923
BspQI GCTCTTC 2 cut(s) 88, 873
BspT107I GGYRCC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 895
BssECI CCNNGG 2 cut(s) 245, 309
BssMI GATC 2 cut(s) 456, 915
BssT1I CCWWGG 2 cut(s) 245, 309
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 3 cut(s) 88, 873, 1005
BstAPI GCANNNNNTGC 1 cut(s) 73
BstAUI TGTACA 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 999
BstDEI CTNAG 3 cut(s) 469, 699, 936
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 481, 703
BstKTI GATC 2 cut(s) 459, 918
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 2 cut(s) 456, 915
BstMWI GCNNNNNNNGC 3 cut(s) 73, 803, 827
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 1043
BstSCI CCNGG 1 cut(s) 391
BstSNI TACGTA 1 cut(s) 712
BstV1I GCAGC 2 cut(s) 76, 781
BstV2I GAAGAC 1 cut(s) 257
BstXI CCANNNNNNTGG 2 cut(s) 235, 601
BsuRI GGCC 3 cut(s) 743, 756, 1066
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 481, 703
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 2 cut(s) 505, 837
Cac8I GCNNGC 1 cut(s) 999
CciI TCATGA 1 cut(s) 418
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 5 cut(s) 166, 179, 193, 409, 424
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 8 cut(s) 246, 290, 419, 538, 580, 693, 808, 1040
CviQI GTAC 5 cut(s) 166, 179, 193, 409, 424
DdeI CTNAG 3 cut(s) 469, 699, 936
DpnI GATC 2 cut(s) 458, 917
DpnII GATC 2 cut(s) 456, 915
EaeI YGGCCR 2 cut(s) 741, 754
Eam1104I CTCTTC 3 cut(s) 88, 873, 1005
EarI CTCTTC 3 cut(s) 88, 873, 1005
EciI GGCGGA 1 cut(s) 418
Eco105I TACGTA 1 cut(s) 712
Eco130I CCWWGG 2 cut(s) 245, 309
Eco24I GRGCYC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 1020
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 245, 309
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 245, 309
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 8 cut(s) 249, 293, 422, 541, 583, 696, 811, 1043
FaqI GGGAC 1 cut(s) 901
FatI CATG 8 cut(s) 245, 289, 418, 537, 579, 692, 807, 1039
FblI GTMKAC 1 cut(s) 634
Fnu4HI GCNGC 2 cut(s) 65, 795
FokI GGATG 2 cut(s) 488, 690
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 65, 795
FspBI CTAG 2 cut(s) 533, 822
GluI GCNGC 2 cut(s) 65, 795
HaeIII GGCC 3 cut(s) 743, 756, 1066
Hin1II CATG 8 cut(s) 249, 293, 422, 541, 583, 696, 811, 1043
HinfI GANTC 2 cut(s) 542, 583
HphI GGTGA 3 cut(s) 250, 457, 526
Hpy166II GTNNAC 3 cut(s) 193, 241, 635
Hpy188I TCNGA 4 cut(s) 49, 204, 456, 1076
Hpy188III TCNNGA 2 cut(s) 419, 587
Hpy8I GTNNAC 3 cut(s) 193, 241, 635
HpyAV CCTTC 2 cut(s) 394, 449
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 4 cut(s) 426, 485, 711, 746
HpyCH4V TGCA 5 cut(s) 332, 434, 479, 562, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 803, 827
HpyF3I CTNAG 3 cut(s) 469, 699, 936
HpySE526I ACGT 4 cut(s) 426, 485, 711, 746
Hsp92II CATG 8 cut(s) 249, 293, 422, 541, 583, 696, 811, 1043
Kzo9I GATC 2 cut(s) 456, 915
LguI GCTCTTC 2 cut(s) 88, 873
LmnI GCTCC 2 cut(s) 311, 380
Lsp1109I GCAGC 2 cut(s) 76, 781
LweI GCATC 3 cut(s) 466, 597, 712
MabI ACCWGGT 1 cut(s) 391
MaeI CTAG 2 cut(s) 533, 822
MaeII ACGT 4 cut(s) 426, 485, 711, 746
MaeIII GTNAC 1 cut(s) 832
MalI GATC 2 cut(s) 458, 917
MboI GATC 2 cut(s) 456, 915
MhlI GDGCHC 3 cut(s) 287, 532, 885
MlsI TGGCCA 2 cut(s) 743, 756
MluCI AATT 6 cut(s) 68, 149, 322, 556, 671, 1020
MluNI TGGCCA 2 cut(s) 743, 756
MmeI TCCRAC 1 cut(s) 1024
MnlI CCTC 6 cut(s) 118, 393, 426, 785, 1006, 1056
Mox20I TGGCCA 2 cut(s) 743, 756
MscI TGGCCA 2 cut(s) 743, 756
MseI TTAA 2 cut(s) 111, 872
MslI CAYNNNNRTG 4 cut(s) 599, 806, 908, 1038
Msp20I TGGCCA 2 cut(s) 743, 756
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 73, 803, 827
NcoI CCATGG 1 cut(s) 245
NdeII GATC 2 cut(s) 456, 915
NlaIII CATG 8 cut(s) 249, 293, 422, 541, 583, 696, 811, 1043
NlaIV GGNNCC 3 cut(s) 307, 382, 648
NmuCI GTSAC 1 cut(s) 832
NspI RCATGY 1 cut(s) 1043
PagI TCATGA 1 cut(s) 418
PciI ACATGT 1 cut(s) 1039
PciSI GCTCTTC 2 cut(s) 88, 873
PfeI GAWTC 2 cut(s) 542, 583
PkrI GCNGC 2 cut(s) 66, 796
Ppu21I YACGTR 1 cut(s) 712
PscI ACATGT 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 307, 382, 648
RsaI GTAC 5 cut(s) 167, 180, 194, 410, 425
RsaNI GTAC 5 cut(s) 166, 179, 193, 409, 424
RseI CAYNNNNRTG 4 cut(s) 599, 806, 908, 1038
SapI GCTCTTC 2 cut(s) 88, 873
SaqAI TTAA 2 cut(s) 111, 872
SatI GCNGC 2 cut(s) 65, 795
Sau3AI GATC 2 cut(s) 456, 915
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 3 cut(s) 287, 532, 885
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 3 cut(s) 466, 597, 712
SmiMI CAYNNNNRTG 4 cut(s) 599, 806, 908, 1038
SnaBI TACGTA 1 cut(s) 712
Sse9I AATT 6 cut(s) 68, 149, 322, 556, 671, 1020
SsiI CCGC 2 cut(s) 403, 473
SspI AATATT 1 cut(s) 573
SspMI CTAG 2 cut(s) 533, 822
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 245, 309
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 4 cut(s) 429, 488, 714, 749
TasI AATT 6 cut(s) 68, 149, 322, 556, 671, 1020
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 542, 583
Tru1I TTAA 2 cut(s) 111, 872
Tru9I TTAA 2 cut(s) 111, 872
TscAI CASTG 2 cut(s) 505, 837
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 2 cut(s) 64, 794
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 5 cut(s) 17, 376, 596, 681, 1068
TspRI CASTG 2 cut(s) 505, 837
XapI RAATTY 1 cut(s) 1020
XceI RCATGY 1 cut(s) 1043
XcmI CCANNNNNNNNNTGG 3 cut(s) 232, 307, 1040
XmiI GTMKAC 1 cut(s) 634
XspI CTAG 2 cut(s) 533, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.