Rmu_sc0002071.1_g000010

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002071.1
OG0000601
Physical Location & Seq
Forward (+)
56435 .. 60257
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002071.1_g000010.1.cds

Sequence Viewer

Length: 828 bp
atggcaccaaagttggggatttcactggcattcctcatttcagtaactctagcactacaaattggagccaatgccgcaggcattgcgatttactggggtcaaaatgggaatgagggtaccttggaagagacctgtgccacaggcaactatgactatgtgaacatagcttttctcccaacattcggcaatggccagactcccatgatcaacctagcaggacattgtgatccttacactaatggctgcactggtttgagctccgacattaagtcgtgccaagcaaaaggggtcaaggttgcaatatatttgtggaacaatttcttgggaggaacttcatcttctcgccctcttggtgacgctgttttggatggaattgattttgatatcgagggaggaacaaacctacattgggatgacctcgctacgttcctctctgcatacagcaaccaaggtaagaaggtttacttgaccgcagcgccccagtgccctttccctgatgcttgggttggaggtgccctcaagacgggcctttttgactacgtttgggtccaattctacaacaaccctccatgccaatactcggccgatatcagcaaccttgtaagtgcatggaatcagtgggtttccgatattccggccaccaagatattccttggtctaccagctgctcctgaagctgctggaagtggctttattcctgtcaatgatctcacttctaaagtgcttccagcaattaaaggttcgtccaagtatggaggggtcatgctttggtccaagtattatgatgatcagactaaatacagtgcttccatcaagaactacctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

275

Amino Acids

29.43

Weight (kDa)

4.78

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 3 cut(s) 4, 116, 512
AccI GTMKAC 1 cut(s) 658
AciI CCGC 2 cut(s) 75, 471
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 3 cut(s) 190, 582, 636
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 5 cut(s) 14, 182, 409, 523, 580
AhdI GACNNNNNGTC 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 4 cut(s) 167, 258, 665, 677
AluI AGCT 4 cut(s) 167, 258, 665, 677
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 221
AoxI GGCC 4 cut(s) 190, 526, 582, 636
ApeKI GCWGC 4 cut(s) 243, 473, 665, 677
Asp700I GAANNNNTTC 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 3 cut(s) 526, 547, 771
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 547, 771
BaeGI GKGCMC 2 cut(s) 488, 517
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 3 cut(s) 4, 116, 512
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 230, 485, 652, 664
BccI CCATC 2 cut(s) 362, 818
BclI TGATCA 2 cut(s) 204, 787
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 3 cut(s) 50, 212, 826
BfoI RGCGCY 1 cut(s) 479
BisI GCNGC 5 cut(s) 75, 244, 474, 666, 678
BlsI GCNGC 5 cut(s) 76, 245, 475, 667, 679
Bme18I GGWCC 2 cut(s) 547, 771
BmeRI GACNNNNNGTC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 526, 547, 771
BmiI GGNNCC 5 cut(s) 6, 67, 118, 514, 548
BmrI ACTGGG 2 cut(s) 103, 475
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 2 cut(s) 103, 475
BplI GAGNNNNNCTC 2 cut(s) 501, 533
BpuEI CTTGAG 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 120, 448, 652
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 182, 409, 523, 580
Bse1I ACTGG 4 cut(s) 30, 98, 253, 481
Bse3DI GCAATG 2 cut(s) 81, 193
BseDI CCNNGG 3 cut(s) 120, 448, 652
BseGI GGATG 2 cut(s) 373, 418
BseLI CCNNNNNNNGG 5 cut(s) 14, 182, 409, 523, 580
BseMI GCAATG 2 cut(s) 81, 193
BseNI ACTGG 4 cut(s) 30, 98, 253, 481
BseSI GKGCMC 2 cut(s) 488, 517
BseX3I CGGCCG 1 cut(s) 582
BseXI GCAGC 4 cut(s) 230, 485, 652, 664
BsgI GTGCAG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 4 cut(s) 192, 528, 584, 638
BshNI GGYRCC 3 cut(s) 4, 116, 512
BsiEI CGRYCG 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 635
BslI CCNNNNNNNGG 5 cut(s) 14, 182, 409, 523, 580
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 4 cut(s) 192, 528, 584, 638
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 260, 488, 517
Bsp143I GATC 4 cut(s) 204, 226, 706, 787
BspACI CCGC 2 cut(s) 75, 471
BspANI GGCC 4 cut(s) 192, 528, 584, 638
BspLI GGNNCC 5 cut(s) 6, 67, 118, 514, 548
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 3 cut(s) 4, 116, 512
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 81, 193
BsrI ACTGG 4 cut(s) 30, 98, 253, 481
BssECI CCNNGG 3 cut(s) 120, 448, 652
BssMI GATC 4 cut(s) 204, 226, 706, 787
BssT1I CCWWGG 3 cut(s) 120, 448, 652
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 373, 418
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 4 cut(s) 207, 229, 709, 790
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 4 cut(s) 204, 226, 706, 787
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 674
BstSLI GKGCMC 2 cut(s) 488, 517
BstV1I GCAGC 4 cut(s) 230, 485, 652, 664
BstZI CGGCCG 1 cut(s) 582
BsuRI GGCC 4 cut(s) 192, 528, 584, 638
BtsCI GGATG 2 cut(s) 373, 418
BtsIMutI CAGTG 5 cut(s) 23, 246, 488, 623, 808
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 3 cut(s) 526, 547, 771
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 117
CviAII CATG 4 cut(s) 202, 570, 609, 763
CviQI GTAC 1 cut(s) 117
DpnI GATC 4 cut(s) 206, 228, 708, 789
DpnII GATC 4 cut(s) 204, 226, 706, 787
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 3 cut(s) 190, 582, 636
EagI CGGCCG 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 582
Eco130I CCWWGG 3 cut(s) 120, 448, 652
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 2 cut(s) 385, 589
Eco47I GGWCC 2 cut(s) 547, 771
Eco52I CGGCCG 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 258
EcoRV GATATC 2 cut(s) 385, 589
EcoT14I CCWWGG 3 cut(s) 120, 448, 652
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 3 cut(s) 120, 448, 652
FaeI CATG 4 cut(s) 205, 573, 612, 766
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 4 cut(s) 201, 569, 608, 762
FbaI TGATCA 2 cut(s) 204, 787
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 75, 244, 474, 666, 678
FokI GGATG 2 cut(s) 380, 425
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 5 cut(s) 75, 244, 474, 666, 678
FspBI CTAG 3 cut(s) 50, 212, 826
GlaI GCGC 1 cut(s) 477
GluI GCNGC 5 cut(s) 75, 244, 474, 666, 678
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 4 cut(s) 192, 528, 584, 638
HapII CCGG 1 cut(s) 635
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 478
Hin1II CATG 4 cut(s) 205, 573, 612, 766
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HinfI GANTC 2 cut(s) 196, 613
HpaII CCGG 1 cut(s) 635
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 3 cut(s) 160, 463, 659
Hpy188I TCNGA 3 cut(s) 262, 628, 792
Hpy188III TCNNGA 3 cut(s) 520, 671, 814
Hpy8I GTNNAC 3 cut(s) 160, 463, 659
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4IV ACGT 2 cut(s) 425, 540
HpyCH4V TGCA 4 cut(s) 246, 299, 437, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 674
HpySE526I ACGT 2 cut(s) 425, 540
Hsp92II CATG 4 cut(s) 205, 573, 612, 766
HspAI GCGC 1 cut(s) 476
KpnI GGTACC 1 cut(s) 120
Ksp22I TGATCA 2 cut(s) 204, 787
Kzo9I GATC 4 cut(s) 204, 226, 706, 787
LmnI GCTCC 3 cut(s) 65, 263, 673
Lsp1109I GCAGC 4 cut(s) 230, 485, 652, 664
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 50, 212, 826
MaeII ACGT 2 cut(s) 425, 540
MaeIII GTNAC 2 cut(s) 43, 353
MalI GATC 4 cut(s) 206, 228, 708, 789
MboI GATC 4 cut(s) 204, 226, 706, 787
MboII GAAGA 2 cut(s) 137, 330
MhlI GDGCHC 3 cut(s) 260, 488, 517
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 5 cut(s) 60, 316, 372, 551, 732
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 285, 487
Mox20I TGGCCA 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 317
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 267, 735
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 674
NdeII GATC 4 cut(s) 204, 226, 706, 787
NlaIII CATG 4 cut(s) 205, 573, 612, 766
NlaIV GGNNCC 5 cut(s) 6, 67, 118, 514, 548
NmeAIII GCCGAG 1 cut(s) 560
NmuCI GTSAC 1 cut(s) 353
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 613
PkrI GCNGC 5 cut(s) 76, 245, 475, 667, 679
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 260
PspN4I GGNNCC 5 cut(s) 6, 67, 118, 514, 548
PspPI GGNCC 3 cut(s) 526, 547, 771
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 267, 735
SatI GCNGC 5 cut(s) 75, 244, 474, 666, 678
Sau3AI GATC 4 cut(s) 204, 226, 706, 787
Sau96I GGNCC 3 cut(s) 526, 547, 771
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 3 cut(s) 260, 488, 517
SfaNI GCATC 1 cut(s) 487
SinI GGWCC 2 cut(s) 547, 771
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 5 cut(s) 60, 316, 372, 551, 732
SsiI CCGC 2 cut(s) 75, 471
SspMI CTAG 3 cut(s) 50, 212, 826
SstI GAGCTC 1 cut(s) 260
StyI CCWWGG 3 cut(s) 120, 448, 652
TaaI ACNGT 1 cut(s) 803
TaiI ACGT 2 cut(s) 428, 543
TaqI TCGA 1 cut(s) 387
TasI AATT 5 cut(s) 60, 316, 372, 551, 732
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 2 cut(s) 267, 735
Tru9I TTAA 2 cut(s) 267, 735
TscAI CASTG 5 cut(s) 30, 253, 488, 623, 808
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 4 cut(s) 243, 473, 665, 677
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 5 cut(s) 30, 253, 488, 623, 808
VpaK11BI GGWCC 2 cut(s) 547, 771
XmiI GTMKAC 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 3 cut(s) 50, 212, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.